Strain Fitness in Pantoea sp. MT58 around IAI47_05205

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
1,099,468	+		IAI47_05195	0.19	-1.3
1,099,468	+		IAI47_05195	0.19	+0.3
1,099,469	-		IAI47_05195	0.20	-0.3
1,099,474	+		IAI47_05195	0.20	-0.9
1,099,698	+		IAI47_05195	0.52	-1.3
1,099,764	+		IAI47_05195	0.61	-1.0
1,099,847	+		IAI47_05195	0.73	-1.3
1,100,016	+				+0.3
1,100,036	-				+1.3
1,100,082	-		IAI47_05200	0.14	+1.3
1,100,097	+		IAI47_05200	0.18	+0.7
1,100,127	+		IAI47_05200	0.27	+0.3
1,100,128	-		IAI47_05200	0.27	-0.7
1,100,182	+		IAI47_05200	0.43	-1.3
1,100,183	-		IAI47_05200	0.44	-0.3
1,100,196	-		IAI47_05200	0.47	-1.8
1,100,196	-		IAI47_05200	0.47	-0.9
1,100,196	-		IAI47_05200	0.47	-0.7
1,100,205	+		IAI47_05200	0.50	+0.3
1,100,238	+		IAI47_05200	0.60	+0.3
1,100,281	+		IAI47_05200	0.72	+1.1
1,100,281	+		IAI47_05200	0.72	-1.3
1,100,281	+		IAI47_05200	0.72	-0.4
1,100,281	+		IAI47_05200	0.72	-1.3
1,100,281	+		IAI47_05200	0.72	-0.6
1,100,281	+		IAI47_05200	0.72	+0.2
1,100,281	+		IAI47_05200	0.72	-0.8
1,100,282	-		IAI47_05200	0.73	-0.5
1,100,282	-		IAI47_05200	0.73	+0.0
1,100,427	+				+0.0
1,100,427	+				-0.7
1,100,440	-				+0.8
1,100,446	+				+1.0
1,100,446	+				+0.5
1,100,446	+				-0.3
1,100,447	-				-0.1
1,100,447	-				-0.3
1,100,447	-				-0.1
1,100,459	+				-0.9
1,100,459	+				+1.6
1,100,459	+				+0.1
1,100,459	+				+0.2
1,100,480	-				-0.4
1,100,645	+		IAI47_05205	0.15	+2.0
1,100,671	+		IAI47_05205	0.17	+1.9
1,100,672	-		IAI47_05205	0.17	-0.7
1,100,672	-		IAI47_05205	0.17	-0.3
1,100,686	-		IAI47_05205	0.18	+1.3
1,100,699	-		IAI47_05205	0.19	-0.6
1,100,715	+		IAI47_05205	0.20	+1.0
1,100,715	+		IAI47_05205	0.20	+1.6
1,100,715	+		IAI47_05205	0.20	-0.3
1,100,715	+		IAI47_05205	0.20	+2.7
1,100,715	+		IAI47_05205	0.20	-0.2
1,100,716	-		IAI47_05205	0.20	+1.1
1,100,716	-		IAI47_05205	0.20	+0.2
1,100,716	-		IAI47_05205	0.20	+0.0
1,100,716	-		IAI47_05205	0.20	+0.9
1,100,733	+		IAI47_05205	0.21	-0.8
1,100,733	+		IAI47_05205	0.21	+1.3
1,100,733	+		IAI47_05205	0.21	+0.3
1,100,733	+		IAI47_05205	0.21	+0.1
1,100,733	+		IAI47_05205	0.21	-0.4
1,100,733	+		IAI47_05205	0.21	+0.3
1,100,734	-		IAI47_05205	0.21	+1.6
1,100,734	-		IAI47_05205	0.21	+0.5
1,100,734	-		IAI47_05205	0.21	+2.3
1,100,734	-		IAI47_05205	0.21	-0.9
1,100,734	-		IAI47_05205	0.21	-0.3
1,100,734	-		IAI47_05205	0.21	-0.8
1,100,831	-		IAI47_05205	0.28	-0.4
1,100,831	-		IAI47_05205	0.28	+0.7
1,100,848	+		IAI47_05205	0.29	+0.2
1,100,849	-		IAI47_05205	0.29	+0.3
1,100,866	+		IAI47_05205	0.30	+2.4
1,100,866	+		IAI47_05205	0.30	-0.0
1,100,866	+		IAI47_05205	0.30	-0.3
1,100,866	+		IAI47_05205	0.30	+0.3
1,100,866	+		IAI47_05205	0.30	+0.9
1,100,867	-		IAI47_05205	0.30	-1.3
1,100,896	+		IAI47_05205	0.32	+1.9
1,100,897	-		IAI47_05205	0.32	-0.3
1,100,939	+		IAI47_05205	0.35	+0.5
1,100,940	-		IAI47_05205	0.35	-0.2
1,100,940	-		IAI47_05205	0.35	+1.0
1,100,952	+		IAI47_05205	0.36	+1.1
1,100,952	+		IAI47_05205	0.36	-0.4
1,100,952	+		IAI47_05205	0.36	-0.7
1,100,953	-		IAI47_05205	0.36	+0.2
1,100,991	+		IAI47_05205	0.39	-0.4
1,100,991	+		IAI47_05205	0.39	-0.4
1,100,992	-		IAI47_05205	0.39	+0.6
1,100,992	-		IAI47_05205	0.39	+0.6
1,101,014	-		IAI47_05205	0.40	-0.3
1,101,014	-		IAI47_05205	0.40	+0.0
1,101,036	+		IAI47_05205	0.42	-0.1
1,101,036	+		IAI47_05205	0.42	+0.6
1,101,036	+		IAI47_05205	0.42	-0.8
1,101,036	+		IAI47_05205	0.42	-0.8
1,101,037	-		IAI47_05205	0.42	+1.0
1,101,037	-		IAI47_05205	0.42	-0.6
1,101,037	-		IAI47_05205	0.42	-3.0
1,101,054	-		IAI47_05205	0.43	+0.2
1,101,064	+		IAI47_05205	0.44	-1.7
1,101,065	-		IAI47_05205	0.44	-1.6
1,101,066	+		IAI47_05205	0.44	-1.3
1,101,066	+		IAI47_05205	0.44	+1.7
1,101,067	-		IAI47_05205	0.44	+0.6
1,101,067	-		IAI47_05205	0.44	+0.0
1,101,067	-		IAI47_05205	0.44	+0.2
1,101,067	-		IAI47_05205	0.44	-0.7
1,101,067	-		IAI47_05205	0.44	-0.2
1,101,067	-		IAI47_05205	0.44	-1.7
1,101,110	-		IAI47_05205	0.47	-1.0
1,101,110	-		IAI47_05205	0.47	-0.7
1,101,110	-		IAI47_05205	0.47	-0.5
1,101,301	+		IAI47_05205	0.60	+1.9
1,101,301	+		IAI47_05205	0.60	-0.2
1,101,302	-		IAI47_05205	0.60	-0.2
1,101,311	-		IAI47_05205	0.60	-0.1
1,101,388	+		IAI47_05205	0.66	-0.5
1,101,388	+		IAI47_05205	0.66	-0.1
1,101,388	+		IAI47_05205	0.66	+0.7
1,101,492	-		IAI47_05205	0.73	-1.3
1,101,577	+		IAI47_05205	0.79	-0.1
1,101,578	-		IAI47_05205	0.79	+0.3
1,101,578	-		IAI47_05205	0.79	-0.2
1,101,661	+		IAI47_05205	0.84	-0.8
1,101,661	+		IAI47_05205	0.84	-0.2
1,101,661	+		IAI47_05205	0.84	+0.0
1,101,662	-		IAI47_05205	0.84	-2.0
1,101,662	-		IAI47_05205	0.84	+0.3
1,101,666	+		IAI47_05205	0.85	+0.4
1,101,666	+		IAI47_05205	0.85	+1.3
1,101,667	-		IAI47_05205	0.85	+2.0
1,101,693	-		IAI47_05205	0.87	+0.3
1,101,723	+		IAI47_05205	0.89	-0.3
1,101,723	+		IAI47_05205	0.89	+1.1
1,101,723	+		IAI47_05205	0.89	+1.1
1,101,724	-		IAI47_05205	0.89	+0.3
1,101,724	-		IAI47_05205	0.89	-0.8
1,101,724	-		IAI47_05205	0.89	+0.5
1,101,724	-		IAI47_05205	0.89	+0.3
1,101,752	-				+0.8
1,101,752	-				-0.7
1,101,759	-				+0.6
1,101,759	-				+0.6
1,101,775	+				-0.9
1,101,778	+				-0.5
1,101,779	-				-0.9
1,101,779	-				-0.1
1,101,902	+				-0.0
1,101,903	-				-2.7
1,101,958	+				-2.0
1,101,959	-				+1.3
1,101,975	+				+0.7
1,101,975	+				+0.3
1,101,981	-				+0.3
1,101,981	-				-1.7
1,101,981	-				+0.2
1,101,981	-				-0.0
1,101,981	-				-0.2
1,102,053	+				-1.1
1,102,054	-				-0.1
1,102,097	-				-1.0
1,102,119	+				+0.3
1,102,120	-				-0.7
1,102,120	-				+0.8
1,102,141	+				+0.3
1,102,141	+				+0.3
1,102,141	+				-0.5
1,102,142	-				-0.2
1,102,142	-				+0.3
1,102,142	-				-1.3
1,102,142	-				-0.2
1,102,143	+				+0.0
1,102,143	+				+0.5
1,102,143	+				+0.7
1,102,143	+				-0.4
1,102,143	+				-0.7
1,102,143	+				+1.3
1,102,143	+				-0.7
1,102,143	+				+0.8
1,102,143	+				-1.5
1,102,144	-				-0.3
1,102,144	-				+2.1
1,102,144	-				-0.1
1,102,144	-				+1.1
1,102,144	-				-0.3
1,102,146	+				-1.0
1,102,146	+				+0.3
1,102,147	-				-0.8
1,102,161	+				+0.2
1,102,161	+				+2.3
1,102,161	+				+0.1
1,102,161	+				+0.9
1,102,162	-				+0.6
1,102,162	-				-1.7
1,102,162	-				-0.1
1,102,165	+				+1.1
1,102,166	-				+0.7
1,102,221	-				+0.9
1,102,240	+				+0.3
1,102,290	+				+0.1
1,102,303	+				-1.5
1,102,321	+				+0.4
1,102,322	-				-0.3
1,102,343	-				-1.3
1,102,366	+				+0.4
1,102,366	+				+1.1
1,102,385	+				-0.7
1,102,386	-				+0.7
1,102,403	+				-0.3
1,102,403	+				+0.3
1,102,403	+				+0.6
1,102,404	-				+0.0
1,102,408	-				-0.6
1,102,408	-				-0.2
1,102,414	+				+0.2
1,102,414	+				-0.0
1,102,441	-				-1.7
1,102,469	+				-0.1
1,102,520	+				-0.5
1,102,521	-				-1.4
1,102,521	-				-0.3
1,102,525	-				-0.7
1,102,549	+				-1.0
1,102,549	+				+1.0
1,102,564	+				-0.1
1,102,565	-				-0.7
1,102,580	+				+0.0
1,102,580	+				-1.8
1,102,580	+				+0.3
1,102,580	+				+0.8
1,102,582	+				+0.0
1,102,582	+				-0.4
1,102,582	+				+0.7
1,102,582	+				+1.7
1,102,582	+				+0.0
1,102,582	+				-0.2
1,102,582	+				-1.1
1,102,582	+				+0.5
1,102,582	+				+0.9
1,102,582	+				+2.4
1,102,583	-				+0.8
1,102,583	-				-0.3
1,102,583	-				-0.3
1,102,583	-				+0.3
1,102,583	-				-1.6
1,102,583	-				-0.3
1,102,621	+				+0.3
1,102,621	+				+0.0
1,102,621	+				-1.7
1,102,621	+				+0.3
1,102,621	+				-1.2
1,102,621	+				-0.0
1,102,622	-				+1.7
1,102,622	-				+0.9
1,102,622	-				+0.3
1,102,622	-				+0.7
1,102,622	-				+0.3
1,102,622	-				+0.7
1,102,622	-				-0.9
1,102,622	-				+0.8
1,102,622	-				+1.0
1,102,624	+				-0.3
1,102,624	+				-0.4
1,102,625	-				+0.3
1,102,625	-				+1.3
1,102,625	-				-0.3
1,102,625	-				-1.1
1,102,625	-				-0.8
1,102,678	+				+0.3
1,102,721	-		IAI47_05210	0.13	-0.1
1,102,724	+		IAI47_05210	0.13	-0.5
1,102,725	-		IAI47_05210	0.14	-0.7
1,102,817	+		IAI47_05210	0.29	+0.6
1,102,880	-		IAI47_05210	0.39	+0.1