Strain Fitness in Pantoea sp. MT58 around IAI47_09190

Experiment: Ying_Nucleobase14 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_09180 and IAI47_09185 are separated by 14 nucleotidesIAI47_09185 and IAI47_09190 overlap by 1 nucleotidesIAI47_09190 and IAI47_09195 are separated by 245 nucleotides IAI47_09180: IAI47_09180 - anthranilate phosphoribosyltransferase, at 1,934,167 to 1,935,165 _09180 IAI47_09185: IAI47_09185 - glutamine amidotransferase, at 1,935,180 to 1,935,761 _09185 IAI47_09190: IAI47_09190 - anthranilate synthase component 1, at 1,935,761 to 1,937,326 _09190 IAI47_09195: IAI47_09195 - PHP domain-containing protein, at 1,937,572 to 1,938,489 _09195 Position (kb) 1935 1936 1937 1938Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1934.772 kb on + strand, within IAI47_09180at 1934.772 kb on + strand, within IAI47_09180at 1934.772 kb on + strand, within IAI47_09180at 1934.773 kb on - strand, within IAI47_09180at 1934.773 kb on - strand, within IAI47_09180at 1934.781 kb on + strand, within IAI47_09180at 1934.781 kb on + strand, within IAI47_09180at 1934.781 kb on + strand, within IAI47_09180at 1934.782 kb on - strand, within IAI47_09180at 1934.782 kb on - strand, within IAI47_09180at 1934.782 kb on - strand, within IAI47_09180at 1934.785 kb on - strand, within IAI47_09180at 1934.785 kb on - strand, within IAI47_09180at 1934.898 kb on + strand, within IAI47_09180at 1934.898 kb on + strand, within IAI47_09180at 1934.899 kb on - strand, within IAI47_09180at 1934.899 kb on - strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.902 kb on - strand, within IAI47_09180at 1934.902 kb on - strand, within IAI47_09180at 1934.902 kb on - strand, within IAI47_09180at 1934.911 kb on - strand, within IAI47_09180at 1934.911 kb on - strand, within IAI47_09180at 1934.911 kb on - strand, within IAI47_09180at 1935.031 kb on + strand, within IAI47_09180at 1935.031 kb on + strand, within IAI47_09180at 1935.087 kb on + strandat 1935.087 kb on + strandat 1935.087 kb on + strandat 1935.087 kb on + strandat 1935.087 kb on + strandat 1935.087 kb on + strandat 1935.088 kb on - strandat 1935.088 kb on - strandat 1935.088 kb on - strandat 1935.088 kb on - strandat 1935.140 kb on + strandat 1935.169 kb on + strandat 1935.182 kb on - strandat 1935.313 kb on + strand, within IAI47_09185at 1935.314 kb on - strand, within IAI47_09185at 1935.389 kb on + strand, within IAI47_09185at 1935.390 kb on - strand, within IAI47_09185at 1935.481 kb on + strand, within IAI47_09185at 1935.481 kb on + strand, within IAI47_09185at 1935.516 kb on - strand, within IAI47_09185at 1935.516 kb on - strand, within IAI47_09185at 1935.521 kb on + strand, within IAI47_09185at 1935.522 kb on - strand, within IAI47_09185at 1935.522 kb on - strand, within IAI47_09185at 1935.563 kb on + strand, within IAI47_09185at 1935.564 kb on - strand, within IAI47_09185at 1935.564 kb on - strand, within IAI47_09185at 1935.643 kb on - strand, within IAI47_09185at 1935.643 kb on - strand, within IAI47_09185at 1935.716 kb on + strandat 1935.716 kb on + strandat 1935.717 kb on - strandat 1935.717 kb on - strandat 1935.717 kb on - strandat 1935.718 kb on + strandat 1935.718 kb on + strandat 1935.719 kb on - strandat 1935.719 kb on - strandat 1935.719 kb on - strandat 1935.719 kb on - strandat 1935.722 kb on + strandat 1935.722 kb on + strandat 1935.723 kb on - strandat 1935.753 kb on - strandat 1935.853 kb on + strandat 1935.853 kb on + strandat 1935.854 kb on - strandat 1935.923 kb on - strand, within IAI47_09190at 1935.923 kb on - strand, within IAI47_09190at 1935.928 kb on + strand, within IAI47_09190at 1935.928 kb on + strand, within IAI47_09190at 1935.929 kb on - strand, within IAI47_09190at 1935.929 kb on - strand, within IAI47_09190at 1935.929 kb on - strand, within IAI47_09190at 1935.929 kb on - strand, within IAI47_09190at 1935.929 kb on - strand, within IAI47_09190at 1935.934 kb on + strand, within IAI47_09190at 1935.960 kb on + strand, within IAI47_09190at 1935.961 kb on - strand, within IAI47_09190at 1935.961 kb on - strand, within IAI47_09190at 1935.961 kb on - strand, within IAI47_09190at 1935.961 kb on - strand, within IAI47_09190at 1935.978 kb on + strand, within IAI47_09190at 1936.046 kb on + strand, within IAI47_09190at 1936.046 kb on + strand, within IAI47_09190at 1936.046 kb on + strand, within IAI47_09190at 1936.063 kb on + strand, within IAI47_09190at 1936.063 kb on + strand, within IAI47_09190at 1936.063 kb on + strand, within IAI47_09190at 1936.063 kb on + strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.146 kb on + strand, within IAI47_09190at 1936.147 kb on - strand, within IAI47_09190at 1936.176 kb on + strand, within IAI47_09190at 1936.176 kb on + strand, within IAI47_09190at 1936.177 kb on - strand, within IAI47_09190at 1936.177 kb on - strandat 1936.255 kb on + strand, within IAI47_09190at 1936.255 kb on + strand, within IAI47_09190at 1936.255 kb on + strand, within IAI47_09190at 1936.256 kb on - strand, within IAI47_09190at 1936.383 kb on + strand, within IAI47_09190at 1936.383 kb on + strand, within IAI47_09190at 1936.449 kb on + strand, within IAI47_09190at 1936.449 kb on + strand, within IAI47_09190at 1936.449 kb on + strand, within IAI47_09190at 1936.450 kb on - strand, within IAI47_09190at 1936.450 kb on - strand, within IAI47_09190at 1936.483 kb on - strand, within IAI47_09190at 1936.590 kb on + strand, within IAI47_09190at 1936.591 kb on - strand, within IAI47_09190at 1936.781 kb on + strand, within IAI47_09190at 1936.782 kb on - strand, within IAI47_09190at 1936.782 kb on - strand, within IAI47_09190at 1936.782 kb on - strand, within IAI47_09190at 1936.798 kb on - strand, within IAI47_09190at 1936.798 kb on - strand, within IAI47_09190at 1936.807 kb on - strand, within IAI47_09190at 1936.828 kb on + strand, within IAI47_09190at 1936.828 kb on + strand, within IAI47_09190at 1936.828 kb on + strand, within IAI47_09190at 1936.829 kb on - strand, within IAI47_09190at 1936.829 kb on - strand, within IAI47_09190at 1936.869 kb on + strand, within IAI47_09190at 1936.869 kb on + strand, within IAI47_09190at 1936.870 kb on - strand, within IAI47_09190at 1936.870 kb on - strand, within IAI47_09190at 1936.870 kb on - strand, within IAI47_09190at 1936.870 kb on - strand, within IAI47_09190at 1936.921 kb on + strand, within IAI47_09190at 1936.921 kb on + strand, within IAI47_09190at 1936.936 kb on + strand, within IAI47_09190at 1936.937 kb on - strand, within IAI47_09190at 1936.937 kb on - strand, within IAI47_09190at 1936.937 kb on - strand, within IAI47_09190at 1936.937 kb on - strand, within IAI47_09190at 1936.969 kb on + strand, within IAI47_09190at 1937.128 kb on + strand, within IAI47_09190at 1937.128 kb on + strand, within IAI47_09190at 1937.129 kb on - strand, within IAI47_09190at 1937.129 kb on - strand, within IAI47_09190at 1937.308 kb on + strandat 1937.309 kb on - strandat 1937.309 kb on - strandat 1937.381 kb on + strandat 1937.382 kb on - strandat 1937.382 kb on - strandat 1937.384 kb on + strandat 1937.384 kb on + strandat 1937.384 kb on + strandat 1937.384 kb on + strandat 1937.384 kb on + strandat 1937.385 kb on - strandat 1937.385 kb on - strandat 1937.385 kb on - strandat 1937.385 kb on - strandat 1937.385 kb on - strandat 1937.397 kb on - strandat 1937.427 kb on - strandat 1937.452 kb on + strandat 1937.464 kb on + strandat 1937.464 kb on + strandat 1937.464 kb on + strandat 1937.465 kb on - strandat 1937.465 kb on - strandat 1937.484 kb on - strandat 1937.491 kb on - strandat 1937.560 kb on - strandat 1937.585 kb on + strandat 1937.585 kb on + strandat 1937.588 kb on + strandat 1937.588 kb on + strandat 1937.588 kb on + strandat 1937.591 kb on + strandat 1937.591 kb on + strandat 1937.592 kb on - strandat 1937.592 kb on - strandat 1937.592 kb on - strandat 1937.639 kb on + strandat 1937.640 kb on - strandat 1937.640 kb on - strandat 1937.702 kb on + strand, within IAI47_09195at 1937.702 kb on + strand, within IAI47_09195at 1937.703 kb on - strand, within IAI47_09195at 1937.703 kb on - strand, within IAI47_09195at 1937.721 kb on - strand, within IAI47_09195at 1937.756 kb on + strand, within IAI47_09195at 1937.756 kb on + strand, within IAI47_09195at 1937.756 kb on + strand, within IAI47_09195at 1937.792 kb on + strand, within IAI47_09195at 1937.793 kb on - strand, within IAI47_09195at 1938.022 kb on - strand, within IAI47_09195at 1938.138 kb on + strand, within IAI47_09195at 1938.153 kb on + strand, within IAI47_09195at 1938.154 kb on - strand, within IAI47_09195at 1938.154 kb on - strand, within IAI47_09195at 1938.154 kb on - strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3
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1,934,772 + IAI47_09180 0.61 -1.3
1,934,772 + IAI47_09180 0.61 -4.3
1,934,772 + IAI47_09180 0.61 -3.2
1,934,773 - IAI47_09180 0.61 +0.2
1,934,773 - IAI47_09180 0.61 -2.6
1,934,781 + IAI47_09180 0.61 -2.9
1,934,781 + IAI47_09180 0.61 -4.2
1,934,781 + IAI47_09180 0.61 -3.3
1,934,782 - IAI47_09180 0.62 -1.3
1,934,782 - IAI47_09180 0.62 -1.8
1,934,782 - IAI47_09180 0.62 -2.1
1,934,785 - IAI47_09180 0.62 -2.1
1,934,785 - IAI47_09180 0.62 -3.5
1,934,898 + IAI47_09180 0.73 -2.9
1,934,898 + IAI47_09180 0.73 -3.8
1,934,899 - IAI47_09180 0.73 -4.4
1,934,899 - IAI47_09180 0.73 -2.9
1,934,901 + IAI47_09180 0.73 -2.3
1,934,901 + IAI47_09180 0.73 -2.9
1,934,901 + IAI47_09180 0.73 -2.3
1,934,901 + IAI47_09180 0.73 -2.3
1,934,901 + IAI47_09180 0.73 -3.8
1,934,901 + IAI47_09180 0.73 -2.8
1,934,901 + IAI47_09180 0.73 -2.3
1,934,902 - IAI47_09180 0.74 -3.5
1,934,902 - IAI47_09180 0.74 -2.3
1,934,902 - IAI47_09180 0.74 -2.3
1,934,911 - IAI47_09180 0.74 -3.3
1,934,911 - IAI47_09180 0.74 +0.2
1,934,911 - IAI47_09180 0.74 -3.7
1,935,031 + IAI47_09180 0.86 -3.5
1,935,031 + IAI47_09180 0.86 -2.9
1,935,087 + -2.6
1,935,087 + -2.3
1,935,087 + -2.3
1,935,087 + -4.2
1,935,087 + -0.8
1,935,087 + -1.8
1,935,088 - -3.6
1,935,088 - -0.8
1,935,088 - -2.3
1,935,088 - -3.1
1,935,140 + -2.9
1,935,169 + -3.2
1,935,182 - -0.0
1,935,313 + IAI47_09185 0.23 -2.6
1,935,314 - IAI47_09185 0.23 -2.8
1,935,389 + IAI47_09185 0.36 -1.8
1,935,390 - IAI47_09185 0.36 -3.1
1,935,481 + IAI47_09185 0.52 -2.3
1,935,481 + IAI47_09185 0.52 -1.3
1,935,516 - IAI47_09185 0.58 -3.1
1,935,516 - IAI47_09185 0.58 +0.2
1,935,521 + IAI47_09185 0.59 -2.9
1,935,522 - IAI47_09185 0.59 -3.2
1,935,522 - IAI47_09185 0.59 -3.3
1,935,563 + IAI47_09185 0.66 -3.2
1,935,564 - IAI47_09185 0.66 -0.8
1,935,564 - IAI47_09185 0.66 -1.8
1,935,643 - IAI47_09185 0.80 -3.5
1,935,643 - IAI47_09185 0.80 -2.8
1,935,716 + -3.5
1,935,716 + -1.8
1,935,717 - -2.6
1,935,717 - +1.2
1,935,717 - -1.1
1,935,718 + -2.3
1,935,718 + -2.1
1,935,719 - -3.3
1,935,719 - -2.8
1,935,719 - -0.8
1,935,719 - -2.6
1,935,722 + -3.8
1,935,722 + -3.1
1,935,723 - -3.7
1,935,753 - -0.8
1,935,853 + -3.9
1,935,853 + -0.8
1,935,854 - -3.2
1,935,923 - IAI47_09190 0.10 -1.8
1,935,923 - IAI47_09190 0.10 -3.1
1,935,928 + IAI47_09190 0.11 -2.3
1,935,928 + IAI47_09190 0.11 -2.6
1,935,929 - IAI47_09190 0.11 -1.8
1,935,929 - IAI47_09190 0.11 -4.3
1,935,929 - IAI47_09190 0.11 -1.8
1,935,929 - IAI47_09190 0.11 -2.3
1,935,929 - IAI47_09190 0.11 -3.5
1,935,934 + IAI47_09190 0.11 -3.1
1,935,960 + IAI47_09190 0.13 -3.6
1,935,961 - IAI47_09190 0.13 -3.8
1,935,961 - IAI47_09190 0.13 -3.9
1,935,961 - IAI47_09190 0.13 -0.3
1,935,961 - IAI47_09190 0.13 -2.3
1,935,978 + IAI47_09190 0.14 -2.6
1,936,046 + IAI47_09190 0.18 -3.1
1,936,046 + IAI47_09190 0.18 -1.8
1,936,046 + IAI47_09190 0.18 -2.3
1,936,063 + IAI47_09190 0.19 -2.3
1,936,063 + IAI47_09190 0.19 -4.5
1,936,063 + IAI47_09190 0.19 -3.7
1,936,063 + IAI47_09190 0.19 -5.8
1,936,064 - IAI47_09190 0.19 -3.7
1,936,064 - IAI47_09190 0.19 -4.5
1,936,064 - IAI47_09190 0.19 -3.2
1,936,064 - IAI47_09190 0.19 -3.1
1,936,064 - IAI47_09190 0.19 -4.1
1,936,064 - IAI47_09190 0.19 -1.3
1,936,146 + IAI47_09190 0.25 -2.9
1,936,147 - IAI47_09190 0.25 -3.5
1,936,176 + IAI47_09190 0.27 -3.8
1,936,176 + IAI47_09190 0.27 -2.9
1,936,177 - IAI47_09190 0.27 -1.3
1,936,177 - -1.3
1,936,255 + IAI47_09190 0.32 -1.3
1,936,255 + IAI47_09190 0.32 -2.9
1,936,255 + IAI47_09190 0.32 -2.1
1,936,256 - IAI47_09190 0.32 -4.3
1,936,383 + IAI47_09190 0.40 -3.5
1,936,383 + IAI47_09190 0.40 -2.8
1,936,449 + IAI47_09190 0.44 -2.6
1,936,449 + IAI47_09190 0.44 -3.3
1,936,449 + IAI47_09190 0.44 -3.2
1,936,450 - IAI47_09190 0.44 -2.2
1,936,450 - IAI47_09190 0.44 -4.2
1,936,483 - IAI47_09190 0.46 -3.6
1,936,590 + IAI47_09190 0.53 -1.3
1,936,591 - IAI47_09190 0.53 -4.3
1,936,781 + IAI47_09190 0.65 -3.7
1,936,782 - IAI47_09190 0.65 -3.8
1,936,782 - IAI47_09190 0.65 -2.1
1,936,782 - IAI47_09190 0.65 -1.8
1,936,798 - IAI47_09190 0.66 -3.7
1,936,798 - IAI47_09190 0.66 -3.8
1,936,807 - IAI47_09190 0.67 -3.2
1,936,828 + IAI47_09190 0.68 -2.3
1,936,828 + IAI47_09190 0.68 -2.3
1,936,828 + IAI47_09190 0.68 -3.6
1,936,829 - IAI47_09190 0.68 -0.8
1,936,829 - IAI47_09190 0.68 -3.1
1,936,869 + IAI47_09190 0.71 -2.6
1,936,869 + IAI47_09190 0.71 -2.3
1,936,870 - IAI47_09190 0.71 -3.2
1,936,870 - IAI47_09190 0.71 -1.8
1,936,870 - IAI47_09190 0.71 -0.8
1,936,870 - IAI47_09190 0.71 -3.9
1,936,921 + IAI47_09190 0.74 -2.6
1,936,921 + IAI47_09190 0.74 -2.8
1,936,936 + IAI47_09190 0.75 -1.8
1,936,937 - IAI47_09190 0.75 -0.8
1,936,937 - IAI47_09190 0.75 -1.8
1,936,937 - IAI47_09190 0.75 -2.3
1,936,937 - IAI47_09190 0.75 -3.3
1,936,969 + IAI47_09190 0.77 -3.8
1,937,128 + IAI47_09190 0.87 -1.3
1,937,128 + IAI47_09190 0.87 -2.1
1,937,129 - IAI47_09190 0.87 -2.8
1,937,129 - IAI47_09190 0.87 -1.8
1,937,308 + -3.2
1,937,309 - -2.8
1,937,309 - -2.1
1,937,381 + -3.1
1,937,382 - +0.8
1,937,382 - +0.8
1,937,384 + -2.1
1,937,384 + -2.9
1,937,384 + -1.8
1,937,384 + -1.3
1,937,384 + -2.6
1,937,385 - +0.0
1,937,385 - -0.6
1,937,385 - +0.2
1,937,385 - -1.1
1,937,385 - -2.1
1,937,397 - -0.4
1,937,427 - -0.3
1,937,452 + -1.8
1,937,464 + -3.1
1,937,464 + -3.7
1,937,464 + -2.8
1,937,465 - -1.0
1,937,465 - -0.2
1,937,484 - -0.8
1,937,491 - +1.1
1,937,560 - -1.1
1,937,585 + +0.7
1,937,585 + -0.2
1,937,588 + +0.2
1,937,588 + +0.2
1,937,588 + +0.7
1,937,591 + +0.2
1,937,591 + +0.6
1,937,592 - -0.1
1,937,592 - -0.2
1,937,592 - +0.4
1,937,639 + +0.8
1,937,640 - -0.5
1,937,640 - -0.4
1,937,702 + IAI47_09195 0.14 +0.6
1,937,702 + IAI47_09195 0.14 -1.3
1,937,703 - IAI47_09195 0.14 +1.2
1,937,703 - IAI47_09195 0.14 -0.8
1,937,721 - IAI47_09195 0.16 -1.1
1,937,756 + IAI47_09195 0.20 +1.2
1,937,756 + IAI47_09195 0.20 -1.6
1,937,756 + IAI47_09195 0.20 +0.8
1,937,792 + IAI47_09195 0.24 -0.6
1,937,793 - IAI47_09195 0.24 +0.2
1,938,022 - IAI47_09195 0.49 +0.7
1,938,138 + IAI47_09195 0.62 +1.1
1,938,153 + IAI47_09195 0.63 -0.5
1,938,154 - IAI47_09195 0.63 -1.1
1,938,154 - IAI47_09195 0.63 +0.2
1,938,154 - IAI47_09195 0.63 +1.0
1,938,303 + IAI47_09195 0.80 -0.1
1,938,303 + IAI47_09195 0.80 -0.8
1,938,303 + IAI47_09195 0.80 -1.9
1,938,303 + IAI47_09195 0.80 -0.3
1,938,303 + IAI47_09195 0.80 -0.7
1,938,303 + IAI47_09195 0.80 -0.9
1,938,303 + IAI47_09195 0.80 +1.6
1,938,304 - IAI47_09195 0.80 -0.2
1,938,304 - IAI47_09195 0.80 -2.1
1,938,304 - IAI47_09195 0.80 +0.4
1,938,304 - IAI47_09195 0.80 -0.1
1,938,304 - IAI47_09195 0.80 -1.3
1,938,304 - IAI47_09195 0.80 -0.3

Or see this region's nucleotide sequence