Strain Fitness in Pantoea sp. MT58 around IAI47_06730

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
1,401,282	+		IAI47_06725	0.28	-0.5
1,401,282	+		IAI47_06725	0.28	+0.3
1,401,283	-		IAI47_06725	0.29	-0.4
1,401,351	-		IAI47_06725	0.34	+2.6
1,401,366	+		IAI47_06725	0.36	-0.7
1,401,425	+		IAI47_06725	0.41	-0.5
1,401,425	+		IAI47_06725	0.41	-0.9
1,401,426	-		IAI47_06725	0.41	+0.7
1,401,426	-		IAI47_06725	0.41	-0.3
1,401,459	+		IAI47_06725	0.44	+0.5
1,401,459	+		IAI47_06725	0.44	+0.3
1,401,459	+		IAI47_06725	0.44	+0.7
1,401,460	-		IAI47_06725	0.44	-1.0
1,401,499	+		IAI47_06725	0.47	+1.2
1,401,552	+		IAI47_06725	0.52	+0.1
1,401,553	-		IAI47_06725	0.52	-0.7
1,401,639	+		IAI47_06725	0.59	+0.5
1,401,640	-		IAI47_06725	0.59	-0.4
1,401,640	-		IAI47_06725	0.59	+0.4
1,401,665	-		IAI47_06725	0.61	-0.5
1,401,715	+		IAI47_06725	0.66	-0.5
1,401,715	+		IAI47_06725	0.66	-2.7
1,401,716	-		IAI47_06725	0.66	-0.8
1,401,782	+		IAI47_06725	0.71	-0.4
1,401,782	+		IAI47_06725	0.71	+1.9
1,401,782	+		IAI47_06725	0.71	-0.9
1,401,782	+		IAI47_06725	0.71	-1.7
1,401,782	+		IAI47_06725	0.71	-1.0
1,401,783	-		IAI47_06725	0.72	-0.7
1,401,813	+		IAI47_06725	0.74	-1.7
1,401,814	-		IAI47_06725	0.74	+0.1
1,401,846	+		IAI47_06725	0.77	+1.1
1,401,846	+		IAI47_06725	0.77	-0.5
1,401,847	-		IAI47_06725	0.77	-0.7
1,401,847	-		IAI47_06725	0.77	-0.7
1,401,885	+		IAI47_06725	0.80	-0.8
1,401,885	+		IAI47_06725	0.80	-0.4
1,401,885	+		IAI47_06725	0.80	+1.3
1,401,885	+		IAI47_06725	0.80	-0.3
1,401,885	+		IAI47_06725	0.80	+0.1
1,401,885	+		IAI47_06725	0.80	-0.3
1,401,886	-		IAI47_06725	0.80	-1.3
1,401,886	-		IAI47_06725	0.80	-0.7
1,401,886	-		IAI47_06725	0.80	+0.1
1,401,911	+		IAI47_06725	0.83	+1.9
1,401,911	+		IAI47_06725	0.83	+0.6
1,401,911	+		IAI47_06725	0.83	+0.6
1,401,911	+		IAI47_06725	0.83	+0.4
1,401,911	+		IAI47_06725	0.83	-1.3
1,401,911	+		IAI47_06725	0.83	-1.0
1,401,911	+		IAI47_06725	0.83	-0.4
1,401,912	-		IAI47_06725	0.83	+0.5
1,401,922	-		IAI47_06725	0.84	+1.5
1,401,936	+		IAI47_06725	0.85	-0.3
1,401,936	+		IAI47_06725	0.85	-0.7
1,401,936	+		IAI47_06725	0.85	-0.1
1,401,936	+		IAI47_06725	0.85	-0.7
1,401,936	+		IAI47_06725	0.85	+1.1
1,401,936	+		IAI47_06725	0.85	-0.3
1,401,937	-		IAI47_06725	0.85	-0.3
1,401,937	-		IAI47_06725	0.85	+0.3
1,401,937	-		IAI47_06725	0.85	+0.1
1,401,937	-		IAI47_06725	0.85	+1.8
1,401,937	-		IAI47_06725	0.85	+0.1
1,401,937	-		IAI47_06725	0.85	-0.7
1,401,937	-		IAI47_06725	0.85	-0.0
1,401,938	+		IAI47_06725	0.85	+0.0
1,401,938	+		IAI47_06725	0.85	+1.3
1,401,938	+		IAI47_06725	0.85	-0.2
1,401,938	+		IAI47_06725	0.85	-0.5
1,401,938	+		IAI47_06725	0.85	+0.9
1,401,939	-		IAI47_06725	0.85	+0.9
1,401,939	-		IAI47_06725	0.85	-0.3
1,401,939	-		IAI47_06725	0.85	+0.3
1,401,939	-		IAI47_06725	0.85	+0.7
1,401,995	+		IAI47_06725	0.90	-0.1
1,401,995	+		IAI47_06725	0.90	-0.3
1,401,995	+		IAI47_06725	0.90	-0.0
1,401,996	-		IAI47_06725	0.90	-0.5
1,402,018	+				+0.3
1,402,018	+				-0.7
1,402,018	+				+0.3
1,402,064	+				-0.5
1,402,110	+				-1.5
1,402,142	+				-2.0
1,402,142	+				-0.7
1,402,204	+				+0.7
1,402,205	-				-2.5
1,402,205	-				-1.5
1,402,263	+				-1.1
1,402,263	+				-0.6
1,402,264	-				+1.3
1,402,264	-				-0.3
1,402,267	+				+0.2
1,402,267	+				-0.2
1,402,267	+				-0.3
1,402,267	+				-0.7
1,402,267	+				-1.3
1,402,268	-				-1.3
1,402,268	-				-1.0
1,402,268	-				+0.3
1,402,268	-				-1.1
1,402,325	-				-1.0
1,402,368	+		IAI47_06730	0.10	+0.3
1,402,368	+		IAI47_06730	0.10	-1.7
1,402,368	+		IAI47_06730	0.10	+0.3
1,402,369	-		IAI47_06730	0.11	-1.5
1,402,400	-		IAI47_06730	0.14	-2.0
1,402,493	-		IAI47_06730	0.22	-1.4
1,402,505	-		IAI47_06730	0.24	-1.1
1,402,536	+		IAI47_06730	0.27	+0.3
1,402,537	-		IAI47_06730	0.27	+1.3
1,402,537	-		IAI47_06730	0.27	+0.3
1,402,537	-		IAI47_06730	0.27	-0.9
1,402,660	+		IAI47_06730	0.39	+1.3
1,402,660	+		IAI47_06730	0.39	-0.1
1,402,661	-		IAI47_06730	0.39	-1.8
1,402,661	-		IAI47_06730	0.39	-1.1
1,402,661	-		IAI47_06730	0.39	-1.3
1,402,671	+		IAI47_06730	0.40	-0.7
1,402,671	+		IAI47_06730	0.40	-1.6
1,402,683	+		IAI47_06730	0.41	+0.6
1,402,683	+		IAI47_06730	0.41	-0.8
1,402,683	+		IAI47_06730	0.41	-2.3
1,402,683	+		IAI47_06730	0.41	-0.7
1,402,683	+		IAI47_06730	0.41	-0.2
1,402,684	-		IAI47_06730	0.41	+1.3
1,402,684	-		IAI47_06730	0.41	-0.9
1,402,684	-		IAI47_06730	0.41	-2.5
1,402,697	-		IAI47_06730	0.42	-2.5
1,402,697	-		IAI47_06730	0.42	-1.7
1,402,773	+		IAI47_06730	0.49	-0.5
1,402,773	+		IAI47_06730	0.49	+0.3
1,402,774	-		IAI47_06730	0.49	+0.1
1,402,900	-		IAI47_06730	0.62	-0.7
1,402,988	+		IAI47_06730	0.70	-1.1
1,402,988	+		IAI47_06730	0.70	-1.0
1,402,989	-		IAI47_06730	0.70	-1.3
1,403,081	-		IAI47_06730	0.79	-1.1
1,403,096	+		IAI47_06730	0.80	-0.7
1,403,136	+		IAI47_06730	0.84	-2.3
1,403,140	+		IAI47_06730	0.85	-1.1
1,403,141	-		IAI47_06730	0.85	-1.0
1,403,209	+				+0.3
1,403,209	+				-1.1
1,403,209	+				-1.7
1,403,209	+				-1.7
1,403,210	-				-0.4
1,403,210	-				+0.1
1,403,210	-				-0.2
1,403,210	-				+2.4
1,403,215	+				-1.7
1,403,215	+				-0.9
1,403,215	+				+0.6
1,403,215	+				-1.7
1,403,216	-				-0.0
1,403,276	-				-0.9
1,403,330	+				-0.4
1,403,331	-				+0.0
1,403,334	+				-0.1
1,403,349	+				-0.8
1,403,349	+				+0.1
1,403,350	-				-0.4
1,403,365	+				-1.5
1,403,381	+				+0.9
1,403,381	+				-0.7
1,403,381	+				-0.1
1,403,382	-				+0.7
1,403,382	-				+1.0
1,403,385	+				+0.3
1,403,385	+				-0.3
1,403,386	-				-0.7
1,403,386	-				+1.2
1,403,430	+				+1.5
1,403,430	+				-1.0
1,403,430	+				-0.5
1,403,431	-				+0.5
1,403,431	-				+0.3
1,403,431	-				-0.5
1,403,431	-				+1.0
1,403,431	-				+1.1
1,403,489	+				+0.1
1,403,489	+				-0.0
1,403,489	+				+0.0
1,403,490	-				-1.0
1,403,490	-				+0.3
1,403,513	+				+0.9
1,403,513	+				-0.0
1,403,513	+				-0.6
1,403,514	-				-0.0
1,403,514	-				-1.8
1,403,514	-				+0.8
1,403,514	-				+0.3
1,403,540	+				+0.1
1,403,541	-				+0.3
1,403,590	+				+1.3
1,403,590	+				+0.0
1,403,591	-				+0.6
1,403,591	-				+0.6
1,403,591	-				-0.3
1,403,593	+				-0.0
1,403,594	-				+0.1
1,403,606	-				-0.7
1,403,606	-				+0.6
1,403,606	-				+1.0
1,403,606	-				+0.3
1,403,614	+				+1.9
1,403,614	+				+1.3
1,403,614	+				+0.3
1,403,614	+				-0.6
1,403,614	+				+0.5
1,403,615	-				-0.6
1,403,615	-				+0.5
1,403,615	-				-1.6
1,403,615	-				-0.3
1,403,615	-				+0.7
1,403,615	-				-0.9
1,403,615	-				+0.3
1,403,615	-				-1.3
1,403,632	+				-0.3
1,403,632	+				-0.4
1,403,633	-				-0.3
1,403,633	-				+0.5
1,403,633	-				-0.9
1,403,706	-				-0.4
1,403,706	-				+0.1
1,403,712	-		IAI47_06735	0.10	+0.1
1,403,712	-		IAI47_06735	0.10	+0.9
1,403,740	+		IAI47_06735	0.13	-0.9
1,403,740	+		IAI47_06735	0.13	+1.5
1,403,741	-		IAI47_06735	0.13	-0.8
1,403,778	+		IAI47_06735	0.17	+1.2
1,403,778	+		IAI47_06735	0.17	+0.3
1,403,779	-		IAI47_06735	0.17	+0.0
1,403,923	+		IAI47_06735	0.32	+0.5
1,403,924	-		IAI47_06735	0.32	-0.9
1,403,993	+		IAI47_06735	0.39	+1.1
1,403,993	+		IAI47_06735	0.39	+0.8
1,403,993	+		IAI47_06735	0.39	-0.3
1,403,993	+		IAI47_06735	0.39	+0.1
1,403,993	+		IAI47_06735	0.39	+2.6
1,403,994	-		IAI47_06735	0.39	+0.3
1,403,994	-		IAI47_06735	0.39	-0.2
1,403,994	-		IAI47_06735	0.39	+0.1
1,403,996	+		IAI47_06735	0.39	-0.8
1,403,996	+		IAI47_06735	0.39	-0.1
1,403,996	+		IAI47_06735	0.39	-0.0
1,403,996	+		IAI47_06735	0.39	-0.0
1,403,997	-		IAI47_06735	0.39	-0.4
1,403,997	-		IAI47_06735	0.39	-0.2
1,404,013	+		IAI47_06735	0.41	-0.5
1,404,013	+		IAI47_06735	0.41	-1.8
1,404,014	-		IAI47_06735	0.41	+0.1
1,404,014	-		IAI47_06735	0.41	-0.5
1,404,014	-		IAI47_06735	0.41	-0.7
1,404,014	-		IAI47_06735	0.41	+1.0
1,404,158	+		IAI47_06735	0.55	+0.3
1,404,158	+		IAI47_06735	0.55	-0.3
1,404,158	+		IAI47_06735	0.55	-0.4
1,404,158	+		IAI47_06735	0.55	-0.0
1,404,158	+		IAI47_06735	0.55	+0.1
1,404,158	+		IAI47_06735	0.55	-0.3
1,404,159	-		IAI47_06735	0.55	-0.2
1,404,159	-		IAI47_06735	0.55	+1.3
1,404,204	+		IAI47_06735	0.60	+0.8
1,404,215	-		IAI47_06735	0.61	-0.2
1,404,230	-		IAI47_06735	0.62	+0.2
1,404,247	+		IAI47_06735	0.64	+0.3
1,404,247	+		IAI47_06735	0.64	+1.3
1,404,247	+		IAI47_06735	0.64	+0.5
1,404,247	+		IAI47_06735	0.64	+0.1
1,404,248	-		IAI47_06735	0.64	+0.6
1,404,248	-		IAI47_06735	0.64	-0.3