Strain Fitness in Pantoea sp. MT58 around IAI47_09575

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
2,024,096	+		IAI47_09570	0.39	-0.2
2,024,199	-		IAI47_09570	0.46	-0.1
2,024,229	+		IAI47_09570	0.48	-0.5
2,024,230	-		IAI47_09570	0.48	+0.2
2,024,328	+		IAI47_09570	0.55	-0.3
2,024,328	+		IAI47_09570	0.55	-1.1
2,024,328	+		IAI47_09570	0.55	-0.5
2,024,328	+		IAI47_09570	0.55	+0.4
2,024,328	+		IAI47_09570	0.55	-0.5
2,024,328	+		IAI47_09570	0.55	-1.1
2,024,328	+		IAI47_09570	0.55	-0.6
2,024,328	+		IAI47_09570	0.55	-1.0
2,024,328	+		IAI47_09570	0.55	+0.6
2,024,328	+		IAI47_09570	0.55	+0.9
2,024,329	-		IAI47_09570	0.55	-1.1
2,024,329	-		IAI47_09570	0.55	-0.5
2,024,329	-		IAI47_09570	0.55	+2.0
2,024,329	-		IAI47_09570	0.55	+0.2
2,024,329	-		IAI47_09570	0.55	-1.2
2,024,329	-		IAI47_09570	0.55	+0.2
2,024,329	-		IAI47_09570	0.55	+0.2
2,024,330	+		IAI47_09570	0.55	+0.1
2,024,330	+		IAI47_09570	0.55	+2.6
2,024,330	+		IAI47_09570	0.55	-1.1
2,024,331	-		IAI47_09570	0.56	-0.3
2,024,331	-		IAI47_09570	0.56	-2.1
2,024,331	-		IAI47_09570	0.56	-0.8
2,024,331	-		IAI47_09570	0.56	+0.2
2,024,331	-		IAI47_09570	0.56	-1.1
2,024,331	-		IAI47_09570	0.56	-0.5
2,024,339	+		IAI47_09570	0.56	+0.8
2,024,340	-		IAI47_09570	0.56	+0.7
2,024,340	-		IAI47_09570	0.56	+1.5
2,024,340	-		IAI47_09570	0.56	+0.7
2,024,340	-		IAI47_09570	0.56	-0.0
2,024,340	-		IAI47_09570	0.56	-0.2
2,024,469	-		IAI47_09570	0.65	+0.6
2,024,489	+		IAI47_09570	0.67	-1.3
2,024,489	+		IAI47_09570	0.67	-0.0
2,024,489	+		IAI47_09570	0.67	+0.4
2,024,489	+		IAI47_09570	0.67	+0.6
2,024,489	+		IAI47_09570	0.67	+0.6
2,024,489	+		IAI47_09570	0.67	-0.2
2,024,490	-		IAI47_09570	0.67	+0.2
2,024,490	-		IAI47_09570	0.67	+0.5
2,024,490	-		IAI47_09570	0.67	-0.1
2,024,490	-		IAI47_09570	0.67	+0.8
2,024,493	-		IAI47_09570	0.67	-0.2
2,024,493	-		IAI47_09570	0.67	+0.7
2,024,502	+		IAI47_09570	0.68	-0.5
2,024,655	+		IAI47_09570	0.79	-1.5
2,024,655	+		IAI47_09570	0.79	-0.8
2,024,656	-		IAI47_09570	0.79	+0.2
2,024,656	-		IAI47_09570	0.79	-0.5
2,024,656	-		IAI47_09570	0.79	+0.6
2,024,656	-		IAI47_09570	0.79	+0.2
2,024,656	-		IAI47_09570	0.79	-0.4
2,024,676	+		IAI47_09570	0.80	+0.8
2,024,730	-		IAI47_09570	0.84	-0.2
2,024,851	-				-1.3
2,024,851	-				-1.6
2,024,851	-				+0.2
2,024,946	+				+1.9
2,024,946	+				-0.8
2,024,947	-				+0.2
2,024,965	+				+0.2
2,024,965	+				-0.5
2,024,966	-				+0.7
2,024,966	-				-0.8
2,025,057	+				-1.8
2,025,058	-				-0.6
2,025,127	+		IAI47_09575	0.13	-0.8
2,025,160	+		IAI47_09575	0.17	-1.8
2,025,217	-		IAI47_09575	0.23	+0.2
2,025,305	+		IAI47_09575	0.32	-1.1
2,025,305	+		IAI47_09575	0.32	-0.3
2,025,306	-		IAI47_09575	0.32	+0.2
2,025,342	+		IAI47_09575	0.36	-0.8
2,025,342	+		IAI47_09575	0.36	-2.2
2,025,342	+		IAI47_09575	0.36	-2.1
2,025,343	-		IAI47_09575	0.36	-1.8
2,025,343	-		IAI47_09575	0.36	-1.8
2,025,343	-		IAI47_09575	0.36	-2.5
2,025,343	-		IAI47_09575	0.36	-0.2
2,025,343	-		IAI47_09575	0.36	-0.8
2,025,362	+		IAI47_09575	0.38	-1.7
2,025,492	+		IAI47_09575	0.52	-1.5
2,025,493	-		IAI47_09575	0.52	-0.3
2,025,546	+		IAI47_09575	0.57	-1.0
2,025,546	+		IAI47_09575	0.57	-1.2
2,025,546	+		IAI47_09575	0.57	-2.3
2,025,546	+		IAI47_09575	0.57	+0.2
2,025,546	+		IAI47_09575	0.57	-1.6
2,025,547	-		IAI47_09575	0.57	-1.3
2,025,547	-		IAI47_09575	0.57	-2.1
2,025,547	-		IAI47_09575	0.57	-3.5
2,025,547	-		IAI47_09575	0.57	-1.8
2,025,693	+		IAI47_09575	0.73	-1.1
2,025,694	-		IAI47_09575	0.73	-1.2
2,025,719	+		IAI47_09575	0.75	-2.1
2,025,719	+		IAI47_09575	0.75	+0.7
2,025,720	-		IAI47_09575	0.75	+0.4
2,025,720	-		IAI47_09575	0.75	+0.2
2,025,751	-		IAI47_09575	0.79	-0.8
2,025,777	+		IAI47_09575	0.81	-0.6
2,025,818	+		IAI47_09575	0.86	+0.6
2,025,819	-		IAI47_09575	0.86	-0.8
2,025,830	+		IAI47_09575	0.87	-1.9
2,025,835	-		IAI47_09575	0.87	-0.6
2,025,835	-		IAI47_09575	0.87	-0.9
2,025,835	-		IAI47_09575	0.87	-0.3
2,025,835	-		IAI47_09575	0.87	-2.1
2,025,835	-		IAI47_09575	0.87	+0.2
2,025,849	+		IAI47_09575	0.89	-3.3
2,025,849	+		IAI47_09575	0.89	-1.6
2,025,849	+		IAI47_09575	0.89	-1.3
2,025,850	-		IAI47_09575	0.89	-3.2
2,025,850	-		IAI47_09575	0.89	-2.8
2,025,878	+				+0.2
2,025,878	+				-1.2
2,025,937	-				+0.0
2,025,937	-				-1.3
2,025,937	-				-1.6
2,025,993	+				-1.6
2,025,994	-				+0.2
2,025,994	-				-0.8
2,025,994	-				-1.1
2,025,994	-				+0.7
2,025,998	+				+1.0
2,025,998	+				-1.0
2,025,998	+				+0.4
2,025,998	+				+1.0
2,025,998	+				-2.6
2,025,998	+				+0.2
2,025,998	+				+0.0
2,025,999	-				+0.5
2,025,999	-				+0.6
2,025,999	-				+2.6
2,025,999	-				-0.3
2,025,999	-				-1.9
2,025,999	-				-2.3
2,025,999	-				-2.3
2,026,006	-				-1.0
2,026,006	-				-1.3
2,026,043	-				-0.2
2,026,100	-				-1.0
2,026,137	-				+1.9
2,026,137	-				+0.8
2,026,137	-				-0.8
2,026,137	-				+0.4
2,026,218	-		IAI47_09580	0.19	+1.0
2,026,222	-		IAI47_09580	0.20	+0.7
2,026,423	-		IAI47_09580	0.47	-0.8
2,026,588	-		IAI47_09580	0.69	+0.2
2,026,589	+		IAI47_09580	0.69	-0.2
2,026,590	-		IAI47_09580	0.69	-0.5
2,026,692	+		IAI47_09580	0.82	+0.1
2,026,692	+		IAI47_09580	0.82	-0.4
2,026,693	-		IAI47_09580	0.82	+0.7
2,026,693	-		IAI47_09580	0.82	-0.4
2,026,795	-				+1.2
2,026,801	+				+0.2
2,026,824	+				-1.7
2,026,824	+				+0.2
2,026,843	-				-0.1
2,026,843	-				-0.5
2,026,847	-				-0.9
2,026,847	-				-0.0
2,026,847	-				-1.0
2,026,847	-				+2.2
2,026,902	+				-1.5
2,026,918	-				-0.8
2,026,918	-				+0.5
2,026,918	-				+0.5
2,026,928	+				-0.6