Strain Fitness in Pantoea sp. MT58 around IAI47_08445

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
1,787,078	+		IAI47_08435	0.67	+0.2
1,787,078	+		IAI47_08435	0.67	-0.5
1,787,078	+		IAI47_08435	0.67	-1.8
1,787,078	+		IAI47_08435	0.67	+0.6
1,787,078	+		IAI47_08435	0.67	-0.9
1,787,282	+				-0.5
1,787,282	+				-0.8
1,787,359	+				+1.2
1,787,359	+				+1.8
1,787,359	+				+1.2
1,787,359	+				+1.2
1,787,359	+				-0.2
1,787,359	+				+0.8
1,787,414	+		IAI47_08440	0.10	-2.6
1,787,415	-		IAI47_08440	0.10	-1.9
1,787,443	-		IAI47_08440	0.16	-1.4
1,787,471	+		IAI47_08440	0.21	-3.1
1,787,506	-		IAI47_08440	0.27	-1.4
1,787,893	+				-0.1
1,787,893	+				-0.2
1,787,893	+				-1.0
1,787,894	-				-0.8
1,787,923	-				+0.7
1,787,940	+				-0.8
1,787,945	+				-0.9
1,787,945	+				-0.1
1,787,948	-				+0.2
1,787,948	-				-1.8
1,787,966	+				+0.1
1,787,966	+				+1.2
1,787,966	+				-0.2
1,787,970	+				-1.0
1,787,970	+				+0.1
1,787,970	+				+0.2
1,787,970	+				-0.4
1,787,989	+				+0.2
1,787,989	+				-1.4
1,787,989	+				+0.2
1,787,989	+				+0.2
1,787,989	+				-1.4
1,788,008	+				-2.4
1,788,070	-		IAI47_08445	0.14	+0.2
1,788,422	+		IAI47_08445	0.71	-1.4
1,788,524	+		IAI47_08445	0.88	-2.8
1,788,643	+				-1.0
1,788,662	-				-1.4
1,788,662	-				-1.8
1,788,808	+		IAI47_08450	0.20	+1.2
1,788,981	+		IAI47_08450	0.37	-1.1
1,788,982	-		IAI47_08450	0.37	-0.8
1,788,987	-		IAI47_08450	0.38	-1.8
1,789,073	-		IAI47_08450	0.46	-1.6
1,789,158	-		IAI47_08450	0.55	-2.8
1,789,166	-		IAI47_08450	0.56	-0.8
1,789,180	+		IAI47_08450	0.57	+0.2
1,789,236	+		IAI47_08450	0.62	-1.2
1,789,236	+		IAI47_08450	0.62	-1.4
1,789,369	+		IAI47_08450	0.76	-1.1
1,789,394	+		IAI47_08450	0.78	-1.4
1,789,394	+		IAI47_08450	0.78	-2.1
1,789,394	+		IAI47_08450	0.78	-0.4
1,789,396	+		IAI47_08450	0.78	-2.1
1,789,405	+		IAI47_08450	0.79	-1.8
1,789,594	+				+0.5
1,789,595	-				+0.2