Strain Fitness in Pantoea sp. MT58 around IAI47_05440

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
1,149,409	+				+0.4
1,149,511	+				+0.3
1,149,512	-				+1.1
1,149,512	-				+1.3
1,149,529	-				+0.0
1,149,535	-				-1.5
1,149,542	-				-1.1
1,149,565	+				-1.3
1,149,566	-				-1.3
1,149,592	+				+0.3
1,149,592	+				-2.3
1,149,592	+				+0.2
1,149,593	-				-2.0
1,149,593	-				+0.4
1,149,597	+				+1.9
1,149,608	+				+1.3
1,149,691	+				+2.3
1,149,691	+				+1.3
1,149,692	-				+0.9
1,149,692	-				+0.6
1,149,923	+				+0.3
1,149,924	-				-0.2
1,149,930	-				-0.7
1,149,950	+				+1.3
1,149,951	-				-0.1
1,149,965	-				-0.7
1,149,965	-				+0.3
1,149,987	+				+2.7
1,149,988	-				-0.3
1,149,988	-				+0.1
1,149,988	-				-1.1
1,150,022	+				+1.9
1,150,023	-				-0.7
1,150,035	-				-2.7
1,150,036	+				-0.9
1,150,036	+				-2.3
1,150,036	+				-1.4
1,150,036	+				-0.3
1,150,037	-				+0.3
1,150,037	-				+0.5
1,150,037	-				+1.9
1,150,037	-				+0.5
1,150,037	-				-0.5
1,150,037	-				+0.0
1,150,037	-				-0.5
1,150,037	-				-1.1
1,150,074	+				+0.7
1,150,117	+		IAI47_05435	0.23	+1.6
1,150,117	+		IAI47_05435	0.23	-0.9
1,150,118	-		IAI47_05435	0.24	-1.1
1,150,122	-		IAI47_05435	0.25	-2.3
1,150,122	-		IAI47_05435	0.25	+1.9
1,150,122	-		IAI47_05435	0.25	+1.6
1,150,122	-		IAI47_05435	0.25	-0.5
1,150,122	-		IAI47_05435	0.25	+1.3
1,150,152	+		IAI47_05435	0.35	+1.9
1,150,153	-		IAI47_05435	0.35	-0.5
1,150,206	+		IAI47_05435	0.52	-0.8
1,150,207	-		IAI47_05435	0.52	+0.3
1,150,323	+		IAI47_05435	0.89	-0.1
1,150,324	-		IAI47_05435	0.89	-1.3
1,150,337	-				-1.5
1,150,387	+				+0.3
1,150,421	+				+0.3
1,150,421	+				-1.7
1,150,421	+				-3.6
1,150,421	+				-4.7
1,150,421	+				-1.3
1,150,421	+				-3.3
1,150,518	-		IAI47_05440	0.19	-1.8
1,150,523	+		IAI47_05440	0.19	-2.5
1,150,523	+		IAI47_05440	0.19	-1.3
1,150,523	+		IAI47_05440	0.19	-0.7
1,150,523	+		IAI47_05440	0.19	+1.3
1,150,524	-		IAI47_05440	0.20	-2.8
1,150,524	-		IAI47_05440	0.20	-4.4
1,150,524	-		IAI47_05440	0.20	-4.5
1,150,563	+		IAI47_05440	0.24	-0.7
1,150,602	-		IAI47_05440	0.28	-2.3
1,150,602	-		IAI47_05440	0.28	-1.3
1,150,616	+		IAI47_05440	0.29	-2.7
1,150,708	-		IAI47_05440	0.38	-1.3
1,150,739	+		IAI47_05440	0.42	-3.3
1,150,739	+		IAI47_05440	0.42	-2.8
1,150,739	+		IAI47_05440	0.42	-3.4
1,150,739	+		IAI47_05440	0.42	-2.0
1,150,739	+		IAI47_05440	0.42	-3.4
1,150,740	-		IAI47_05440	0.42	-3.3
1,150,740	-		IAI47_05440	0.42	-3.0
1,150,741	+		IAI47_05440	0.42	-2.0
1,150,742	-		IAI47_05440	0.42	-1.7
1,150,742	-		IAI47_05440	0.42	-5.0
1,150,742	-		IAI47_05440	0.42	-3.1
1,150,742	-		IAI47_05440	0.42	-3.9
1,150,742	-		IAI47_05440	0.42	-2.5
1,150,742	-		IAI47_05440	0.42	-3.0
1,150,742	-		IAI47_05440	0.42	+0.3
1,150,763	+		IAI47_05440	0.44	-0.7
1,150,787	+		IAI47_05440	0.47	-3.4
1,150,892	-		IAI47_05440	0.57	-2.8
1,150,892	-		IAI47_05440	0.57	-1.3
1,150,892	-		IAI47_05440	0.57	-2.8
1,150,892	-		IAI47_05440	0.57	-1.7
1,150,952	+		IAI47_05440	0.64	-3.7
1,150,953	-		IAI47_05440	0.64	-3.9
1,150,953	-		IAI47_05440	0.64	-1.3
1,150,953	-		IAI47_05440	0.64	-2.8
1,150,976	+		IAI47_05440	0.66	-2.8
1,150,976	+		IAI47_05440	0.66	-4.1
1,150,977	-		IAI47_05440	0.66	-3.1
1,151,000	+		IAI47_05440	0.69	-1.3
1,151,001	-		IAI47_05440	0.69	-2.0
1,151,040	+		IAI47_05440	0.73	-3.0
1,151,041	-		IAI47_05440	0.73	-3.0
1,151,068	+		IAI47_05440	0.76	-1.3
1,151,068	+		IAI47_05440	0.76	-2.5
1,151,068	+		IAI47_05440	0.76	-2.0
1,151,068	+		IAI47_05440	0.76	-3.3
1,151,068	+		IAI47_05440	0.76	-2.7
1,151,068	+		IAI47_05440	0.76	-3.8
1,151,069	-		IAI47_05440	0.76	-2.0
1,151,069	-		IAI47_05440	0.76	-4.1
1,151,069	-		IAI47_05440	0.76	-1.7
1,151,069	-		IAI47_05440	0.76	-1.3
1,151,069	-		IAI47_05440	0.76	-1.5
1,151,132	+		IAI47_05440	0.82	-2.5
1,151,133	-		IAI47_05440	0.82	-3.4
1,151,159	+		IAI47_05440	0.85	-1.7
1,151,159	+		IAI47_05440	0.85	-1.3
1,151,160	-		IAI47_05440	0.85	-2.3
1,151,160	-		IAI47_05440	0.85	-2.0
1,151,160	-		IAI47_05440	0.85	-2.0
1,151,160	-		IAI47_05440	0.85	-2.3
1,151,181	+		IAI47_05440	0.87	-4.3
1,151,181	+		IAI47_05440	0.87	+0.3
1,151,261	+				-2.7
1,151,261	+				-2.3
1,151,261	+				-2.3
1,151,261	+				-2.3
1,151,262	-				-2.3
1,151,262	-				-2.0
1,151,262	-				-3.3
1,151,262	-				-4.1
1,151,262	-				-4.0
1,151,290	+				-4.1
1,151,290	+				-3.1
1,151,290	+				-2.5
1,151,290	+				-3.4
1,151,290	+				-2.3
1,151,291	-				-3.3
1,151,291	-				-2.7
1,151,291	-				-1.7
1,151,291	-				-1.3
1,151,297	+				-2.8
1,151,297	+				-2.3
1,151,297	+				-2.3
1,151,297	+				-2.3
1,151,297	+				-4.2
1,151,297	+				-0.7
1,151,297	+				+0.3
1,151,298	-				-2.7
1,151,298	-				-2.8
1,151,298	-				-4.1
1,151,303	+				-0.7
1,151,303	+				-2.0
1,151,303	+				-2.7
1,151,304	-				-2.1
1,151,314	+				-3.8
1,151,314	+				-3.0
1,151,314	+				-2.8
1,151,315	-				-0.7
1,151,315	-				+0.3
1,151,315	-				-2.0
1,151,327	+				-3.0
1,151,340	-				+0.1
1,151,347	+				-3.1
1,151,347	+				-0.1
1,151,347	+				-1.3
1,151,347	+				-2.7
1,151,347	+				-2.0
1,151,347	+				-2.5
1,151,347	+				-0.7
1,151,347	+				-1.3
1,151,347	+				-3.0
1,151,347	+				-2.3
1,151,348	-				-2.2
1,151,348	-				-2.0
1,151,348	-				-1.8
1,151,348	-				-1.7
1,151,348	-				-2.8
1,151,348	-				-3.9
1,151,348	-				-1.6
1,151,348	-				-1.7
1,151,348	-				-1.9
1,151,348	-				-3.1
1,151,348	-				-3.3
1,151,348	-				-3.0
1,151,383	+				-3.1
1,151,383	+				+0.3
1,151,383	+				-1.3
1,151,383	+				-3.2
1,151,383	+				-3.6
1,151,383	+				-2.5
1,151,384	-				-1.3
1,151,384	-				+0.3
1,151,384	-				-3.4
1,151,385	+				-3.5
1,151,385	+				-3.6
1,151,385	+				-0.3
1,151,385	+				-3.5
1,151,385	+				-1.5
1,151,386	-				+1.0
1,151,386	-				-3.1
1,151,386	-				-1.3
1,151,389	+				-3.5
1,151,389	+				-1.5
1,151,389	+				-1.5
1,151,389	+				-2.0
1,151,389	+				-2.3
1,151,390	-				-2.5
1,151,390	-				-2.5
1,151,390	-				-2.0
1,151,390	-				-1.5
1,151,390	-				-2.0
1,151,390	-				-0.7
1,151,390	-				-2.7
1,151,390	-				-1.0
1,151,390	-				-1.0
1,151,391	+				-0.3
1,151,392	-				-2.1
1,151,392	-				-2.7
1,151,406	+				+1.1
1,151,407	-				-0.1
1,151,417	-				+1.3
1,151,417	-				+0.1
1,151,427	+				-0.2
1,151,427	+				+0.1
1,151,427	+				+0.3
1,151,428	-				+1.3
1,151,428	-				+0.1
1,151,446	+				-0.8
1,151,526	-		IAI47_05445	0.11	-0.8
1,151,526	-		IAI47_05445	0.11	-1.5
1,151,526	-		IAI47_05445	0.11	+0.0
1,151,526	-		IAI47_05445	0.11	-0.5
1,151,526	-		IAI47_05445	0.11	+4.1
1,151,537	+		IAI47_05445	0.12	+0.3
1,151,537	+		IAI47_05445	0.12	-0.4
1,151,538	-		IAI47_05445	0.12	-0.6
1,151,666	-		IAI47_05445	0.29	+0.3
1,151,677	-		IAI47_05445	0.30	+1.3
1,151,738	+		IAI47_05445	0.38	-1.1
1,151,738	+		IAI47_05445	0.38	+0.0
1,151,738	+		IAI47_05445	0.38	+1.1
1,151,738	+		IAI47_05445	0.38	-0.7
1,151,739	-		IAI47_05445	0.38	+0.9
1,151,743	+		IAI47_05445	0.39	-0.4
1,151,744	-		IAI47_05445	0.39	+0.4
1,151,744	-		IAI47_05445	0.39	-1.4
1,151,744	-		IAI47_05445	0.39	-0.0
1,151,776	+		IAI47_05445	0.43	+0.6
1,151,776	+		IAI47_05445	0.43	-0.6
1,151,777	-		IAI47_05445	0.43	+0.0
1,151,777	-		IAI47_05445	0.43	-1.0
1,151,777	-		IAI47_05445	0.43	+0.9
1,151,779	+		IAI47_05445	0.43	+1.7
1,151,779	+		IAI47_05445	0.43	-0.8
1,151,780	-		IAI47_05445	0.44	+0.5
1,151,780	-		IAI47_05445	0.44	+2.2
1,151,780	-		IAI47_05445	0.44	+0.9
1,151,808	-		IAI47_05445	0.47	+0.3
1,151,808	-		IAI47_05445	0.47	+0.1
1,151,825	+		IAI47_05445	0.49	+1.9
1,151,825	+		IAI47_05445	0.49	-0.1
1,151,825	+		IAI47_05445	0.49	+0.3
1,151,826	-		IAI47_05445	0.50	-0.2
1,151,826	-		IAI47_05445	0.50	+0.3
1,151,826	-		IAI47_05445	0.50	-0.2
1,151,992	+		IAI47_05445	0.71	+0.3
1,151,992	+		IAI47_05445	0.71	+0.3
1,151,993	-		IAI47_05445	0.71	+0.0
1,151,993	-		IAI47_05445	0.71	+0.0
1,151,993	-		IAI47_05445	0.71	+0.3
1,151,993	-		IAI47_05445	0.71	+0.3
1,152,021	-		IAI47_05445	0.75	+1.1
1,152,058	+		IAI47_05445	0.80	+0.4
1,152,059	-		IAI47_05445	0.80	-0.3
1,152,089	+		IAI47_05445	0.84	-0.4
1,152,089	+		IAI47_05445	0.84	-0.3
1,152,090	-		IAI47_05445	0.84	+0.7
1,152,090	-		IAI47_05445	0.84	+0.0
1,152,090	-		IAI47_05445	0.84	+0.3
1,152,090	-		IAI47_05445	0.84	-0.3
1,152,090	-		IAI47_05445	0.84	+0.3
1,152,090	-		IAI47_05445	0.84	-0.4
1,152,090	-		IAI47_05445	0.84	-1.3
1,152,090	-		IAI47_05445	0.84	+1.4
1,152,164	+				+0.5
1,152,165	-				+0.3
1,152,169	+				+0.9
1,152,169	+				-0.2
1,152,170	-				-0.4
1,152,170	-				+1.3
1,152,183	-				-1.0
1,152,213	-				-0.5
1,152,237	-				+0.1
1,152,237	-				-1.9
1,152,250	+				-1.7
1,152,250	+				+0.2
1,152,250	+				-0.7
1,152,250	+				-0.4
1,152,250	+				-1.3
1,152,250	+				+0.4
1,152,251	-				-0.2
1,152,251	-				+0.6
1,152,251	-				-0.9
1,152,251	-				-0.3
1,152,251	-				-0.7
1,152,251	-				+1.9
1,152,251	-				-1.7
1,152,251	-				-1.1
1,152,252	+				-0.8
1,152,252	+				-1.3
1,152,252	+				-0.4
1,152,252	+				+0.5
1,152,253	-				-2.0
1,152,253	-				-0.4
1,152,253	-				+0.3
1,152,253	-				+0.3
1,152,253	-				+1.6