Strain Fitness in Pantoea sp. MT58 around IAI47_16340

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
3,463,640	+				-1.2
3,463,677	+				+0.8
3,463,677	+				+0.9
3,463,677	+				-0.7
3,463,677	+				-1.5
3,463,677	+				-0.1
3,463,678	-				-0.2
3,463,678	-				-0.9
3,463,678	-				+0.0
3,463,724	+		IAI47_16335	0.13	-1.2
3,463,725	-		IAI47_16335	0.13	-0.7
3,463,772	+		IAI47_16335	0.18	+0.8
3,463,772	+		IAI47_16335	0.18	-0.8
3,463,772	+		IAI47_16335	0.18	+1.3
3,463,773	-		IAI47_16335	0.18	-1.1
3,463,773	-		IAI47_16335	0.18	-0.8
3,463,773	-		IAI47_16335	0.18	-0.4
3,463,773	-		IAI47_16335	0.18	+0.3
3,463,832	+		IAI47_16335	0.24	-1.5
3,463,832	+		IAI47_16335	0.24	+0.6
3,463,832	+		IAI47_16335	0.24	+0.6
3,463,833	-		IAI47_16335	0.24	+0.7
3,463,833	-		IAI47_16335	0.24	-0.7
3,463,854	+		IAI47_16335	0.26	-1.2
3,463,925	+		IAI47_16335	0.33	+0.9
3,463,926	-		IAI47_16335	0.33	-0.8
3,463,926	-		IAI47_16335	0.33	-0.2
3,464,187	+		IAI47_16335	0.59	-0.4
3,464,187	+		IAI47_16335	0.59	-0.8
3,464,187	+		IAI47_16335	0.59	-0.4
3,464,195	+		IAI47_16335	0.60	+0.0
3,464,195	+		IAI47_16335	0.60	-0.2
3,464,195	+		IAI47_16335	0.60	+0.2
3,464,195	+		IAI47_16335	0.60	+1.7
3,464,196	-		IAI47_16335	0.60	+0.8
3,464,196	-		IAI47_16335	0.60	+0.3
3,464,196	-		IAI47_16335	0.60	-0.7
3,464,196	-		IAI47_16335	0.60	-1.1
3,464,196	-		IAI47_16335	0.60	-2.7
3,464,225	+		IAI47_16335	0.63	-0.2
3,464,225	+		IAI47_16335	0.63	-0.3
3,464,225	+		IAI47_16335	0.63	+0.3
3,464,225	+		IAI47_16335	0.63	+0.3
3,464,225	+		IAI47_16335	0.63	-1.7
3,464,226	-		IAI47_16335	0.63	+0.3
3,464,239	-		IAI47_16335	0.64	-1.5
3,464,239	-		IAI47_16335	0.64	-0.5
3,464,240	+		IAI47_16335	0.65	-0.4
3,464,240	+		IAI47_16335	0.65	-0.1
3,464,240	+		IAI47_16335	0.65	+1.6
3,464,240	+		IAI47_16335	0.65	-0.4
3,464,240	+		IAI47_16335	0.65	-0.5
3,464,241	-		IAI47_16335	0.65	-1.1
3,464,309	+		IAI47_16335	0.71	-0.7
3,464,309	+		IAI47_16335	0.71	+0.6
3,464,309	+		IAI47_16335	0.71	+0.3
3,464,309	+		IAI47_16335	0.71	-0.1
3,464,309	+		IAI47_16335	0.71	-0.2
3,464,309	+		IAI47_16335	0.71	-1.2
3,464,309	+		IAI47_16335	0.71	+0.3
3,464,310	-		IAI47_16335	0.72	+0.7
3,464,310	-		IAI47_16335	0.72	-1.0
3,464,310	-		IAI47_16335	0.72	+0.3
3,464,310	-		IAI47_16335	0.72	+0.9
3,464,310	-		IAI47_16335	0.72	-0.6
3,464,310	-		IAI47_16335	0.72	-2.2
3,464,394	+		IAI47_16335	0.80	+1.9
3,464,394	+		IAI47_16335	0.80	+0.9
3,464,394	+		IAI47_16335	0.80	-0.2
3,464,411	+		IAI47_16335	0.82	+0.1
3,464,411	+		IAI47_16335	0.82	+0.1
3,464,411	+		IAI47_16335	0.82	+1.8
3,464,411	+		IAI47_16335	0.82	-0.7
3,464,411	+		IAI47_16335	0.82	+1.3
3,464,412	-		IAI47_16335	0.82	+3.7
3,464,412	-		IAI47_16335	0.82	-0.2
3,464,412	-		IAI47_16335	0.82	+0.3
3,464,412	-		IAI47_16335	0.82	-0.5
3,464,412	-		IAI47_16335	0.82	-1.4
3,464,414	+		IAI47_16335	0.82	-1.2
3,464,477	+		IAI47_16335	0.88	+0.3
3,464,477	+		IAI47_16335	0.88	+0.7
3,464,515	+				-0.7
3,464,516	-				+0.7
3,464,530	+				+0.9
3,464,530	+				-0.7
3,464,531	-				-0.4
3,464,589	+				-0.0
3,464,589	+				+0.9
3,464,589	+				+0.5
3,464,589	+				+0.1
3,464,589	+				+0.8
3,464,590	-				+0.2
3,464,590	-				-0.7
3,464,590	-				-3.0
3,464,593	-				-0.0
3,464,593	-				+0.7
3,464,641	+				-0.2
3,464,710	+				-0.1
3,464,710	+				+0.2
3,464,710	+				+0.3
3,464,710	+				+0.3
3,464,710	+				+0.3
3,464,710	+				-0.3
3,464,710	+				+2.9
3,464,710	+				-0.7
3,464,711	-				-0.7
3,464,711	-				-0.7
3,464,711	-				-2.5
3,464,711	-				+0.7
3,464,711	-				-1.7
3,464,711	-				+0.7
3,464,711	-				-0.1
3,464,841	-		IAI47_16340	0.16	+1.2
3,464,872	+		IAI47_16340	0.19	+1.3
3,464,872	+		IAI47_16340	0.19	-0.0
3,464,873	-		IAI47_16340	0.19	+3.1
3,464,917	+		IAI47_16340	0.22	+0.1
3,464,917	+		IAI47_16340	0.22	+1.4
3,464,917	+		IAI47_16340	0.22	+1.3
3,464,917	+		IAI47_16340	0.22	+0.7
3,464,917	+		IAI47_16340	0.22	-0.1
3,464,917	+		IAI47_16340	0.22	+1.1
3,464,917	+		IAI47_16340	0.22	+3.1
3,464,917	+		IAI47_16340	0.22	+0.2
3,464,917	+		IAI47_16340	0.22	+0.6
3,464,917	+		IAI47_16340	0.22	-0.4
3,464,918	-		IAI47_16340	0.22	-0.8
3,464,918	-		IAI47_16340	0.22	+0.9
3,464,918	-		IAI47_16340	0.22	+0.6
3,464,918	-		IAI47_16340	0.22	-0.2
3,464,918	-		IAI47_16340	0.22	+3.0
3,464,918	-		IAI47_16340	0.22	-0.2
3,464,918	-		IAI47_16340	0.22	+0.8
3,464,972	+		IAI47_16340	0.27	-0.7
3,464,980	+		IAI47_16340	0.27	-1.2
3,464,980	+		IAI47_16340	0.27	-0.7
3,464,981	-		IAI47_16340	0.27	+0.6
3,464,981	-		IAI47_16340	0.27	+2.5
3,464,985	-		IAI47_16340	0.28	+1.1
3,465,001	+		IAI47_16340	0.29	-0.1
3,465,001	+		IAI47_16340	0.29	+0.3
3,465,001	+		IAI47_16340	0.29	+0.3
3,465,001	+		IAI47_16340	0.29	+0.2
3,465,001	+		IAI47_16340	0.29	-1.4
3,465,001	+		IAI47_16340	0.29	-1.2
3,465,001	+		IAI47_16340	0.29	+0.8
3,465,001	+		IAI47_16340	0.29	-0.7
3,465,001	+		IAI47_16340	0.29	+1.3
3,465,002	-		IAI47_16340	0.29	+0.3
3,465,002	-		IAI47_16340	0.29	+0.5
3,465,002	-		IAI47_16340	0.29	+1.7
3,465,002	-		IAI47_16340	0.29	-0.4
3,465,002	-		IAI47_16340	0.29	-0.2
3,465,002	-		IAI47_16340	0.29	+0.0
3,465,002	-		IAI47_16340	0.29	+0.8
3,465,002	-		IAI47_16340	0.29	-0.4
3,465,002	-		IAI47_16340	0.29	+0.1
3,465,040	+		IAI47_16340	0.32	+0.8
3,465,041	-		IAI47_16340	0.32	-0.5
3,465,041	-		IAI47_16340	0.32	+1.2
3,465,041	-		IAI47_16340	0.32	+0.3
3,465,082	+		IAI47_16340	0.36	-0.2
3,465,082	+		IAI47_16340	0.36	+1.0
3,465,082	+		IAI47_16340	0.36	+0.3
3,465,082	+		IAI47_16340	0.36	+0.7
3,465,082	+		IAI47_16340	0.36	+2.3
3,465,082	+		IAI47_16340	0.36	-0.2
3,465,082	+		IAI47_16340	0.36	+1.2
3,465,083	-		IAI47_16340	0.36	+0.9
3,465,083	-		IAI47_16340	0.36	+0.8
3,465,083	-		IAI47_16340	0.36	+1.1
3,465,083	-		IAI47_16340	0.36	-1.1
3,465,083	-		IAI47_16340	0.36	-0.7
3,465,094	+		IAI47_16340	0.37	+1.4
3,465,094	+		IAI47_16340	0.37	-1.2
3,465,095	-		IAI47_16340	0.37	+0.9
3,465,116	+		IAI47_16340	0.38	+2.5
3,465,117	-		IAI47_16340	0.38	+0.9
3,465,117	-		IAI47_16340	0.38	-0.6
3,465,117	-		IAI47_16340	0.38	+0.0
3,465,117	-		IAI47_16340	0.38	-0.7
3,465,117	-		IAI47_16340	0.38	+0.6
3,465,134	+		IAI47_16340	0.40	+0.2
3,465,134	+		IAI47_16340	0.40	+0.1
3,465,134	+		IAI47_16340	0.40	+1.0
3,465,134	+		IAI47_16340	0.40	+2.3
3,465,134	+		IAI47_16340	0.40	+0.6
3,465,135	-		IAI47_16340	0.40	+0.3
3,465,135	-		IAI47_16340	0.40	-0.3
3,465,135	-		IAI47_16340	0.40	+0.3
3,465,152	+		IAI47_16340	0.41	+1.7
3,465,220	+		IAI47_16340	0.47	-0.5
3,465,220	+		IAI47_16340	0.47	+1.3
3,465,221	-		IAI47_16340	0.47	+1.5
3,465,272	+		IAI47_16340	0.51	+0.2
3,465,273	-		IAI47_16340	0.51	-0.4
3,465,273	-		IAI47_16340	0.51	+0.2
3,465,273	-		IAI47_16340	0.51	+0.3
3,465,273	-		IAI47_16340	0.51	-0.2
3,465,273	-		IAI47_16340	0.51	+0.8
3,465,325	+		IAI47_16340	0.55	+0.7
3,465,325	+		IAI47_16340	0.55	+0.8
3,465,325	+		IAI47_16340	0.55	+0.8
3,465,325	+		IAI47_16340	0.55	+1.3
3,465,325	+		IAI47_16340	0.55	-0.2
3,465,325	+		IAI47_16340	0.55	+0.7
3,465,325	+		IAI47_16340	0.55	+0.2
3,465,325	+		IAI47_16340	0.55	+2.9
3,465,326	-		IAI47_16340	0.55	+0.3
3,465,326	-		IAI47_16340	0.55	+1.9
3,465,326	-		IAI47_16340	0.55	-1.2
3,465,326	-		IAI47_16340	0.55	+0.0
3,465,326	-		IAI47_16340	0.55	-0.4
3,465,326	-		IAI47_16340	0.55	+0.8
3,465,326	-		IAI47_16340	0.55	-0.1
3,465,326	-		IAI47_16340	0.55	+0.5
3,465,326	-		IAI47_16340	0.55	+1.1
3,465,326	-		IAI47_16340	0.55	+2.3
3,465,355	+		IAI47_16340	0.58	+0.9
3,465,355	+		IAI47_16340	0.58	-0.0
3,465,355	+		IAI47_16340	0.58	+1.6
3,465,356	-		IAI47_16340	0.58	-1.2
3,465,356	-		IAI47_16340	0.58	+0.0
3,465,356	-		IAI47_16340	0.58	+0.3
3,465,356	-		IAI47_16340	0.58	+1.1
3,465,433	+		IAI47_16340	0.64	-0.5
3,465,484	+		IAI47_16340	0.68	+0.7
3,465,484	+		IAI47_16340	0.68	-0.4
3,465,485	-		IAI47_16340	0.68	+1.0
3,465,485	-		IAI47_16340	0.68	+0.6
3,465,485	-		IAI47_16340	0.68	-0.1
3,465,488	+		IAI47_16340	0.68	+2.2
3,465,488	+		IAI47_16340	0.68	+0.6
3,465,488	+		IAI47_16340	0.68	+0.0
3,465,488	+		IAI47_16340	0.68	-0.7
3,465,488	+		IAI47_16340	0.68	+0.7
3,465,489	-		IAI47_16340	0.68	+0.5
3,465,489	-		IAI47_16340	0.68	+0.2
3,465,489	-		IAI47_16340	0.68	+0.9
3,465,489	-		IAI47_16340	0.68	+1.9
3,465,489	-		IAI47_16340	0.68	+1.1
3,465,489	-		IAI47_16340	0.68	+1.3
3,465,489	-		IAI47_16340	0.68	+1.0
3,465,489	-		IAI47_16340	0.68	+0.1
3,465,583	+		IAI47_16340	0.76	+2.8
3,465,584	-		IAI47_16340	0.76	-0.7
3,465,596	+		IAI47_16340	0.77	+0.3
3,465,597	-		IAI47_16340	0.77	+0.0
3,465,597	-		IAI47_16340	0.77	+0.2
3,465,597	-		IAI47_16340	0.77	+0.7
3,465,597	-		IAI47_16340	0.77	+0.8
3,465,597	-		IAI47_16340	0.77	+0.3
3,465,597	-		IAI47_16340	0.77	+0.2
3,465,597	-		IAI47_16340	0.77	-0.2
3,465,637	+		IAI47_16340	0.80	+0.6
3,465,637	+		IAI47_16340	0.80	-0.1
3,465,637	+		IAI47_16340	0.80	+1.2
3,465,637	+		IAI47_16340	0.80	+1.1
3,465,637	+		IAI47_16340	0.80	+1.5
3,465,637	+		IAI47_16340	0.80	-1.0
3,465,637	+		IAI47_16340	0.80	-0.2
3,465,638	-		IAI47_16340	0.80	+0.2
3,465,638	-		IAI47_16340	0.80	-0.1
3,465,638	-		IAI47_16340	0.80	+1.3
3,465,638	-		IAI47_16340	0.80	+0.9
3,465,638	-		IAI47_16340	0.80	-0.5
3,465,638	-		IAI47_16340	0.80	+0.5
3,465,641	+		IAI47_16340	0.81	+1.7
3,465,641	+		IAI47_16340	0.81	+0.7
3,465,641	+		IAI47_16340	0.81	-0.9
3,465,641	+		IAI47_16340	0.81	+0.9
3,465,641	+		IAI47_16340	0.81	+0.6
3,465,641	+		IAI47_16340	0.81	-0.2
3,465,641	+		IAI47_16340	0.81	+0.9
3,465,641	+		IAI47_16340	0.81	+0.0
3,465,641	+		IAI47_16340	0.81	-0.5
3,465,642	-		IAI47_16340	0.81	+1.0
3,465,642	-		IAI47_16340	0.81	-0.8
3,465,642	-		IAI47_16340	0.81	-0.2
3,465,642	-		IAI47_16340	0.81	+0.7
3,465,642	-		IAI47_16340	0.81	+0.5
3,465,642	-		IAI47_16340	0.81	+0.3
3,465,642	-		IAI47_16340	0.81	-1.2
3,465,642	-		IAI47_16340	0.81	+0.8
3,465,642	-		IAI47_16340	0.81	+1.0
3,465,642	-		IAI47_16340	0.81	+1.8
3,465,662	-		IAI47_16340	0.82	-0.2
3,465,669	-		IAI47_16340	0.83	+1.9
3,465,676	-		IAI47_16340	0.83	-0.1
3,465,676	-		IAI47_16340	0.83	-2.5
3,465,786	+				+1.9
3,465,786	+				+0.9
3,465,786	+				+0.7
3,465,786	+				+2.1
3,465,786	+				-0.7
3,465,786	+				+1.1
3,465,786	+				-0.7
3,465,786	+				+0.3
3,465,786	+				-0.1
3,465,787	-				+0.1
3,465,787	-				+1.2
3,465,787	-				+0.1
3,465,787	-				+0.7
3,465,787	-				+0.6
3,465,787	-				+0.9
3,465,787	-				+1.1
3,465,787	-				-0.5
3,465,787	-				+0.5
3,465,787	-				-1.4
3,465,787	-				-0.7
3,465,787	-				+0.0
3,465,790	+				+0.8
3,465,791	-				+0.3
3,465,791	-				-0.5
3,465,833	+				-0.9
3,465,833	+				+0.1
3,465,834	-				+0.3
3,465,851	+				+0.5
3,465,865	+				-0.4
3,465,866	-				+0.3
3,465,907	+				-0.4
3,465,907	+				+0.8
3,465,958	+				+0.1
3,465,959	-				+0.5
3,465,959	-				+0.6
3,465,959	-				+1.9
3,466,053	+				-1.7
3,466,053	+				+0.3
3,466,241	+		IAI47_16345	0.21	+0.3
3,466,241	+		IAI47_16345	0.21	+0.5
3,466,242	-		IAI47_16345	0.21	+1.0
3,466,242	-		IAI47_16345	0.21	-0.8
3,466,266	+		IAI47_16345	0.22	+0.5
3,466,266	+		IAI47_16345	0.22	-1.1
3,466,266	+		IAI47_16345	0.22	-0.1
3,466,266	+		IAI47_16345	0.22	-0.2
3,466,266	+		IAI47_16345	0.22	+0.1
3,466,266	+		IAI47_16345	0.22	-0.5
3,466,266	+		IAI47_16345	0.22	+0.0
3,466,267	-		IAI47_16345	0.22	+1.1
3,466,267	-		IAI47_16345	0.22	+0.7
3,466,267	-		IAI47_16345	0.22	-0.2
3,466,267	-		IAI47_16345	0.22	+1.1
3,466,267	-		IAI47_16345	0.22	-0.9
3,466,267	-		IAI47_16345	0.22	+0.8
3,466,267	-		IAI47_16345	0.22	+0.7
3,466,267	-		IAI47_16345	0.22	+0.6
3,466,305	+		IAI47_16345	0.25	-1.1
3,466,305	+		IAI47_16345	0.25	+1.3
3,466,305	+		IAI47_16345	0.25	-0.2
3,466,306	-		IAI47_16345	0.25	+0.7
3,466,306	-		IAI47_16345	0.25	-0.2
3,466,306	-		IAI47_16345	0.25	+0.6
3,466,306	-		IAI47_16345	0.25	-0.7
3,466,321	-		IAI47_16345	0.26	+1.4
3,466,457	+		IAI47_16345	0.36	+0.6
3,466,458	-		IAI47_16345	0.36	+0.0
3,466,485	-		IAI47_16345	0.38	-0.2
3,466,485	-		IAI47_16345	0.38	+0.3
3,466,485	-		IAI47_16345	0.38	+0.1
3,466,631	+		IAI47_16345	0.49	+0.7
3,466,631	+		IAI47_16345	0.49	-0.4
3,466,631	+		IAI47_16345	0.49	-0.1
3,466,631	+		IAI47_16345	0.49	-0.4
3,466,632	-		IAI47_16345	0.49	+0.3
3,466,674	-		IAI47_16345	0.52	-0.4
3,466,733	-		IAI47_16345	0.56	+1.9
3,466,733	-		IAI47_16345	0.56	+0.7
3,466,733	-		IAI47_16345	0.56	-0.7
3,466,733	-		IAI47_16345	0.56	+0.3