Strain Fitness in Pantoea sp. MT58 around IAI47_13030

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
2,753,633	+		IAI47_13020	0.66	+0.6
2,753,633	+		IAI47_13020	0.66	+0.2
2,753,634	-		IAI47_13020	0.67	-0.4
2,753,663	+		IAI47_13020	0.69	+1.3
2,753,663	+		IAI47_13020	0.69	+0.3
2,753,664	-		IAI47_13020	0.69	-0.6
2,753,675	+		IAI47_13020	0.70	-0.5
2,753,676	-		IAI47_13020	0.70	+0.6
2,753,677	+		IAI47_13020	0.70	-1.5
2,753,677	+		IAI47_13020	0.70	-0.1
2,753,677	+		IAI47_13020	0.70	-1.8
2,753,677	+		IAI47_13020	0.70	+0.5
2,753,678	-		IAI47_13020	0.70	-1.2
2,753,678	-		IAI47_13020	0.70	+0.6
2,753,678	-		IAI47_13020	0.70	-0.8
2,753,702	+		IAI47_13020	0.73	+0.3
2,753,702	+		IAI47_13020	0.73	-0.1
2,753,703	-		IAI47_13020	0.73	+1.3
2,753,712	+		IAI47_13020	0.73	+0.4
2,753,713	-		IAI47_13020	0.74	+0.6
2,753,721	-		IAI47_13020	0.74	+1.3
2,753,747	-		IAI47_13020	0.76	-0.4
2,753,892	-		IAI47_13020	0.89	-0.8
2,753,910	+				+1.3
2,753,910	+				+1.4
2,753,911	-				+0.5
2,753,990	+				-0.4
2,753,991	-				-1.4
2,753,998	+				-0.5
2,753,998	+				-0.4
2,754,017	+				-0.1
2,754,017	+				-0.2
2,754,017	+				+0.3
2,754,018	-				+0.7
2,754,018	-				-1.8
2,754,018	-				+0.3
2,754,025	+				-0.3
2,754,054	+				-0.4
2,754,054	+				+0.7
2,754,054	+				-0.2
2,754,054	+				-0.3
2,754,055	-				+1.9
2,754,055	-				-0.9
2,754,055	-				+0.3
2,754,055	-				-0.2
2,754,142	+		IAI47_13025	0.18	-0.7
2,754,142	+		IAI47_13025	0.18	+0.6
2,754,142	+		IAI47_13025	0.18	-0.1
2,754,142	+		IAI47_13025	0.18	-1.0
2,754,142	+		IAI47_13025	0.18	+1.4
2,754,142	+		IAI47_13025	0.18	-0.9
2,754,143	-		IAI47_13025	0.19	+1.3
2,754,143	-		IAI47_13025	0.19	-0.4
2,754,143	-		IAI47_13025	0.19	+0.3
2,754,143	-		IAI47_13025	0.19	-0.7
2,754,143	-		IAI47_13025	0.19	+1.3
2,754,153	-		IAI47_13025	0.21	-0.5
2,754,163	+		IAI47_13025	0.23	+1.3
2,754,163	+		IAI47_13025	0.23	+0.3
2,754,163	+		IAI47_13025	0.23	-1.3
2,754,163	+		IAI47_13025	0.23	-0.4
2,754,163	+		IAI47_13025	0.23	+0.7
2,754,163	+		IAI47_13025	0.23	-0.1
2,754,164	-		IAI47_13025	0.23	-0.2
2,754,164	-		IAI47_13025	0.23	+0.3
2,754,164	-		IAI47_13025	0.23	-0.7
2,754,164	-		IAI47_13025	0.23	+0.3
2,754,195	+		IAI47_13025	0.30	-0.7
2,754,196	-		IAI47_13025	0.30	+0.3
2,754,196	-		IAI47_13025	0.30	+0.8
2,754,224	-		IAI47_13025	0.36	+0.7
2,754,225	+		IAI47_13025	0.36	+0.6
2,754,225	+		IAI47_13025	0.36	-0.4
2,754,225	+		IAI47_13025	0.36	+1.6
2,754,225	+		IAI47_13025	0.36	+0.3
2,754,225	+		IAI47_13025	0.36	-1.1
2,754,225	+		IAI47_13025	0.36	-1.3
2,754,225	+		IAI47_13025	0.36	+0.3
2,754,225	+		IAI47_13025	0.36	-0.4
2,754,225	+		IAI47_13025	0.36	+1.3
2,754,225	+		IAI47_13025	0.36	+0.5
2,754,226	+		IAI47_13025	0.36	+0.5
2,754,226	-		IAI47_13025	0.36	+1.7
2,754,226	-		IAI47_13025	0.36	-0.1
2,754,226	-		IAI47_13025	0.36	+0.3
2,754,226	-		IAI47_13025	0.36	+0.7
2,754,226	-		IAI47_13025	0.36	+0.3
2,754,226	-		IAI47_13025	0.36	-0.3
2,754,226	-		IAI47_13025	0.36	-0.4
2,754,226	-		IAI47_13025	0.36	-0.2
2,754,226	-		IAI47_13025	0.36	-0.4
2,754,226	-		IAI47_13025	0.36	-2.3
2,754,226	-		IAI47_13025	0.36	+0.3
2,754,226	-		IAI47_13025	0.36	-0.4
2,754,226	-		IAI47_13025	0.36	-0.4
2,754,226	-		IAI47_13025	0.36	-0.3
2,754,226	-		IAI47_13025	0.36	+0.3
2,754,226	-		IAI47_13025	0.36	+0.3
2,754,226	-		IAI47_13025	0.36	-0.4
2,754,255	+		IAI47_13025	0.43	+0.1
2,754,255	+		IAI47_13025	0.43	+1.1
2,754,256	-		IAI47_13025	0.43	-0.5
2,754,292	+		IAI47_13025	0.50	+0.4
2,754,399	+		IAI47_13025	0.73	+0.2
2,754,400	-		IAI47_13025	0.74	+0.8
2,754,400	-		IAI47_13025	0.74	+1.9
2,754,451	+		IAI47_13025	0.84	+0.4
2,754,451	+		IAI47_13025	0.84	-1.5
2,754,452	-		IAI47_13025	0.85	+1.9
2,754,452	-		IAI47_13025	0.85	-2.3
2,754,452	-		IAI47_13025	0.85	+0.6
2,754,496	+				-1.1
2,754,496	+				+0.1
2,754,496	+				+0.7
2,754,497	-				-2.0
2,754,523	+				+0.7
2,754,524	-				+0.1
2,754,524	-				+0.3
2,754,524	-				-2.2
2,754,524	-				+1.0
2,754,524	-				+2.9
2,754,560	+				-0.4
2,754,574	+				-0.1
2,754,574	+				-1.2
2,754,574	+				+0.5
2,754,574	+				-0.5
2,754,575	-				+0.5
2,754,575	-				-1.2
2,754,575	-				-0.4
2,754,575	-				+0.7
2,754,575	-				-0.1
2,754,576	+				+0.0
2,754,576	+				+0.1
2,754,576	+				-1.7
2,754,576	+				-0.3
2,754,577	-				-0.1
2,754,577	-				-0.4
2,754,577	-				-0.3
2,754,577	-				+0.7
2,754,577	-				-2.2
2,754,577	-				+2.9
2,754,577	-				+0.5
2,754,577	-				-0.4
2,754,577	-				+0.3
2,754,577	-				-0.3
2,754,577	-				+0.9
2,754,578	+				-0.7
2,754,578	+				-0.3
2,754,579	-				+1.0
2,754,579	-				-0.1
2,754,579	-				-0.0
2,754,579	-				+1.0
2,754,611	-				+0.7
2,754,611	-				-0.7
2,754,630	-				-0.1
2,754,656	-				-0.0
2,754,670	+				-0.5
2,754,743	+		IAI47_13030	0.17	-0.1
2,754,744	-		IAI47_13030	0.17	-0.3
2,754,744	-		IAI47_13030	0.17	-0.2
2,754,744	-		IAI47_13030	0.17	-0.7
2,754,744	-		IAI47_13030	0.17	-1.3
2,754,744	-		IAI47_13030	0.17	-0.1
2,754,829	+		IAI47_13030	0.27	-0.9
2,754,830	-		IAI47_13030	0.27	-1.0
2,754,881	-		IAI47_13030	0.33	+0.7
2,754,898	+		IAI47_13030	0.35	+0.3
2,754,898	+		IAI47_13030	0.35	-1.7
2,754,898	+		IAI47_13030	0.35	-0.5
2,754,898	+		IAI47_13030	0.35	-0.4
2,754,898	+		IAI47_13030	0.35	-1.3
2,754,898	+		IAI47_13030	0.35	+0.7
2,754,899	-		IAI47_13030	0.35	+0.9
2,754,899	-		IAI47_13030	0.35	-1.1
2,754,914	+		IAI47_13030	0.37	-0.5
2,754,914	+		IAI47_13030	0.37	+0.1
2,754,914	+		IAI47_13030	0.37	-1.3
2,754,967	+		IAI47_13030	0.43	+0.3
2,754,967	+		IAI47_13030	0.43	-0.6
2,754,968	-		IAI47_13030	0.44	-0.3
2,754,968	-		IAI47_13030	0.44	-0.4
2,754,968	-		IAI47_13030	0.44	-0.3
2,754,984	+		IAI47_13030	0.46	-0.2
2,754,985	-		IAI47_13030	0.46	-0.8
2,754,985	-		IAI47_13030	0.46	-0.5
2,754,985	-		IAI47_13030	0.46	+1.8
2,754,985	-		IAI47_13030	0.46	-0.5
2,755,178	-		IAI47_13030	0.68	+0.7
2,755,290	+		IAI47_13030	0.82	-1.8
2,755,291	-		IAI47_13030	0.82	+0.7
2,755,348	-		IAI47_13030	0.89	-1.6
2,755,348	-		IAI47_13030	0.89	-0.3
2,755,352	+		IAI47_13030	0.89	+1.9
2,755,352	+		IAI47_13030	0.89	-1.0
2,755,352	+		IAI47_13030	0.89	+0.4
2,755,374	+				-0.5
2,755,375	-				-1.6
2,755,375	-				+0.7
2,755,375	-				+0.3
2,755,402	+				+0.3
2,755,409	-				+0.9
2,755,409	-				-0.4
2,755,426	+				+0.1
2,755,426	+				+1.4
2,755,426	+				-0.4
2,755,427	-				+0.3
2,755,427	-				-0.6
2,755,427	-				-0.8
2,755,427	-				-0.3
2,755,438	+				+0.7
2,755,438	+				-0.5
2,755,439	-				-0.9
2,755,439	-				-0.1
2,755,439	-				+0.2
2,755,476	+				-0.9
2,755,476	+				-1.7
2,755,476	+				-2.7
2,755,477	-				+0.7
2,755,477	-				-0.6
2,755,558	-		IAI47_13035	0.12	-0.1
2,755,558	-		IAI47_13035	0.12	+0.1
2,755,628	+		IAI47_13035	0.19	+1.3
2,755,628	+		IAI47_13035	0.19	+0.8
2,755,628	+		IAI47_13035	0.19	-0.4
2,755,628	+		IAI47_13035	0.19	-1.3
2,755,629	-		IAI47_13035	0.20	+0.6
2,755,629	-		IAI47_13035	0.20	-0.9
2,755,761	-		IAI47_13035	0.33	-0.0
2,755,761	-		IAI47_13035	0.33	-0.7
2,755,784	+		IAI47_13035	0.36	-0.1
2,755,784	+		IAI47_13035	0.36	+0.7
2,755,784	+		IAI47_13035	0.36	-1.9
2,755,785	-		IAI47_13035	0.36	+0.6
2,755,785	-		IAI47_13035	0.36	-1.1
2,755,800	+		IAI47_13035	0.37	-0.4
2,755,800	+		IAI47_13035	0.37	+0.2
2,755,801	-		IAI47_13035	0.37	+0.6
2,755,801	-		IAI47_13035	0.37	+0.3
2,755,811	+		IAI47_13035	0.38	-0.7
2,755,812	-		IAI47_13035	0.39	-0.1
2,755,812	-		IAI47_13035	0.39	+0.3
2,755,818	-		IAI47_13035	0.39	+0.3
2,755,818	-		IAI47_13035	0.39	+1.7
2,755,832	+		IAI47_13035	0.41	+1.8
2,755,832	+		IAI47_13035	0.41	-0.4
2,755,833	-		IAI47_13035	0.41	+0.1
2,755,833	-		IAI47_13035	0.41	-0.7
2,755,833	-		IAI47_13035	0.41	-0.3
2,755,833	-		IAI47_13035	0.41	+0.6
2,755,833	-		IAI47_13035	0.41	-1.4
2,755,833	-		IAI47_13035	0.41	+3.1
2,755,833	-		IAI47_13035	0.41	-0.5
2,755,842	+		IAI47_13035	0.42	+0.6
2,755,843	-		IAI47_13035	0.42	-0.1
2,755,850	+		IAI47_13035	0.42	+0.7
2,755,851	-		IAI47_13035	0.43	-0.2
2,755,851	-		IAI47_13035	0.43	-0.2
2,755,877	-		IAI47_13035	0.45	-1.2
2,755,940	+		IAI47_13035	0.52	-1.4
2,756,016	+		IAI47_13035	0.60	+0.5
2,756,016	+		IAI47_13035	0.60	+2.5
2,756,016	+		IAI47_13035	0.60	-1.9
2,756,016	+		IAI47_13035	0.60	+0.0
2,756,016	+		IAI47_13035	0.60	-1.1
2,756,016	+		IAI47_13035	0.60	+0.1
2,756,041	-		IAI47_13035	0.62	-0.7
2,756,080	+		IAI47_13035	0.66	-1.3
2,756,081	-		IAI47_13035	0.66	+0.3
2,756,099	+		IAI47_13035	0.68	-0.4
2,756,099	+		IAI47_13035	0.68	+1.1
2,756,099	+		IAI47_13035	0.68	+2.3
2,756,100	-		IAI47_13035	0.68	-0.1
2,756,100	-		IAI47_13035	0.68	-0.5
2,756,111	+		IAI47_13035	0.70	-0.5
2,756,111	+		IAI47_13035	0.70	+0.1
2,756,112	-		IAI47_13035	0.70	-0.4
2,756,112	-		IAI47_13035	0.70	-0.6
2,756,112	-		IAI47_13035	0.70	-0.7
2,756,112	-		IAI47_13035	0.70	-1.5
2,756,138	+		IAI47_13035	0.72	-0.2
2,756,138	+		IAI47_13035	0.72	-0.3
2,756,138	+		IAI47_13035	0.72	-0.3
2,756,139	-		IAI47_13035	0.72	+1.0
2,756,198	+		IAI47_13035	0.79	+0.4
2,756,198	+		IAI47_13035	0.79	+0.5
2,756,198	+		IAI47_13035	0.79	-0.9
2,756,232	+		IAI47_13035	0.82	-0.9
2,756,232	+		IAI47_13035	0.82	-1.0
2,756,233	-		IAI47_13035	0.82	-0.3
2,756,266	+		IAI47_13035	0.86	-0.7
2,756,285	+		IAI47_13035	0.88	-0.4
2,756,285	+		IAI47_13035	0.88	-1.8
2,756,285	+		IAI47_13035	0.88	-0.0
2,756,285	+		IAI47_13035	0.88	-0.1
2,756,285	+		IAI47_13035	0.88	-0.7
2,756,285	+		IAI47_13035	0.88	-1.0
2,756,285	+		IAI47_13035	0.88	+0.3
2,756,285	+		IAI47_13035	0.88	-0.3
2,756,285	+		IAI47_13035	0.88	-0.0
2,756,285	+		IAI47_13035	0.88	+0.0
2,756,286	-		IAI47_13035	0.88	-0.1
2,756,286	-		IAI47_13035	0.88	+0.3
2,756,286	-		IAI47_13035	0.88	+0.9
2,756,286	-		IAI47_13035	0.88	-1.1
2,756,286	-		IAI47_13035	0.88	-1.6
2,756,404	-				-0.4
2,756,404	-				+0.6
2,756,404	-				+0.0
2,756,415	-				+1.0