Strain Fitness in Pantoea sp. MT58 around IAI47_13770

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
2,915,748	+		IAI47_13765	0.30	-0.7
2,915,749	-		IAI47_13765	0.30	-2.3
2,915,749	-		IAI47_13765	0.30	-1.7
2,915,749	-		IAI47_13765	0.30	+0.3
2,915,902	-		IAI47_13765	0.69	-2.0
2,915,902	-		IAI47_13765	0.69	-2.0
2,915,918	-		IAI47_13765	0.73	-1.3
2,915,918	-		IAI47_13765	0.73	-1.7
2,915,948	-		IAI47_13765	0.81	-2.5
2,916,120	+				-2.0
2,916,121	-				+0.3
2,916,121	-				-0.7
2,916,186	+				-1.3
2,916,188	+				-2.3
2,916,189	-				-1.3
2,916,233	+				-1.3
2,916,233	+				+0.6
2,916,235	+				-1.4
2,916,244	+				+0.9
2,916,244	+				-2.7
2,916,244	+				+0.3
2,916,244	+				-1.3
2,916,245	-				-0.1
2,916,258	+				+1.4
2,916,280	+				-0.1
2,916,331	+				-0.6
2,916,340	-				-2.5
2,916,347	+				+0.6
2,916,347	+				+0.6
2,916,348	-				-2.8
2,916,348	-				-1.7
2,916,395	-				-3.1
2,916,395	-				-2.6
2,916,398	+				+1.1
2,916,399	-				-1.0
2,916,399	-				+0.3
2,916,419	+				-0.0
2,916,419	+				+0.2
2,916,420	-				-3.1
2,916,452	+				-1.3
2,916,452	+				+0.9
2,916,453	-				-3.7
2,916,453	-				-1.0
2,916,453	-				-3.4
2,916,453	-				-1.5
2,916,538	+				+0.6
2,916,538	+				+0.3
2,916,538	+				+0.3
2,916,570	+				-0.1
2,916,570	+				+1.2
2,916,570	+				+0.2
2,916,570	+				+1.3
2,916,570	+				-0.7
2,916,570	+				+0.8
2,916,570	+				-0.7
2,916,571	-				-0.5
2,916,571	-				-2.5
2,916,571	-				-1.3
2,916,577	+				+0.3
2,916,577	+				-0.1
2,916,578	-				-1.7
2,916,616	+				-0.5
2,916,616	+				+1.0
2,916,617	-				-0.7
2,916,626	+				+0.4
2,916,626	+				+0.6
2,916,626	+				+0.5
2,916,627	-				-2.3
2,916,627	-				-2.5
2,916,630	+				-0.6
2,916,630	+				+0.3
2,916,630	+				+0.7
2,916,630	+				-0.3
2,916,630	+				-2.0
2,916,631	-				-2.3
2,916,631	-				-2.8
2,916,631	-				-2.3
2,916,631	-				-1.7
2,916,634	+				-0.1
2,916,634	+				-1.5
2,916,634	+				-1.0
2,916,634	+				-0.4
2,916,634	+				+0.7
2,916,634	+				-1.3
2,916,635	-				-3.0
2,916,635	-				-2.8
2,916,635	-				-0.7
2,916,642	+				+0.5
2,916,663	+				-2.7
2,916,663	+				+0.3
2,916,664	-				-2.7
2,916,678	-				-2.0
2,916,699	+				-2.8
2,916,699	+				-2.0
2,916,699	+				-5.0
2,916,699	+				-3.0
2,916,699	+				-3.3
2,916,699	+				-1.3
2,916,700	-				-0.7
2,916,700	-				-1.7
2,916,700	-				-5.8
2,916,700	-				-1.3
2,916,700	-				-2.3
2,916,700	-				-2.3
2,916,700	-				-3.1
2,916,724	-				-1.7
2,916,796	-		IAI47_13770	0.11	-1.3
2,916,796	-		IAI47_13770	0.11	-1.7
2,916,796	-		IAI47_13770	0.11	-1.7
2,916,796	-		IAI47_13770	0.11	-2.0
2,916,796	-		IAI47_13770	0.11	-1.7
2,916,801	+		IAI47_13770	0.11	-0.7
2,916,801	+		IAI47_13770	0.11	-3.9
2,916,831	+		IAI47_13770	0.14	-0.7
2,916,832	-		IAI47_13770	0.14	-1.3
2,916,850	-		IAI47_13770	0.15	-2.7
2,916,850	-		IAI47_13770	0.15	-3.3
2,916,857	+		IAI47_13770	0.16	-2.3
2,916,858	-		IAI47_13770	0.16	-2.7
2,916,874	-		IAI47_13770	0.17	-2.3
2,916,874	-		IAI47_13770	0.17	-1.3
2,916,897	+		IAI47_13770	0.19	-3.9
2,916,897	+		IAI47_13770	0.19	-2.5
2,916,897	+		IAI47_13770	0.19	-2.5
2,916,897	+		IAI47_13770	0.19	-3.5
2,916,898	-		IAI47_13770	0.19	-2.0
2,916,898	-		IAI47_13770	0.19	-2.0
2,916,898	-		IAI47_13770	0.19	-2.3
2,916,898	-		IAI47_13770	0.19	-2.5
2,916,898	-		IAI47_13770	0.19	-3.6
2,916,916	+		IAI47_13770	0.20	-1.7
2,916,917	-		IAI47_13770	0.20	-1.7
2,917,008	+		IAI47_13770	0.27	-2.5
2,917,068	+		IAI47_13770	0.32	+0.3
2,917,068	+		IAI47_13770	0.32	+0.3
2,917,109	+		IAI47_13770	0.35	-0.7
2,917,109	+		IAI47_13770	0.35	-2.7
2,917,109	+				+0.3
2,917,109	+		IAI47_13770	0.35	-2.5
2,917,110	-		IAI47_13770	0.35	-2.0
2,917,110	-		IAI47_13770	0.35	-2.0
2,917,110	-		IAI47_13770	0.35	-2.7
2,917,110	-		IAI47_13770	0.35	-2.3
2,917,110	-		IAI47_13770	0.35	-2.3
2,917,110	-		IAI47_13770	0.35	-2.5
2,917,184	-		IAI47_13770	0.41	-2.5
2,917,190	-		IAI47_13770	0.42	-3.4
2,917,195	-		IAI47_13770	0.42	-2.8
2,917,213	+		IAI47_13770	0.43	-2.0
2,917,234	+		IAI47_13770	0.45	-4.1
2,917,235	-		IAI47_13770	0.45	-4.6
2,917,266	+		IAI47_13770	0.48	-2.5
2,917,282	+		IAI47_13770	0.49	-1.3
2,917,282	+		IAI47_13770	0.49	-2.3
2,917,282	+		IAI47_13770	0.49	-0.7
2,917,282	+		IAI47_13770	0.49	-2.0
2,917,282	+		IAI47_13770	0.49	-0.7
2,917,283	-		IAI47_13770	0.49	-3.1
2,917,283	-		IAI47_13770	0.49	-2.0
2,917,283	-		IAI47_13770	0.49	-2.0
2,917,360	-		IAI47_13770	0.55	-1.3
2,917,360	-		IAI47_13770	0.55	-4.5
2,917,370	+		IAI47_13770	0.56	-3.8
2,917,370	+		IAI47_13770	0.56	-2.5
2,917,370	+		IAI47_13770	0.56	-2.0
2,917,370	+		IAI47_13770	0.56	-2.7
2,917,370	+		IAI47_13770	0.56	+0.3
2,917,370	+		IAI47_13770	0.56	-2.7
2,917,371	-		IAI47_13770	0.56	-2.5
2,917,371	-		IAI47_13770	0.56	-2.5
2,917,374	+		IAI47_13770	0.56	-2.3
2,917,410	+		IAI47_13770	0.59	-2.0
2,917,476	+		IAI47_13770	0.64	-2.3
2,917,477	-		IAI47_13770	0.64	-3.4
2,917,477	-		IAI47_13770	0.64	-0.7
2,917,477	-		IAI47_13770	0.64	-3.8
2,917,477	-		IAI47_13770	0.64	-1.7
2,917,579	+		IAI47_13770	0.72	-1.7
2,917,579	+		IAI47_13770	0.72	-2.8
2,917,588	+		IAI47_13770	0.73	-2.0
2,917,589	-		IAI47_13770	0.73	-0.7
2,917,607	+		IAI47_13770	0.74	-2.3
2,917,708	+		IAI47_13770	0.82	-5.0
2,917,708	+		IAI47_13770	0.82	-1.7
2,917,708	+		IAI47_13770	0.82	-1.7
2,917,708	+		IAI47_13770	0.82	-3.0
2,917,713	+		IAI47_13770	0.82	-2.3
2,917,713	+		IAI47_13770	0.82	-3.1
2,917,722	+		IAI47_13770	0.83	-2.3
2,917,747	+		IAI47_13770	0.85	-2.0
2,917,747	+		IAI47_13770	0.85	-1.3
2,917,748	-		IAI47_13770	0.85	-3.4
2,917,748	-		IAI47_13770	0.85	-2.8
2,917,748	-		IAI47_13770	0.85	-4.0
2,917,748	-		IAI47_13770	0.85	-2.3
2,917,794	+		IAI47_13770	0.89	-2.0
2,917,794	+		IAI47_13770	0.89	-3.3
2,917,795	-		IAI47_13770	0.89	+0.3
2,917,819	-				-2.7
2,917,891	+				-5.6
2,917,902	+				-2.7
2,917,902	+				-2.5
2,917,902	+				-3.0
2,917,902	+				-0.7
2,917,903	-				-2.7
2,917,903	-				-2.7
2,917,976	+				-1.7
2,917,976	+				+0.5
2,917,976	+				-2.0
2,918,002	+				-1.0
2,918,081	+				+1.0
2,918,081	+				+1.9
2,918,206	-				-0.5
2,918,210	+				-0.7
2,918,211	-				-0.8
2,918,211	-				-1.7
2,918,211	-				-0.8
2,918,211	-				+0.2
2,918,215	+				+1.1
2,918,215	+				+0.6
2,918,216	-				+0.3
2,918,216	-				+0.1
2,918,216	-				+0.7
2,918,216	-				-2.0
2,918,216	-				-0.1
2,918,216	-				+0.3
2,918,216	-				+0.8
2,918,216	-				+0.3
2,918,221	+				+0.1
2,918,221	+				-0.3
2,918,221	+				+0.2
2,918,221	+				+0.2
2,918,222	-				+0.9
2,918,222	-				+0.3
2,918,223	+				+0.9
2,918,223	+				-0.6
2,918,223	+				-0.5
2,918,224	-				-1.8
2,918,224	-				+0.7
2,918,255	+				-0.7
2,918,255	+				+0.5
2,918,256	-				-1.5
2,918,256	-				-1.7
2,918,280	+				+2.0
2,918,287	+				+0.3
2,918,287	+				-3.4
2,918,287	+				+0.3
2,918,288	-				+0.3
2,918,288	-				-1.3
2,918,311	+				+0.0
2,918,311	+				+1.9
2,918,312	-				+0.3
2,918,312	-				-2.5
2,918,312	-				-1.0
2,918,420	-		IAI47_13775	0.17	-1.2
2,918,420	-		IAI47_13775	0.17	-0.8
2,918,420	-		IAI47_13775	0.17	-0.0
2,918,420	-		IAI47_13775	0.17	+0.3
2,918,420	-		IAI47_13775	0.17	-0.2
2,918,566	+		IAI47_13775	0.35	+0.3
2,918,567	-		IAI47_13775	0.36	-1.5
2,918,729	+		IAI47_13775	0.56	+0.0
2,918,729	+		IAI47_13775	0.56	+0.3
2,918,730	-		IAI47_13775	0.56	+0.4
2,918,738	+		IAI47_13775	0.57	+0.9
2,918,750	+		IAI47_13775	0.59	+0.3
2,918,751	-		IAI47_13775	0.59	-0.0
2,918,751	-		IAI47_13775	0.59	-0.3
2,918,764	+		IAI47_13775	0.61	-0.1
2,918,765	-		IAI47_13775	0.61	-0.8
2,918,789	+		IAI47_13775	0.64	+0.7
2,918,860	+		IAI47_13775	0.73	+0.3
2,918,860	+		IAI47_13775	0.73	-1.2
2,918,861	-		IAI47_13775	0.73	-0.9
2,918,871	-		IAI47_13775	0.74	+0.6
2,918,871	-		IAI47_13775	0.74	+0.1
2,918,878	+		IAI47_13775	0.75	-1.0
2,918,879	-		IAI47_13775	0.75	+0.1
2,918,918	+		IAI47_13775	0.80	+0.9