Experiment: Ying_Nucleobase14 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03980 and IAI47_03985 are separated by 111 nucleotides IAI47_03985 and IAI47_03990 are separated by 54 nucleotides IAI47_03990 and IAI47_03995 are separated by 65 nucleotides IAI47_03995 and IAI47_04000 are separated by 203 nucleotides
IAI47_03980: IAI47_03980 - N-acetylmuramoyl-L-alanine amidase, at 835,647 to 836,891
_03980
IAI47_03985: IAI47_03985 - tRNA-Met, at 837,003 to 837,079
_03985
IAI47_03990: IAI47_03990 - tRNA-Met, at 837,134 to 837,210
_03990
IAI47_03995: IAI47_03995 - tRNA-Met, at 837,276 to 837,352
_03995
IAI47_04000: IAI47_04000 - murein transglycosylase A, at 837,556 to 838,704
_04000
Position (kb) 837
838 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 836.025 kb on - strand, within IAI47_03980 at 836.093 kb on - strand, within IAI47_03980 at 836.127 kb on + strand, within IAI47_03980 at 836.127 kb on + strand, within IAI47_03980 at 836.127 kb on + strand, within IAI47_03980 at 836.127 kb on + strand, within IAI47_03980 at 836.127 kb on + strand, within IAI47_03980 at 836.127 kb on + strand, within IAI47_03980 at 836.128 kb on - strand, within IAI47_03980 at 836.128 kb on - strand, within IAI47_03980 at 836.128 kb on - strand, within IAI47_03980 at 836.128 kb on - strand, within IAI47_03980 at 836.129 kb on + strand, within IAI47_03980 at 836.129 kb on + strand, within IAI47_03980 at 836.129 kb on + strand, within IAI47_03980 at 836.130 kb on - strand, within IAI47_03980 at 836.180 kb on + strand, within IAI47_03980 at 836.207 kb on + strand, within IAI47_03980 at 836.207 kb on + strand, within IAI47_03980 at 836.207 kb on + strand, within IAI47_03980 at 836.207 kb on + strand, within IAI47_03980 at 836.207 kb on + strand, within IAI47_03980 at 836.207 kb on + strand, within IAI47_03980 at 836.208 kb on - strand, within IAI47_03980 at 836.208 kb on - strand, within IAI47_03980 at 836.208 kb on - strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.259 kb on + strand, within IAI47_03980 at 836.260 kb on - strand, within IAI47_03980 at 836.260 kb on - strand, within IAI47_03980 at 836.260 kb on - strand, within IAI47_03980 at 836.260 kb on - strand, within IAI47_03980 at 836.260 kb on - strand, within IAI47_03980 at 836.260 kb on - strand, within IAI47_03980 at 836.260 kb on - strand, within IAI47_03980 at 836.260 kb on - strand, within IAI47_03980 at 836.261 kb on + strand, within IAI47_03980 at 836.261 kb on + strand, within IAI47_03980 at 836.262 kb on - strand, within IAI47_03980 at 836.262 kb on - strand, within IAI47_03980 at 836.279 kb on + strand, within IAI47_03980 at 836.279 kb on + strand, within IAI47_03980 at 836.279 kb on + strand, within IAI47_03980 at 836.279 kb on + strand, within IAI47_03980 at 836.280 kb on - strand, within IAI47_03980 at 836.333 kb on + strand, within IAI47_03980 at 836.333 kb on + strand, within IAI47_03980 at 836.333 kb on + strand, within IAI47_03980 at 836.334 kb on - strand, within IAI47_03980 at 836.343 kb on + strand, within IAI47_03980 at 836.343 kb on + strand, within IAI47_03980 at 836.343 kb on + strand, within IAI47_03980 at 836.343 kb on + strand, within IAI47_03980 at 836.343 kb on + strand, within IAI47_03980 at 836.344 kb on - strand, within IAI47_03980 at 836.344 kb on - strand, within IAI47_03980 at 836.344 kb on - strand, within IAI47_03980 at 836.344 kb on - strand, within IAI47_03980 at 836.344 kb on - strand, within IAI47_03980 at 836.344 kb on - strand, within IAI47_03980 at 836.345 kb on + strand, within IAI47_03980 at 836.345 kb on + strand, within IAI47_03980 at 836.345 kb on + strand, within IAI47_03980 at 836.346 kb on - strand, within IAI47_03980 at 836.346 kb on - strand, within IAI47_03980 at 836.346 kb on - strand, within IAI47_03980 at 836.369 kb on + strand, within IAI47_03980 at 836.369 kb on + strand, within IAI47_03980 at 836.369 kb on + strand, within IAI47_03980 at 836.369 kb on + strand, within IAI47_03980 at 836.370 kb on - strand, within IAI47_03980 at 836.447 kb on + strand, within IAI47_03980 at 836.448 kb on - strand, within IAI47_03980 at 836.448 kb on - strand, within IAI47_03980 at 836.486 kb on - strand, within IAI47_03980 at 836.584 kb on - strand, within IAI47_03980 at 836.607 kb on - strand, within IAI47_03980 at 836.607 kb on - strand, within IAI47_03980 at 836.607 kb on - strand, within IAI47_03980 at 836.607 kb on - strand, within IAI47_03980 at 836.607 kb on - strand, within IAI47_03980 at 836.648 kb on + strand, within IAI47_03980 at 836.696 kb on + strand, within IAI47_03980 at 836.696 kb on + strand, within IAI47_03980 at 836.696 kb on + strand, within IAI47_03980 at 836.697 kb on - strand, within IAI47_03980 at 836.747 kb on + strand, within IAI47_03980 at 836.747 kb on + strand, within IAI47_03980 at 836.747 kb on + strand, within IAI47_03980 at 836.748 kb on - strand, within IAI47_03980 at 836.768 kb on + strand at 836.768 kb on + strand at 836.769 kb on - strand at 836.769 kb on - strand at 836.774 kb on + strand at 836.774 kb on + strand at 836.775 kb on - strand at 836.775 kb on - strand at 836.775 kb on - strand at 836.792 kb on + strand at 836.792 kb on + strand at 836.792 kb on + strand at 836.792 kb on + strand at 836.792 kb on + strand at 836.792 kb on + strand at 836.792 kb on + strand at 836.793 kb on - strand at 836.849 kb on + strand at 836.850 kb on - strand at 836.856 kb on + strand at 836.856 kb on + strand at 836.856 kb on + strand at 836.856 kb on + strand at 836.856 kb on + strand at 836.856 kb on + strand at 836.857 kb on - strand at 836.857 kb on - strand at 836.857 kb on - strand at 836.857 kb on - strand at 836.857 kb on - strand at 836.857 kb on - strand at 836.903 kb on + strand at 836.904 kb on - strand at 836.904 kb on - strand at 836.907 kb on + strand at 836.908 kb on - strand at 836.908 kb on - strand at 836.908 kb on - strand at 836.908 kb on - strand at 836.908 kb on - strand at 836.908 kb on - strand at 836.908 kb on - strand at 836.908 kb on - strand at 836.945 kb on + strand at 836.996 kb on - strand at 836.996 kb on - strand at 836.996 kb on - strand at 837.090 kb on - strand at 837.131 kb on - strand at 837.132 kb on - strand at 837.225 kb on - strand at 837.225 kb on - strand at 837.225 kb on - strand at 837.225 kb on - strand at 837.225 kb on - strand at 837.228 kb on - strand at 837.234 kb on - strand at 837.234 kb on - strand at 837.257 kb on - strand at 837.274 kb on - strand at 837.274 kb on - strand at 837.274 kb on - strand at 837.274 kb on - strand at 837.274 kb on - strand at 837.274 kb on - strand at 837.369 kb on - strand at 837.369 kb on - strand at 837.369 kb on - strand at 837.369 kb on - strand at 837.369 kb on - strand at 837.371 kb on - strand at 837.408 kb on + strand at 837.409 kb on - strand at 837.420 kb on + strand at 837.420 kb on + strand at 837.421 kb on - strand at 837.455 kb on + strand at 837.456 kb on - strand at 837.456 kb on - strand at 837.471 kb on - strand at 837.518 kb on + strand at 837.519 kb on - strand at 837.539 kb on + strand at 837.540 kb on - strand at 837.541 kb on + strand at 837.541 kb on + strand at 837.542 kb on - strand at 837.542 kb on - strand at 837.554 kb on + strand at 837.555 kb on - strand at 837.555 kb on - strand at 837.577 kb on + strand at 837.577 kb on + strand at 837.577 kb on + strand at 837.577 kb on + strand at 837.577 kb on + strand at 837.577 kb on + strand at 837.578 kb on - strand at 837.578 kb on - strand at 837.578 kb on - strand at 837.578 kb on - strand at 837.578 kb on - strand at 837.596 kb on + strand at 837.596 kb on + strand at 837.596 kb on + strand at 837.597 kb on - strand at 837.597 kb on - strand at 837.600 kb on + strand at 837.600 kb on + strand at 837.600 kb on + strand at 837.601 kb on - strand at 837.618 kb on + strand at 837.618 kb on + strand at 837.618 kb on + strand at 837.618 kb on + strand at 837.618 kb on + strand at 837.619 kb on - strand at 837.619 kb on - strand at 837.619 kb on - strand at 837.649 kb on + strand at 837.649 kb on + strand at 837.649 kb on + strand at 837.650 kb on - strand at 837.650 kb on - strand at 837.650 kb on - strand at 837.650 kb on - strand at 837.651 kb on + strand at 837.651 kb on + strand at 837.651 kb on + strand at 837.651 kb on + strand at 837.651 kb on + strand at 837.652 kb on - strand at 837.652 kb on - strand at 837.652 kb on - strand at 837.652 kb on - strand at 837.652 kb on - strand at 837.652 kb on - strand at 837.652 kb on - strand at 837.652 kb on - strand at 837.686 kb on + strand, within IAI47_04000 at 837.686 kb on + strand, within IAI47_04000 at 837.717 kb on + strand, within IAI47_04000 at 837.717 kb on + strand, within IAI47_04000 at 837.717 kb on + strand, within IAI47_04000 at 837.718 kb on - strand, within IAI47_04000 at 837.775 kb on + strand, within IAI47_04000 at 837.775 kb on + strand, within IAI47_04000 at 837.775 kb on + strand, within IAI47_04000 at 837.775 kb on + strand, within IAI47_04000 at 837.776 kb on - strand, within IAI47_04000 at 837.776 kb on - strand, within IAI47_04000 at 837.776 kb on - strand, within IAI47_04000 at 837.776 kb on - strand, within IAI47_04000 at 837.776 kb on - strand, within IAI47_04000 at 837.776 kb on - strand, within IAI47_04000 at 837.776 kb on - strand, within IAI47_04000 at 837.776 kb on - strand, within IAI47_04000 at 837.776 kb on - strand, within IAI47_04000 at 837.777 kb on + strand, within IAI47_04000 at 837.777 kb on + strand, within IAI47_04000 at 837.777 kb on + strand, within IAI47_04000 at 837.777 kb on + strand, within IAI47_04000 at 837.777 kb on + strand, within IAI47_04000 at 837.777 kb on + strand, within IAI47_04000 at 837.778 kb on - strand, within IAI47_04000 at 837.778 kb on - strand, within IAI47_04000 at 837.778 kb on - strand, within IAI47_04000 at 837.796 kb on + strand, within IAI47_04000 at 837.796 kb on + strand, within IAI47_04000 at 837.796 kb on + strand, within IAI47_04000 at 837.796 kb on + strand, within IAI47_04000 at 837.796 kb on + strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.797 kb on - strand, within IAI47_04000 at 837.853 kb on + strand, within IAI47_04000 at 837.854 kb on - strand, within IAI47_04000 at 837.892 kb on + strand, within IAI47_04000 at 837.892 kb on + strand, within IAI47_04000 at 837.892 kb on + strand, within IAI47_04000 at 837.892 kb on + strand, within IAI47_04000 at 837.892 kb on + strand, within IAI47_04000 at 837.892 kb on + strand, within IAI47_04000 at 837.893 kb on - strand, within IAI47_04000 at 837.893 kb on - strand, within IAI47_04000 at 837.893 kb on - strand, within IAI47_04000 at 837.893 kb on - strand, within IAI47_04000 at 837.893 kb on - strand, within IAI47_04000 at 837.893 kb on - strand, within IAI47_04000 at 837.893 kb on - strand, within IAI47_04000 at 837.893 kb on - strand, within IAI47_04000 at 837.897 kb on + strand, within IAI47_04000 at 837.898 kb on - strand, within IAI47_04000 at 837.898 kb on - strand, within IAI47_04000 at 837.919 kb on + strand, within IAI47_04000 at 837.919 kb on + strand, within IAI47_04000 at 837.919 kb on + strand, within IAI47_04000 at 837.919 kb on + strand, within IAI47_04000 at 837.919 kb on + strand, within IAI47_04000 at 837.919 kb on + strand, within IAI47_04000 at 837.919 kb on + strand, within IAI47_04000 at 837.919 kb on + strand, within IAI47_04000 at 837.919 kb on + strand, within IAI47_04000 at 837.920 kb on - strand, within IAI47_04000 at 837.920 kb on - strand, within IAI47_04000 at 837.920 kb on - strand, within IAI47_04000 at 837.920 kb on - strand, within IAI47_04000 at 837.920 kb on - strand, within IAI47_04000 at 837.920 kb on - strand, within IAI47_04000 at 837.920 kb on - strand, within IAI47_04000 at 837.943 kb on + strand, within IAI47_04000 at 837.943 kb on + strand, within IAI47_04000 at 837.944 kb on - strand, within IAI47_04000 at 837.944 kb on - strand, within IAI47_04000 at 837.944 kb on - strand, within IAI47_04000 at 837.944 kb on - strand, within IAI47_04000 at 837.976 kb on + strand, within IAI47_04000 at 837.977 kb on - strand, within IAI47_04000 at 837.977 kb on - strand, within IAI47_04000 at 838.011 kb on - strand, within IAI47_04000 at 838.026 kb on + strand, within IAI47_04000 at 838.026 kb on + strand, within IAI47_04000 at 838.026 kb on + strand, within IAI47_04000 at 838.026 kb on + strand, within IAI47_04000 at 838.026 kb on + strand, within IAI47_04000 at 838.026 kb on + strand, within IAI47_04000 at 838.026 kb on + strand, within IAI47_04000 at 838.026 kb on + strand, within IAI47_04000 at 838.026 kb on + strand, within IAI47_04000 at 838.026 kb on + strand, within IAI47_04000 at 838.026 kb on + strand, within IAI47_04000 at 838.027 kb on - strand, within IAI47_04000 at 838.027 kb on - strand, within IAI47_04000 at 838.027 kb on - strand, within IAI47_04000 at 838.027 kb on - strand, within IAI47_04000 at 838.027 kb on - strand, within IAI47_04000 at 838.027 kb on - strand, within IAI47_04000 at 838.027 kb on - strand, within IAI47_04000 at 838.027 kb on - strand, within IAI47_04000 at 838.027 kb on - strand, within IAI47_04000 at 838.027 kb on - strand, within IAI47_04000 at 838.030 kb on + strand, within IAI47_04000 at 838.030 kb on + strand, within IAI47_04000 at 838.030 kb on + strand, within IAI47_04000 at 838.030 kb on + strand, within IAI47_04000 at 838.030 kb on + strand, within IAI47_04000 at 838.030 kb on + strand, within IAI47_04000 at 838.030 kb on + strand, within IAI47_04000 at 838.030 kb on + strand, within IAI47_04000 at 838.031 kb on - strand, within IAI47_04000 at 838.031 kb on - strand, within IAI47_04000 at 838.031 kb on - strand, within IAI47_04000 at 838.031 kb on - strand, within IAI47_04000 at 838.031 kb on - strand, within IAI47_04000 at 838.031 kb on - strand, within IAI47_04000 at 838.031 kb on - strand, within IAI47_04000 at 838.031 kb on - strand, within IAI47_04000 at 838.031 kb on - strand, within IAI47_04000 at 838.032 kb on + strand, within IAI47_04000 at 838.032 kb on + strand, within IAI47_04000 at 838.033 kb on - strand, within IAI47_04000 at 838.054 kb on + strand, within IAI47_04000 at 838.054 kb on + strand, within IAI47_04000 at 838.054 kb on + strand, within IAI47_04000 at 838.054 kb on + strand, within IAI47_04000 at 838.055 kb on - strand, within IAI47_04000 at 838.066 kb on + strand, within IAI47_04000 at 838.067 kb on - strand, within IAI47_04000 at 838.067 kb on - strand, within IAI47_04000
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3 remove 836,025 - IAI47_03980 0.30 +0.1 836,093 - IAI47_03980 0.36 -0.6 836,127 + IAI47_03980 0.39 +0.2 836,127 + IAI47_03980 0.39 -0.4 836,127 + IAI47_03980 0.39 -0.0 836,127 + IAI47_03980 0.39 -0.6 836,127 + IAI47_03980 0.39 -0.4 836,127 + IAI47_03980 0.39 +0.3 836,128 - IAI47_03980 0.39 +0.0 836,128 - IAI47_03980 0.39 -0.1 836,128 - IAI47_03980 0.39 -0.6 836,128 - IAI47_03980 0.39 -0.2 836,129 + IAI47_03980 0.39 -0.0 836,129 + IAI47_03980 0.39 +0.1 836,129 + IAI47_03980 0.39 +0.1 836,130 - IAI47_03980 0.39 +0.9 836,180 + IAI47_03980 0.43 -1.4 836,207 + IAI47_03980 0.45 -0.2 836,207 + IAI47_03980 0.45 +1.9 836,207 + IAI47_03980 0.45 +0.4 836,207 + IAI47_03980 0.45 +0.9 836,207 + IAI47_03980 0.45 +0.7 836,207 + IAI47_03980 0.45 +0.9 836,208 - IAI47_03980 0.45 -0.0 836,208 - IAI47_03980 0.45 +0.8 836,208 - IAI47_03980 0.45 -0.2 836,259 + IAI47_03980 0.49 +2.0 836,259 + IAI47_03980 0.49 -0.4 836,259 + IAI47_03980 0.49 +1.1 836,259 + IAI47_03980 0.49 +0.3 836,259 + IAI47_03980 0.49 -0.6 836,259 + IAI47_03980 0.49 -0.8 836,259 + IAI47_03980 0.49 +0.5 836,259 + IAI47_03980 0.49 +2.7 836,259 + IAI47_03980 0.49 -0.9 836,259 + IAI47_03980 0.49 +0.4 836,259 + IAI47_03980 0.49 +0.6 836,259 + IAI47_03980 0.49 +0.1 836,260 - IAI47_03980 0.49 -0.3 836,260 - IAI47_03980 0.49 -0.3 836,260 - IAI47_03980 0.49 +0.5 836,260 - IAI47_03980 0.49 +1.4 836,260 - IAI47_03980 0.49 -0.8 836,260 - IAI47_03980 0.49 +1.6 836,260 - IAI47_03980 0.49 -2.6 836,260 - IAI47_03980 0.49 -0.4 836,261 + IAI47_03980 0.49 +1.1 836,261 + IAI47_03980 0.49 +0.2 836,262 - IAI47_03980 0.49 -1.4 836,262 - IAI47_03980 0.49 -2.3 836,279 + IAI47_03980 0.51 +0.6 836,279 + IAI47_03980 0.51 +0.4 836,279 + IAI47_03980 0.51 -1.5 836,279 + IAI47_03980 0.51 -0.4 836,280 - IAI47_03980 0.51 +0.7 836,333 + IAI47_03980 0.55 +0.9 836,333 + IAI47_03980 0.55 -0.4 836,333 + IAI47_03980 0.55 -0.4 836,334 - IAI47_03980 0.55 -0.4 836,343 + IAI47_03980 0.56 +0.5 836,343 + IAI47_03980 0.56 +0.5 836,343 + IAI47_03980 0.56 +0.1 836,343 + IAI47_03980 0.56 -1.2 836,343 + IAI47_03980 0.56 -0.1 836,344 - IAI47_03980 0.56 -1.1 836,344 - IAI47_03980 0.56 -1.5 836,344 - IAI47_03980 0.56 +1.8 836,344 - IAI47_03980 0.56 +0.2 836,344 - IAI47_03980 0.56 -1.0 836,344 - IAI47_03980 0.56 -0.1 836,345 + IAI47_03980 0.56 -0.4 836,345 + IAI47_03980 0.56 -0.6 836,345 + IAI47_03980 0.56 +0.4 836,346 - IAI47_03980 0.56 -0.1 836,346 - IAI47_03980 0.56 -0.3 836,346 - IAI47_03980 0.56 +0.2 836,369 + IAI47_03980 0.58 +0.4 836,369 + IAI47_03980 0.58 -0.1 836,369 + IAI47_03980 0.58 -1.0 836,369 + IAI47_03980 0.58 +0.4 836,370 - IAI47_03980 0.58 +0.3 836,447 + IAI47_03980 0.64 +1.4 836,448 - IAI47_03980 0.64 +2.7 836,448 - IAI47_03980 0.64 +2.7 836,486 - IAI47_03980 0.67 +0.4 836,584 - IAI47_03980 0.75 -1.1 836,607 - IAI47_03980 0.77 -1.4 836,607 - IAI47_03980 0.77 -0.3 836,607 - IAI47_03980 0.77 -0.6 836,607 - IAI47_03980 0.77 +2.2 836,607 - IAI47_03980 0.77 -1.4 836,648 + IAI47_03980 0.80 -0.4 836,696 + IAI47_03980 0.84 -1.4 836,696 + IAI47_03980 0.84 -0.8 836,696 + IAI47_03980 0.84 -1.6 836,697 - IAI47_03980 0.84 +0.4 836,747 + IAI47_03980 0.88 -0.1 836,747 + IAI47_03980 0.88 +1.0 836,747 + IAI47_03980 0.88 -0.8 836,748 - IAI47_03980 0.88 -0.8 836,768 + +0.0 836,768 + -1.1 836,769 - +0.2 836,769 - -0.1 836,774 + +0.0 836,774 + +2.2 836,775 - +1.7 836,775 - -0.2 836,775 - -0.4 836,792 + -1.6 836,792 + +0.6 836,792 + -0.8 836,792 + -0.4 836,792 + +0.1 836,792 + +1.4 836,792 + -0.5 836,793 - 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IAI47_04000 0.44 -0.8 838,067 - IAI47_04000 0.44 -0.6
Or see this region's nucleotide sequence