Strain Fitness in Pantoea sp. MT58 around IAI47_06135

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
1,248,085	+		IAI47_06130	0.64	-0.9
1,248,085	+		IAI47_06130	0.64	+0.3
1,248,086	-		IAI47_06130	0.64	+2.9
1,248,086	-		IAI47_06130	0.64	+0.1
1,248,226	+		IAI47_06130	0.70	+0.3
1,248,226	+		IAI47_06130	0.70	-0.2
1,248,226	+		IAI47_06130	0.70	+0.3
1,248,227	-		IAI47_06130	0.70	+0.1
1,248,227	-		IAI47_06130	0.70	-0.4
1,248,227	-		IAI47_06130	0.70	-0.0
1,248,227	-		IAI47_06130	0.70	-0.7
1,248,227	-		IAI47_06130	0.70	+0.0
1,248,250	+		IAI47_06130	0.72	-0.7
1,248,250	+		IAI47_06130	0.72	-0.4
1,248,250	+		IAI47_06130	0.72	-0.1
1,248,250	+		IAI47_06130	0.72	-0.7
1,248,250	+		IAI47_06130	0.72	+0.6
1,248,250	+		IAI47_06130	0.72	-0.5
1,248,250	+		IAI47_06130	0.72	+0.8
1,248,250	+		IAI47_06130	0.72	+0.3
1,248,250	+		IAI47_06130	0.72	+1.3
1,248,250	+		IAI47_06130	0.72	-1.8
1,248,251	-		IAI47_06130	0.72	+1.1
1,248,251	-		IAI47_06130	0.72	+0.3
1,248,251	-		IAI47_06130	0.72	+0.3
1,248,251	-		IAI47_06130	0.72	-0.1
1,248,251	-		IAI47_06130	0.72	+1.3
1,248,251	-		IAI47_06130	0.72	+0.9
1,248,251	-		IAI47_06130	0.72	+0.3
1,248,251	-		IAI47_06130	0.72	-0.7
1,248,251	-		IAI47_06130	0.72	+0.9
1,248,252	+		IAI47_06130	0.72	+0.5
1,248,252	+		IAI47_06130	0.72	+0.3
1,248,252	+		IAI47_06130	0.72	-0.2
1,248,252	+		IAI47_06130	0.72	-1.4
1,248,252	+		IAI47_06130	0.72	-0.2
1,248,252	+		IAI47_06130	0.72	+0.1
1,248,252	+		IAI47_06130	0.72	+0.9
1,248,253	-		IAI47_06130	0.72	+1.3
1,248,253	-		IAI47_06130	0.72	-0.3
1,248,253	-		IAI47_06130	0.72	+0.5
1,248,253	-		IAI47_06130	0.72	+1.0
1,248,253	-		IAI47_06130	0.72	-0.9
1,248,254	+		IAI47_06130	0.72	-1.3
1,248,254	+		IAI47_06130	0.72	+2.4
1,248,254	+		IAI47_06130	0.72	-1.0
1,248,254	+		IAI47_06130	0.72	-2.1
1,248,254	+		IAI47_06130	0.72	-0.1
1,248,254	+		IAI47_06130	0.72	+0.2
1,248,254	+		IAI47_06130	0.72	+1.9
1,248,254	+		IAI47_06130	0.72	+1.3
1,248,254	+		IAI47_06130	0.72	+0.8
1,248,254	+		IAI47_06130	0.72	+0.1
1,248,254	+		IAI47_06130	0.72	-0.8
1,248,254	+		IAI47_06130	0.72	+0.3
1,248,255	-		IAI47_06130	0.72	+1.3
1,248,255	-		IAI47_06130	0.72	-3.0
1,248,255	-		IAI47_06130	0.72	-1.0
1,248,255	-		IAI47_06130	0.72	+0.0
1,248,255	-		IAI47_06130	0.72	-0.5
1,248,255	-		IAI47_06130	0.72	-1.3
1,248,255	-		IAI47_06130	0.72	+0.3
1,248,255	-		IAI47_06130	0.72	+0.5
1,248,255	-		IAI47_06130	0.72	+1.3
1,248,300	+		IAI47_06130	0.74	+0.3
1,248,300	+		IAI47_06130	0.74	-0.1
1,248,301	-		IAI47_06130	0.74	-0.7
1,248,301	-		IAI47_06130	0.74	-0.1
1,248,301	-		IAI47_06130	0.74	-0.3
1,248,381	+		IAI47_06130	0.78	-0.4
1,248,382	-		IAI47_06130	0.78	-0.5
1,248,409	+		IAI47_06130	0.79	-1.1
1,248,410	-		IAI47_06130	0.79	+0.1
1,248,410	-		IAI47_06130	0.79	-0.3
1,248,410	-		IAI47_06130	0.79	-1.0
1,248,410	-		IAI47_06130	0.79	+0.5
1,248,493	+		IAI47_06130	0.83	+0.1
1,248,493	+		IAI47_06130	0.83	-0.3
1,248,494	-		IAI47_06130	0.83	+0.7
1,248,494	-		IAI47_06130	0.83	-0.3
1,248,499	+		IAI47_06130	0.83	+1.0
1,248,499	+		IAI47_06130	0.83	-0.0
1,248,500	-		IAI47_06130	0.83	-0.6
1,248,544	+		IAI47_06130	0.86	+0.1
1,248,545	-		IAI47_06130	0.86	-0.8
1,248,545	-		IAI47_06130	0.86	+0.3
1,248,546	+		IAI47_06130	0.86	-0.9
1,248,546	+		IAI47_06130	0.86	-0.4
1,248,547	-		IAI47_06130	0.86	+0.3
1,248,547	-		IAI47_06130	0.86	+2.6
1,248,547	-		IAI47_06130	0.86	-1.1
1,248,547	-		IAI47_06130	0.86	-0.0
1,248,547	-		IAI47_06130	0.86	+0.9
1,248,733	+				+0.4
1,248,733	+				-1.7
1,248,733	+				+0.6
1,248,733	+				+0.9
1,248,733	+				-0.7
1,248,733	+				-1.4
1,248,733	+				-0.7
1,248,734	-				-0.8
1,248,734	-				+0.3
1,248,734	-				-0.1
1,248,734	-				+1.5
1,248,734	-				+0.3
1,248,734	-				+1.3
1,248,774	-				-0.7
1,248,774	-				+0.4
1,248,783	+				+1.6
1,248,807	+				+0.8
1,248,807	+				-1.9
1,248,807	+				-1.1
1,248,807	+				+1.3
1,248,808	-				+0.3
1,248,808	-				+0.4
1,248,900	+				-1.0
1,248,901	-				-1.5
1,248,901	-				-1.7
1,248,950	+				-0.1
1,248,950	+				+0.9
1,248,951	-				+0.3
1,248,951	-				-1.0
1,248,951	-				+0.5
1,248,973	+				-1.8
1,248,973	+				-0.5
1,248,973	+				-0.5
1,248,973	+				+0.3
1,248,973	+				-0.7
1,248,973	+				-0.7
1,248,974	-				-0.7
1,248,974	-				-1.4
1,248,974	-				-1.7
1,248,974	-				-2.7
1,248,974	-				-0.9
1,248,975	+				-1.3
1,248,975	+				-1.1
1,248,975	+				-1.7
1,248,975	+				-2.3
1,248,975	+				-0.3
1,248,975	+				+0.3
1,248,987	+				-1.3
1,248,992	+				-0.7
1,248,992	+				+0.3
1,248,992	+				-0.0
1,248,992	+				-0.7
1,249,144	+		IAI47_06135	0.15	-1.3
1,249,144	+		IAI47_06135	0.15	-1.3
1,249,144	+		IAI47_06135	0.15	-0.7
1,249,145	-		IAI47_06135	0.15	-1.7
1,249,145	-		IAI47_06135	0.15	-1.7
1,249,213	+		IAI47_06135	0.29	-2.3
1,249,213	+		IAI47_06135	0.29	-0.7
1,249,228	-		IAI47_06135	0.33	-3.8
1,249,333	+		IAI47_06135	0.54	-1.7
1,249,341	+		IAI47_06135	0.56	-3.4
1,249,341	+		IAI47_06135	0.56	-2.5
1,249,414	+		IAI47_06135	0.71	-2.3
1,249,414	+		IAI47_06135	0.71	-1.9
1,249,414	+		IAI47_06135	0.71	-2.3
1,249,505	+				-2.5
1,249,584	+				-0.4
1,249,584	+				+0.1
1,249,584	+				+1.1
1,249,584	+				+1.2
1,249,726	+		IAI47_06140	0.26	-0.9
1,249,726	+		IAI47_06140	0.26	-0.4
1,249,726	+		IAI47_06140	0.26	+0.3
1,249,727	-		IAI47_06140	0.26	-1.3
1,249,727	-		IAI47_06140	0.26	-0.6
1,249,811	-		IAI47_06140	0.42	-0.3
1,249,811	-		IAI47_06140	0.42	-0.0
1,249,811	-		IAI47_06140	0.42	+0.9
1,249,811	-		IAI47_06140	0.42	-0.7
1,249,858	+		IAI47_06140	0.50	+0.7
1,249,858	+		IAI47_06140	0.50	+0.2
1,249,858	+		IAI47_06140	0.50	-0.6
1,249,858	+		IAI47_06140	0.50	+1.3
1,249,858	+		IAI47_06140	0.50	+0.3
1,249,858	+		IAI47_06140	0.50	+0.1
1,249,859	-		IAI47_06140	0.50	-0.5
1,249,859	-		IAI47_06140	0.50	-0.0
1,249,860	+		IAI47_06140	0.50	-0.0
1,249,860	+		IAI47_06140	0.50	-0.5
1,249,860	+		IAI47_06140	0.50	-0.1
1,249,861	-		IAI47_06140	0.51	+1.6
1,249,861	-		IAI47_06140	0.51	+1.1
1,249,933	+		IAI47_06140	0.64	+1.9
1,249,934	-		IAI47_06140	0.64	+1.3
1,249,934	-		IAI47_06140	0.64	-0.2
1,249,965	+		IAI47_06140	0.70	+0.0
1,249,966	-		IAI47_06140	0.70	-1.0
1,249,966	-		IAI47_06140	0.70	-1.3
1,249,966	-		IAI47_06140	0.70	-1.5
1,250,003	+		IAI47_06140	0.77	-0.4
1,250,035	+		IAI47_06140	0.82	+0.2
1,250,035	+		IAI47_06140	0.82	-1.9
1,250,036	-		IAI47_06140	0.83	+0.3
1,250,078	+				-0.3
1,250,078	+				+1.7
1,250,078	+				-0.1
1,250,079	-				+0.1
1,250,079	-				-1.0
1,250,079	-				-1.0
1,250,079	-				-0.4
1,250,111	+				-0.4
1,250,111	+				-0.9
1,250,112	-				-0.1
1,250,112	-				-1.4
1,250,112	-				-0.5
1,250,112	-				-0.2
1,250,112	-				-0.3
1,250,112	-				+0.3
1,250,112	-				+0.9
1,250,112	-				-0.1
1,250,178	-				-1.1
1,250,178	-				+1.3
1,250,178	-				+0.3
1,250,183	-				+0.3
1,250,188	+				+0.8
1,250,198	+				+0.4
1,250,198	+				+0.6
1,250,198	+				+0.6
1,250,198	+				-1.3
1,250,198	+				+2.9
1,250,199	-				-1.5
1,250,199	-				-0.1
1,250,199	-				-0.7
1,250,254	+				+2.9
1,250,254	+				-1.5
1,250,254	+				-0.2
1,250,266	+				+0.3
1,250,266	+				+0.6
1,250,266	+				-0.4
1,250,401	+		IAI47_06145	0.12	-0.3
1,250,401	+		IAI47_06145	0.12	+1.3
1,250,464	+		IAI47_06145	0.19	+0.9
1,250,476	+		IAI47_06145	0.20	-2.9
1,250,476	+		IAI47_06145	0.20	+0.6
1,250,476	+		IAI47_06145	0.20	-0.7