Strain Fitness in Pantoea sp. MT58 around IAI47_18535

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
3,942,296	-				-0.9
3,942,305	-				-1.0
3,942,305	-				-0.7
3,942,305	-				+0.3
3,942,305	-				+0.3
3,942,305	-				-0.3
3,942,435	-				-1.5
3,942,435	-				-0.1
3,942,435	-				+0.2
3,942,435	-				+0.2
3,942,435	-				-2.0
3,942,435	-				-0.7
3,942,441	-				-0.3
3,942,441	-				-0.5
3,942,441	-				+0.8
3,942,443	-				+1.0
3,942,443	-				-0.1
3,942,443	-				-0.6
3,942,443	-				+0.3
3,942,443	-				-0.7
3,942,481	-				+1.6
3,942,488	-				+2.3
3,942,488	-				-0.3
3,942,488	-				-1.8
3,942,488	-				-0.2
3,942,488	-				-0.1
3,942,488	-				-0.9
3,942,488	-				+0.3
3,942,492	-				-0.1
3,942,492	-				-0.7
3,942,499	-				+0.7
3,942,499	-				+0.1
3,942,499	-				-0.7
3,942,499	-				+1.7
3,942,507	-				+0.3
3,942,521	-				-0.2
3,942,526	-				-0.4
3,942,526	-				-0.1
3,942,526	-				-1.4
3,942,562	-				+1.5
3,942,595	+				-0.7
3,942,595	+				-0.2
3,942,595	+				-0.7
3,942,595	+				+0.7
3,942,595	+				-1.0
3,942,596	-				-1.8
3,942,713	-		IAI47_18530	0.36	+0.3
3,942,775	+		IAI47_18530	0.54	-3.2
3,942,776	-		IAI47_18530	0.55	-3.1
3,942,854	+		IAI47_18530	0.78	+0.3
3,942,855	-		IAI47_18530	0.78	-3.7
3,942,945	-				-0.7
3,942,945	-				-0.7
3,942,968	+				-2.5
3,942,969	-				+0.8
3,942,969	-				-0.8
3,942,969	-				+1.4
3,942,969	-				-0.5
3,942,970	+				-2.0
3,942,989	+				-0.7
3,942,990	-				-2.0
3,943,001	+				-0.7
3,943,019	+				-1.0
3,943,023	-				-0.8
3,943,030	+				-0.7
3,943,035	+				+1.3
3,943,043	+				-0.2
3,943,043	+				+0.1
3,943,044	-				-0.7
3,943,044	-				-2.2
3,943,044	-				-1.0
3,943,044	-				+0.3
3,943,121	+				-1.2
3,943,170	-				-2.5
3,943,307	-		IAI47_18535	0.20	-0.7
3,943,399	-		IAI47_18535	0.27	+0.9
3,943,399	-		IAI47_18535	0.27	-0.7
3,943,399	-		IAI47_18535	0.27	+1.3
3,943,413	+		IAI47_18535	0.29	-0.7
3,943,451	+		IAI47_18535	0.31	-0.7
3,943,451	+		IAI47_18535	0.31	-0.9
3,943,451	+		IAI47_18535	0.31	-0.8
3,943,452	-		IAI47_18535	0.32	+0.3
3,943,506	-		IAI47_18535	0.36	-1.7
3,943,506	-		IAI47_18535	0.36	-1.2
3,943,517	+		IAI47_18535	0.37	-0.5
3,943,517	+		IAI47_18535	0.37	-1.2
3,943,517	+		IAI47_18535	0.37	-0.5
3,943,517	+		IAI47_18535	0.37	-1.7
3,943,517	+		IAI47_18535	0.37	-1.5
3,943,517	+		IAI47_18535	0.37	-0.5
3,943,517	+		IAI47_18535	0.37	-0.5
3,943,526	+		IAI47_18535	0.37	+0.9
3,943,526	+		IAI47_18535	0.37	-0.7
3,943,526	+		IAI47_18535	0.37	-2.0
3,943,526	+		IAI47_18535	0.37	-0.7
3,943,527	-		IAI47_18535	0.37	-1.5
3,943,568	+		IAI47_18535	0.41	-1.1
3,943,568	+		IAI47_18535	0.41	-0.7
3,943,571	+		IAI47_18535	0.41	-0.7
3,943,571	+		IAI47_18535	0.41	-0.7
3,943,572	-		IAI47_18535	0.41	-1.2
3,943,577	+		IAI47_18535	0.41	-0.2
3,943,578	-		IAI47_18535	0.41	+0.9
3,943,650	+		IAI47_18535	0.47	-1.9
3,943,650	+		IAI47_18535	0.47	-1.1
3,943,651	-		IAI47_18535	0.47	-0.7
3,943,695	+		IAI47_18535	0.50	-1.0
3,943,695	+		IAI47_18535	0.50	-2.0
3,943,695	+		IAI47_18535	0.50	-1.2
3,943,695	+		IAI47_18535	0.50	+0.8
3,943,695	+		IAI47_18535	0.50	-1.2
3,943,696	-		IAI47_18535	0.50	-1.2
3,943,696	-		IAI47_18535	0.50	-0.4
3,943,696	-		IAI47_18535	0.50	+0.3
3,943,696	-		IAI47_18535	0.50	+0.9
3,943,696	-		IAI47_18535	0.50	-1.7
3,943,752	+		IAI47_18535	0.55	-0.0
3,943,753	-		IAI47_18535	0.55	-1.2
3,943,760	+		IAI47_18535	0.55	+0.9
3,943,760	+		IAI47_18535	0.55	-0.1
3,943,934	+		IAI47_18535	0.69	-2.0
3,943,935	-		IAI47_18535	0.69	-0.4
3,943,963	+		IAI47_18535	0.71	-0.7
3,943,963	+		IAI47_18535	0.71	-0.9
3,943,963	+		IAI47_18535	0.71	+0.6
3,943,963	+		IAI47_18535	0.71	+0.1
3,943,964	-		IAI47_18535	0.71	-0.7
3,943,964	-		IAI47_18535	0.71	-1.2
3,943,964	-		IAI47_18535	0.71	-0.7
3,943,964	-		IAI47_18535	0.71	-1.7
3,943,964	-		IAI47_18535	0.71	-0.9
3,943,964	-		IAI47_18535	0.71	-0.7
3,943,967	+		IAI47_18535	0.71	+0.3
3,943,967	+		IAI47_18535	0.71	+1.7
3,943,967	+		IAI47_18535	0.71	-2.2
3,943,967	+		IAI47_18535	0.71	+0.3
3,943,967	+		IAI47_18535	0.71	+0.3
3,943,968	-		IAI47_18535	0.71	-2.2
3,943,968	-		IAI47_18535	0.71	-0.7
3,943,968	-		IAI47_18535	0.71	-2.5
3,943,968	-		IAI47_18535	0.71	-1.2
3,943,968	-		IAI47_18535	0.71	-1.8
3,943,968	-		IAI47_18535	0.71	-0.7
3,944,017	+		IAI47_18535	0.75	+2.7
3,944,030	+		IAI47_18535	0.76	-1.0
3,944,030	+		IAI47_18535	0.76	-1.7
3,944,030	+		IAI47_18535	0.76	-0.7
3,944,030	+		IAI47_18535	0.76	+0.8
3,944,030	+		IAI47_18535	0.76	-0.3
3,944,031	-		IAI47_18535	0.76	-2.5
3,944,031	-		IAI47_18535	0.76	+0.3
3,944,031	-		IAI47_18535	0.76	-1.2
3,944,031	-		IAI47_18535	0.76	-2.5
3,944,034	+		IAI47_18535	0.77	-1.5
3,944,034	+		IAI47_18535	0.77	+0.3
3,944,034	+		IAI47_18535	0.77	-0.5
3,944,034	+		IAI47_18535	0.77	-1.7
3,944,034	+		IAI47_18535	0.77	-1.1
3,944,034	+		IAI47_18535	0.77	-3.1
3,944,035	-		IAI47_18535	0.77	-1.0
3,944,061	+		IAI47_18535	0.79	-0.1
3,944,061	+		IAI47_18535	0.79	+0.5
3,944,061	+		IAI47_18535	0.79	-1.4
3,944,072	+		IAI47_18535	0.80	-0.2
3,944,072	+		IAI47_18535	0.80	-1.0
3,944,072	+		IAI47_18535	0.80	-0.9
3,944,073	-		IAI47_18535	0.80	+0.3
3,944,111	+		IAI47_18535	0.83	-1.1
3,944,111	+		IAI47_18535	0.83	-0.6
3,944,111	+		IAI47_18535	0.83	-1.2
3,944,111	+		IAI47_18535	0.83	-0.7
3,944,111	+		IAI47_18535	0.83	-0.4
3,944,111	+		IAI47_18535	0.83	-2.7
3,944,112	-		IAI47_18535	0.83	-2.2
3,944,112	-		IAI47_18535	0.83	-2.0
3,944,112	-		IAI47_18535	0.83	+0.3
3,944,112	-		IAI47_18535	0.83	-2.8
3,944,112	-		IAI47_18535	0.83	-0.7
3,944,133	+		IAI47_18535	0.84	+0.3
3,944,134	-		IAI47_18535	0.84	-1.0
3,944,163	+		IAI47_18535	0.87	-0.3
3,944,163	+		IAI47_18535	0.87	+0.0
3,944,163	+		IAI47_18535	0.87	-0.1
3,944,163	+		IAI47_18535	0.87	+0.3
3,944,163	+		IAI47_18535	0.87	+1.3
3,944,163	+		IAI47_18535	0.87	+0.5
3,944,163	+		IAI47_18535	0.87	+0.3
3,944,163	+		IAI47_18535	0.87	+0.3
3,944,164	-		IAI47_18535	0.87	-0.7
3,944,164	-		IAI47_18535	0.87	-2.5
3,944,164	-		IAI47_18535	0.87	-1.2
3,944,174	+		IAI47_18535	0.87	-0.1
3,944,174	+		IAI47_18535	0.87	-0.0
3,944,174	+		IAI47_18535	0.87	+1.8
3,944,174	+		IAI47_18535	0.87	-1.2
3,944,174	+		IAI47_18535	0.87	-1.0
3,944,175	-		IAI47_18535	0.87	-0.7
3,944,175	-		IAI47_18535	0.87	-1.2
3,944,193	+		IAI47_18535	0.89	-1.2
3,944,194	-		IAI47_18535	0.89	-2.7
3,944,194	-		IAI47_18535	0.89	+0.3
3,944,212	+				-2.5
3,944,221	+				-2.5
3,944,221	+				-1.1
3,944,231	+				-1.5
3,944,283	-				-3.0
3,944,322	-				+1.3
3,944,348	-				+0.3
3,944,364	+				-1.2
3,944,364	+				+0.3
3,944,365	-				-1.7
3,944,380	+				-0.7
3,944,387	+				-1.0
3,944,387	+				-0.7
3,944,387	+				+0.3
3,944,387	+				-0.1
3,944,387	+				-0.7
3,944,388	-				-1.2
3,944,399	+				-1.7
3,944,399	+				-3.0
3,944,399	+				-0.7
3,944,399	+				-2.5
3,944,399	+				-0.7
3,944,399	+				-0.7
3,944,399	+				-2.7
3,944,399	+				-1.5
3,944,399	+				-1.7
3,944,400	-				-0.2
3,944,400	-				-1.2
3,944,400	-				-0.7
3,944,400	-				-2.8
3,944,400	-				-0.7
3,944,400	-				-1.7
3,944,400	-				-1.0
3,944,400	-				-0.4
3,944,430	-				-2.7
3,944,430	-				-0.7
3,944,449	+				-1.2
3,944,450	-				+0.3
3,944,483	+				-0.8
3,944,490	-				-1.3
3,944,490	-				-0.7
3,944,561	+		IAI47_18540	0.15	+0.3
3,944,660	+		IAI47_18540	0.21	-2.2
3,944,660	+		IAI47_18540	0.21	-1.1
3,944,660	+		IAI47_18540	0.21	-2.5
3,944,660	+		IAI47_18540	0.21	+0.9
3,944,660	+		IAI47_18540	0.21	+0.3
3,944,661	-		IAI47_18540	0.21	-0.7
3,944,661	-		IAI47_18540	0.21	+0.3
3,944,661	-		IAI47_18540	0.21	-2.1
3,944,663	+		IAI47_18540	0.22	-1.2
3,944,663	+		IAI47_18540	0.22	+0.3
3,944,663	+		IAI47_18540	0.22	-2.0
3,944,663	+		IAI47_18540	0.22	-0.7
3,944,663	+		IAI47_18540	0.22	-0.7
3,944,663	+		IAI47_18540	0.22	+0.3
3,944,663	+		IAI47_18540	0.22	+0.9
3,944,663	+		IAI47_18540	0.22	-2.4
3,944,663	+		IAI47_18540	0.22	-0.7
3,944,663	+		IAI47_18540	0.22	-1.7
3,944,664	-		IAI47_18540	0.22	+0.3
3,944,664	-		IAI47_18540	0.22	-1.0
3,944,664	-		IAI47_18540	0.22	-0.7
3,944,664	-		IAI47_18540	0.22	-1.7
3,944,664	-		IAI47_18540	0.22	-3.0
3,944,664	-		IAI47_18540	0.22	-1.7
3,944,703	+		IAI47_18540	0.24	-2.4
3,944,703	+		IAI47_18540	0.24	-0.7
3,944,703	+		IAI47_18540	0.24	-0.9
3,944,703	+		IAI47_18540	0.24	-2.0
3,944,704	-		IAI47_18540	0.24	+0.9
3,944,704	-		IAI47_18540	0.24	-2.1
3,944,746	+		IAI47_18540	0.27	-0.2
3,944,816	+		IAI47_18540	0.32	-1.2
3,944,816	+		IAI47_18540	0.32	+0.3
3,944,817	-		IAI47_18540	0.32	+0.8
3,944,817	-		IAI47_18540	0.32	-2.5
3,945,044	+		IAI47_18540	0.47	-1.2
3,945,188	+		IAI47_18540	0.57	-1.2
3,945,189	-		IAI47_18540	0.57	-1.2
3,945,189	-		IAI47_18540	0.57	+0.3
3,945,189	-		IAI47_18540	0.57	-2.2
3,945,189	-		IAI47_18540	0.57	-0.7
3,945,232	-		IAI47_18540	0.60	-1.7
3,945,232	-		IAI47_18540	0.60	-1.7
3,945,232	-		IAI47_18540	0.60	-2.2
3,945,252	-		IAI47_18540	0.61	+0.3