Strain Fitness in Pantoea sp. MT58 around IAI47_15725

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
3,314,525	+		IAI47_15720	0.30	-0.2
3,314,525	+		IAI47_15720	0.30	-1.2
3,314,525	+		IAI47_15720	0.30	-0.0
3,314,525	+		IAI47_15720	0.30	-0.4
3,314,525	+		IAI47_15720	0.30	+0.3
3,314,525	+		IAI47_15720	0.30	-0.3
3,314,525	+		IAI47_15720	0.30	-0.1
3,314,526	-		IAI47_15720	0.30	+1.7
3,314,526	-		IAI47_15720	0.30	-0.5
3,314,526	-		IAI47_15720	0.30	+0.9
3,314,526	-		IAI47_15720	0.30	+0.5
3,314,526	-		IAI47_15720	0.30	-0.3
3,314,527	+		IAI47_15720	0.31	-2.2
3,314,527	+		IAI47_15720	0.31	-1.7
3,314,527	+		IAI47_15720	0.31	-0.7
3,314,527	+		IAI47_15720	0.31	-0.1
3,314,527	+		IAI47_15720	0.31	+1.3
3,314,559	-		IAI47_15720	0.33	+0.3
3,314,578	+		IAI47_15720	0.34	+0.2
3,314,578	+		IAI47_15720	0.34	+0.3
3,314,578	+		IAI47_15720	0.34	-0.5
3,314,578	+		IAI47_15720	0.34	+0.2
3,314,579	-		IAI47_15720	0.35	-0.8
3,314,583	+		IAI47_15720	0.35	-0.4
3,314,583	+		IAI47_15720	0.35	+0.2
3,314,583	+		IAI47_15720	0.35	-0.0
3,314,583	+		IAI47_15720	0.35	+0.2
3,314,583	+		IAI47_15720	0.35	+0.4
3,314,583	+		IAI47_15720	0.35	+1.1
3,314,584	-		IAI47_15720	0.35	+0.3
3,314,592	-		IAI47_15720	0.36	+1.1
3,314,663	+		IAI47_15720	0.41	+0.1
3,314,691	+		IAI47_15720	0.43	+0.8
3,314,691	+		IAI47_15720	0.43	-0.1
3,314,691	+		IAI47_15720	0.43	-0.5
3,314,691	+		IAI47_15720	0.43	-0.4
3,314,691	+		IAI47_15720	0.43	+0.3
3,314,691	+		IAI47_15720	0.43	+0.5
3,314,691	+		IAI47_15720	0.43	-1.6
3,314,692	-		IAI47_15720	0.43	-0.7
3,314,692	-		IAI47_15720	0.43	-0.4
3,314,692	-		IAI47_15720	0.43	-0.5
3,314,735	-		IAI47_15720	0.47	-0.7
3,314,751	+		IAI47_15720	0.48	+0.7
3,314,752	-		IAI47_15720	0.48	-0.2
3,314,752	-		IAI47_15720	0.48	-1.2
3,314,752	-		IAI47_15720	0.48	-0.3
3,314,752	-		IAI47_15720	0.48	-0.1
3,314,752	-		IAI47_15720	0.48	+1.9
3,314,770	+		IAI47_15720	0.49	+0.8
3,314,770	+		IAI47_15720	0.49	+0.5
3,314,770	+		IAI47_15720	0.49	-0.2
3,314,770	+		IAI47_15720	0.49	-0.1
3,314,771	-		IAI47_15720	0.49	+1.8
3,314,771	-		IAI47_15720	0.49	+0.2
3,314,771	-		IAI47_15720	0.49	+0.0
3,314,771	-		IAI47_15720	0.49	+0.0
3,314,794	+		IAI47_15720	0.51	-0.3
3,314,794	+		IAI47_15720	0.51	+0.9
3,314,794	+		IAI47_15720	0.51	+0.8
3,314,794	+		IAI47_15720	0.51	-0.2
3,314,794	+		IAI47_15720	0.51	-0.6
3,314,794	+		IAI47_15720	0.51	+0.2
3,314,794	+		IAI47_15720	0.51	+0.7
3,314,795	-		IAI47_15720	0.51	-0.7
3,314,795	-				+0.1
3,314,795	-		IAI47_15720	0.51	+0.0
3,314,795	-		IAI47_15720	0.51	-2.2
3,314,795	-		IAI47_15720	0.51	+0.3
3,314,855	-		IAI47_15720	0.56	+0.1
3,314,861	-		IAI47_15720	0.56	+0.8
3,314,861	-		IAI47_15720	0.56	+0.8
3,314,861	-		IAI47_15720	0.56	-0.7
3,314,861	-		IAI47_15720	0.56	-0.8
3,314,896	+		IAI47_15720	0.59	-0.5
3,314,896	+		IAI47_15720	0.59	-1.2
3,314,896	+		IAI47_15720	0.59	+0.0
3,315,064	+		IAI47_15720	0.72	+0.3
3,315,064	+		IAI47_15720	0.72	+1.7
3,315,065	-		IAI47_15720	0.72	+0.0
3,315,092	+		IAI47_15720	0.74	+0.3
3,315,092	+		IAI47_15720	0.74	-0.6
3,315,092	+		IAI47_15720	0.74	-0.2
3,315,093	-		IAI47_15720	0.74	-0.7
3,315,093	-		IAI47_15720	0.74	-0.4
3,315,098	+		IAI47_15720	0.75	-0.4
3,315,098	+		IAI47_15720	0.75	-0.7
3,315,099	-		IAI47_15720	0.75	+0.8
3,315,099	-		IAI47_15720	0.75	+0.9
3,315,099	-		IAI47_15720	0.75	-0.2
3,315,099	-		IAI47_15720	0.75	-0.2
3,315,099	-		IAI47_15720	0.75	-0.6
3,315,099	-		IAI47_15720	0.75	-1.2
3,315,142	+		IAI47_15720	0.78	+0.7
3,315,142	+		IAI47_15720	0.78	+0.9
3,315,193	+		IAI47_15720	0.82	+0.1
3,315,194	-		IAI47_15720	0.82	-0.1
3,315,199	+		IAI47_15720	0.83	-0.4
3,315,200	-		IAI47_15720	0.83	+0.7
3,315,208	+		IAI47_15720	0.83	+1.1
3,315,208	+		IAI47_15720	0.83	+0.9
3,315,209	-		IAI47_15720	0.83	-1.2
3,315,209	-		IAI47_15720	0.83	-0.1
3,315,209	-		IAI47_15720	0.83	-0.4
3,315,209	-		IAI47_15720	0.83	-0.3
3,315,209	-		IAI47_15720	0.83	+3.5
3,315,209	-		IAI47_15720	0.83	+2.5
3,315,305	-				-0.2
3,315,305	-				-0.4
3,315,305	-				-0.5
3,315,305	-				-0.2
3,315,305	-				-0.9
3,315,307	+				+1.3
3,315,307	+				-0.7
3,315,307	+				-0.2
3,315,307	+				+0.9
3,315,307	+				-1.7
3,315,308	-				-1.5
3,315,337	-				-2.2
3,315,375	+				+0.1
3,315,375	+				-0.8
3,315,472	-				+0.3
3,315,472	-				+2.7
3,315,472	-				+0.2
3,315,529	-				-2.5
3,315,529	-				-2.8
3,315,529	-				+0.3
3,315,529	-				+0.5
3,315,532	-				-2.2
3,315,532	-				+0.3
3,315,569	-				-1.5
3,315,587	-		IAI47_15725	0.11	-3.4
3,315,638	+		IAI47_15725	0.17	-0.7
3,315,639	-		IAI47_15725	0.18	-0.7
3,315,639	-		IAI47_15725	0.18	+0.3
3,315,639	-		IAI47_15725	0.18	-0.4
3,315,643	-		IAI47_15725	0.18	-1.7
3,315,643	-		IAI47_15725	0.18	-0.2
3,315,643	-		IAI47_15725	0.18	+1.7
3,315,643	-		IAI47_15725	0.18	-4.2
3,315,643	-		IAI47_15725	0.18	-0.5
3,315,643	-		IAI47_15725	0.18	-2.7
3,315,643	-		IAI47_15725	0.18	-0.7
3,315,727	-		IAI47_15725	0.29	-1.7
3,315,727	-		IAI47_15725	0.29	-1.0
3,315,727	-		IAI47_15725	0.29	-1.2
3,315,754	-		IAI47_15725	0.33	-2.2
3,315,754	-		IAI47_15725	0.33	-2.2
3,315,754	-		IAI47_15725	0.33	-0.7
3,315,754	-				+0.9
3,315,754	-		IAI47_15725	0.33	-1.0
3,315,873	+		IAI47_15725	0.48	-0.7
3,315,874	-		IAI47_15725	0.48	-1.2
3,316,069	-		IAI47_15725	0.74	-1.2
3,316,069	-		IAI47_15725	0.74	+1.9
3,316,069	-		IAI47_15725	0.74	-1.7
3,316,087	-		IAI47_15725	0.76	-1.4
3,316,146	+		IAI47_15725	0.84	-0.4
3,316,151	-		IAI47_15725	0.84	-0.4
3,316,151	-		IAI47_15725	0.84	+0.9
3,316,151	-		IAI47_15725	0.84	+1.1
3,316,151	-		IAI47_15725	0.84	+0.3
3,316,151	-		IAI47_15725	0.84	-1.1
3,316,219	-				-0.9
3,316,233	-				+0.7
3,316,240	-				+0.3
3,316,240	-				+0.3
3,316,240	-				-2.0
3,316,270	-				-0.7
3,316,270	-				-0.3
3,316,270	-				+1.3
3,316,270	-				-0.3
3,316,270	-				-1.2
3,316,384	-		IAI47_15730	0.11	-0.4
3,316,418	+		IAI47_15730	0.14	+0.8
3,316,418	+		IAI47_15730	0.14	-1.2
3,316,418	+		IAI47_15730	0.14	+0.1
3,316,418	+		IAI47_15730	0.14	-0.2
3,316,418	+		IAI47_15730	0.14	+0.3
3,316,418	+		IAI47_15730	0.14	+0.1
3,316,418	+		IAI47_15730	0.14	-0.8
3,316,419	-		IAI47_15730	0.15	+0.0
3,316,419	-		IAI47_15730	0.15	-0.2
3,316,419	-		IAI47_15730	0.15	+1.8
3,316,460	+		IAI47_15730	0.19	+1.7
3,316,460	+		IAI47_15730	0.19	-0.2
3,316,460	+		IAI47_15730	0.19	+0.6
3,316,460	+		IAI47_15730	0.19	-0.0
3,316,460	+		IAI47_15730	0.19	+0.7
3,316,460	+		IAI47_15730	0.19	+0.1
3,316,460	+		IAI47_15730	0.19	-2.0
3,316,461	-		IAI47_15730	0.19	-2.0
3,316,461	-		IAI47_15730	0.19	-1.4
3,316,481	+		IAI47_15730	0.21	+2.3
3,316,481	+		IAI47_15730	0.21	-0.1
3,316,482	-		IAI47_15730	0.21	+1.9
3,316,482	-		IAI47_15730	0.21	-0.1
3,316,629	+		IAI47_15730	0.36	-0.9
3,316,629	+		IAI47_15730	0.36	+1.2
3,316,630	-		IAI47_15730	0.36	+0.6
3,316,700	-		IAI47_15730	0.43	-1.5
3,316,740	+		IAI47_15730	0.47	+0.8
3,316,740	+		IAI47_15730	0.47	+0.3
3,316,741	-		IAI47_15730	0.47	+0.1
3,316,741	-		IAI47_15730	0.47	+0.0
3,316,741	-		IAI47_15730	0.47	-0.7
3,316,741	-		IAI47_15730	0.47	+0.5
3,316,741	-		IAI47_15730	0.47	+0.6
3,316,741	-		IAI47_15730	0.47	-0.2
3,316,741	-		IAI47_15730	0.47	+0.1
3,316,782	+		IAI47_15730	0.52	-0.7
3,316,782	+		IAI47_15730	0.52	+0.9
3,316,790	+		IAI47_15730	0.52	-0.2
3,316,790	+		IAI47_15730	0.52	+0.2
3,316,791	-		IAI47_15730	0.52	+1.7
3,316,805	+		IAI47_15730	0.54	+0.8
3,316,842	+		IAI47_15730	0.58	+0.2
3,316,853	+		IAI47_15730	0.59	+0.8
3,316,854	-		IAI47_15730	0.59	-0.3
3,316,904	-		IAI47_15730	0.64	+1.1
3,316,948	+		IAI47_15730	0.69	+0.3
3,316,949	-		IAI47_15730	0.69	+0.4
3,316,949	-		IAI47_15730	0.69	-0.2
3,317,040	+		IAI47_15730	0.78	+0.3
3,317,040	+		IAI47_15730	0.78	+0.2
3,317,119	-		IAI47_15730	0.86	+0.2
3,317,134	-		IAI47_15730	0.87	-1.5
3,317,134	-		IAI47_15730	0.87	-0.0
3,317,134	-		IAI47_15730	0.87	-0.7
3,317,194	-				+0.3
3,317,194	-				-1.0
3,317,245	-				+1.1
3,317,250	+				-1.4
3,317,251	-				-0.7