Experiment: Ying_Nucleobase14 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02305 and IAI47_02310 are separated by 3 nucleotides IAI47_02310 and IAI47_02315 are separated by 3 nucleotides IAI47_02315 and IAI47_02320 overlap by 4 nucleotides IAI47_02320 and IAI47_02325 overlap by 34 nucleotides
IAI47_02305: IAI47_02305 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 477,297 to 477,845
_02305
IAI47_02310: IAI47_02310 - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 477,849 to 478,421
_02310
IAI47_02315: IAI47_02315 - shikimate dehydrogenase, at 478,425 to 479,243
_02315
IAI47_02320: IAI47_02320 - DUF1488 domain-containing protein, at 479,240 to 479,497
_02320
IAI47_02325: IAI47_02325 - gamma carbonic anhydrase family protein, at 479,464 to 480,018
_02325
Position (kb) 478
479
480 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 477.436 kb on + strand, within IAI47_02305 at 477.437 kb on - strand, within IAI47_02305 at 477.437 kb on - strand, within IAI47_02305 at 477.437 kb on - strand, within IAI47_02305 at 477.539 kb on + strand, within IAI47_02305 at 477.570 kb on + strand, within IAI47_02305 at 477.637 kb on + strand, within IAI47_02305 at 477.637 kb on + strand, within IAI47_02305 at 477.637 kb on + strand, within IAI47_02305 at 477.741 kb on + strand, within IAI47_02305 at 477.741 kb on + strand, within IAI47_02305 at 477.742 kb on - strand, within IAI47_02305 at 477.742 kb on - strand, within IAI47_02305 at 477.742 kb on - strand, within IAI47_02305 at 477.760 kb on + strand, within IAI47_02305 at 477.761 kb on - strand, within IAI47_02305 at 477.788 kb on + strand, within IAI47_02305 at 477.788 kb on + strand, within IAI47_02305 at 477.806 kb on + strand at 477.806 kb on + strand at 477.806 kb on + strand at 477.843 kb on + strand at 477.843 kb on + strand at 477.843 kb on + strand at 477.843 kb on + strand at 478.419 kb on + strand at 479.222 kb on + strand at 479.222 kb on + strand at 479.223 kb on - strand at 479.223 kb on - strand at 479.253 kb on + strand at 479.254 kb on - strand at 479.254 kb on - strand at 479.276 kb on + strand, within IAI47_02320 at 479.276 kb on + strand, within IAI47_02320 at 479.276 kb on + strand, within IAI47_02320 at 479.276 kb on + strand, within IAI47_02320 at 479.276 kb on + strand, within IAI47_02320 at 479.276 kb on + strand, within IAI47_02320 at 479.276 kb on + strand, within IAI47_02320 at 479.276 kb on + strand, within IAI47_02320 at 479.277 kb on - strand, within IAI47_02320 at 479.277 kb on - strand, within IAI47_02320 at 479.277 kb on - strand, within IAI47_02320 at 479.277 kb on - strand, within IAI47_02320 at 479.277 kb on - strand, within IAI47_02320 at 479.277 kb on - strand, within IAI47_02320 at 479.277 kb on - strand, within IAI47_02320 at 479.277 kb on - strand, within IAI47_02320 at 479.277 kb on - strand, within IAI47_02320 at 479.361 kb on + strand, within IAI47_02320 at 479.440 kb on + strand, within IAI47_02320 at 479.481 kb on + strand at 479.481 kb on + strand at 479.495 kb on + strand at 479.495 kb on + strand at 479.495 kb on + strand at 479.495 kb on + strand at 479.495 kb on + strand at 479.495 kb on + strand at 479.496 kb on - strand at 479.496 kb on - strand at 479.496 kb on - strand at 479.496 kb on - strand at 479.496 kb on - strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.516 kb on + strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.517 kb on - strand at 479.532 kb on - strand, within IAI47_02325 at 479.532 kb on - strand, within IAI47_02325 at 479.536 kb on + strand, within IAI47_02325 at 479.537 kb on - strand, within IAI47_02325 at 479.537 kb on - strand, within IAI47_02325 at 479.559 kb on + strand, within IAI47_02325 at 479.560 kb on - strand, within IAI47_02325 at 479.594 kb on + strand, within IAI47_02325 at 479.594 kb on + strand, within IAI47_02325 at 479.594 kb on + strand, within IAI47_02325 at 479.595 kb on - strand, within IAI47_02325 at 479.595 kb on - strand, within IAI47_02325 at 479.595 kb on - strand, within IAI47_02325 at 479.595 kb on - strand, within IAI47_02325 at 479.595 kb on - strand, within IAI47_02325 at 479.595 kb on - strand, within IAI47_02325 at 479.600 kb on + strand, within IAI47_02325 at 479.600 kb on + strand, within IAI47_02325 at 479.601 kb on - strand, within IAI47_02325 at 479.601 kb on - strand, within IAI47_02325 at 479.619 kb on + strand, within IAI47_02325 at 479.665 kb on + strand, within IAI47_02325 at 479.665 kb on + strand, within IAI47_02325 at 479.666 kb on - strand, within IAI47_02325 at 479.666 kb on - strand, within IAI47_02325 at 479.668 kb on + strand, within IAI47_02325 at 479.668 kb on + strand, within IAI47_02325 at 479.668 kb on + strand, within IAI47_02325 at 479.668 kb on + strand, within IAI47_02325 at 479.669 kb on - strand, within IAI47_02325 at 479.669 kb on - strand, within IAI47_02325 at 479.669 kb on - strand, within IAI47_02325 at 479.669 kb on - strand, within IAI47_02325 at 479.669 kb on - strand, within IAI47_02325 at 479.669 kb on - strand, within IAI47_02325 at 479.671 kb on + strand, within IAI47_02325 at 479.671 kb on + strand, within IAI47_02325 at 479.671 kb on + strand, within IAI47_02325 at 479.671 kb on + strand, within IAI47_02325 at 479.672 kb on - strand, within IAI47_02325 at 479.672 kb on - strand, within IAI47_02325 at 479.672 kb on - strand, within IAI47_02325 at 479.724 kb on + strand, within IAI47_02325 at 479.724 kb on + strand, within IAI47_02325 at 479.724 kb on + strand, within IAI47_02325 at 479.724 kb on + strand, within IAI47_02325 at 479.724 kb on + strand, within IAI47_02325 at 479.725 kb on - strand, within IAI47_02325 at 479.725 kb on - strand, within IAI47_02325 at 479.725 kb on - strand, within IAI47_02325 at 479.772 kb on + strand, within IAI47_02325 at 479.772 kb on + strand, within IAI47_02325 at 479.772 kb on + strand, within IAI47_02325 at 479.773 kb on - strand, within IAI47_02325 at 479.775 kb on + strand, within IAI47_02325 at 479.775 kb on + strand, within IAI47_02325 at 479.775 kb on + strand, within IAI47_02325 at 479.775 kb on + strand, within IAI47_02325 at 479.775 kb on + strand, within IAI47_02325 at 479.775 kb on + strand, within IAI47_02325 at 479.775 kb on + strand, within IAI47_02325 at 479.776 kb on - strand, within IAI47_02325 at 479.776 kb on - strand, within IAI47_02325 at 479.776 kb on - strand, within IAI47_02325 at 479.776 kb on - strand, within IAI47_02325 at 479.776 kb on - strand, within IAI47_02325 at 479.776 kb on - strand, within IAI47_02325 at 479.776 kb on - strand, within IAI47_02325 at 479.776 kb on - strand, within IAI47_02325 at 479.808 kb on + strand, within IAI47_02325 at 479.808 kb on + strand, within IAI47_02325 at 479.809 kb on - strand, within IAI47_02325 at 479.809 kb on - strand, within IAI47_02325 at 479.809 kb on - strand, within IAI47_02325 at 479.814 kb on + strand, within IAI47_02325 at 479.814 kb on + strand, within IAI47_02325 at 479.814 kb on + strand, within IAI47_02325 at 479.815 kb on - strand, within IAI47_02325 at 479.922 kb on + strand, within IAI47_02325 at 479.923 kb on - strand, within IAI47_02325 at 479.923 kb on - strand, within IAI47_02325 at 479.923 kb on - strand, within IAI47_02325 at 479.961 kb on + strand, within IAI47_02325 at 479.961 kb on + strand, within IAI47_02325 at 479.962 kb on - strand, within IAI47_02325 at 479.962 kb on - strand, within IAI47_02325 at 479.994 kb on + strand at 479.994 kb on + strand at 479.994 kb on + strand at 479.994 kb on + strand at 479.994 kb on + strand at 479.995 kb on - strand at 479.995 kb on - strand at 479.996 kb on + strand at 479.996 kb on + strand at 479.997 kb on - strand at 480.004 kb on + strand at 480.004 kb on + strand at 480.064 kb on - strand at 480.064 kb on - strand at 480.124 kb on + strand at 480.124 kb on + strand at 480.124 kb on + strand at 480.124 kb on + strand at 480.125 kb on - strand at 480.125 kb on - strand at 480.125 kb on - strand at 480.125 kb on - strand at 480.126 kb on + strand at 480.127 kb on - strand at 480.138 kb on + strand at 480.138 kb on + strand at 480.181 kb on - strand at 480.181 kb on - strand at 480.181 kb on - strand at 480.181 kb on - strand at 480.183 kb on - strand at 480.183 kb on - strand at 480.183 kb on - strand at 480.183 kb on - strand at 480.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3 remove 477,436 + IAI47_02305 0.25 +0.4 477,437 - IAI47_02305 0.26 -2.6 477,437 - IAI47_02305 0.26 -3.1 477,437 - IAI47_02305 0.26 -2.0 477,539 + IAI47_02305 0.44 +0.6 477,570 + IAI47_02305 0.50 +1.4 477,637 + IAI47_02305 0.62 -1.0 477,637 + IAI47_02305 0.62 -0.6 477,637 + IAI47_02305 0.62 -1.2 477,741 + IAI47_02305 0.81 +0.1 477,741 + IAI47_02305 0.81 +0.4 477,742 - IAI47_02305 0.81 -0.3 477,742 - IAI47_02305 0.81 -1.6 477,742 - IAI47_02305 0.81 -1.5 477,760 + IAI47_02305 0.84 +0.4 477,761 - IAI47_02305 0.85 -1.4 477,788 + IAI47_02305 0.89 -1.0 477,788 + IAI47_02305 0.89 +0.4 477,806 + -0.2 477,806 + -0.6 477,806 + +2.9 477,843 + +3.4 477,843 + +0.4 477,843 + -0.4 477,843 + -0.6 478,419 + -4.9 479,222 + -0.5 479,222 + +0.0 479,223 - -2.3 479,223 - -1.2 479,253 + +0.2 479,254 - -0.8 479,254 - -0.2 479,276 + IAI47_02320 0.14 +0.6 479,276 + IAI47_02320 0.14 -0.2 479,276 + IAI47_02320 0.14 -2.1 479,276 + IAI47_02320 0.14 +0.1 479,276 + IAI47_02320 0.14 -0.1 479,276 + IAI47_02320 0.14 -0.8 479,276 + IAI47_02320 0.14 -1.2 479,276 + IAI47_02320 0.14 -1.6 479,277 - IAI47_02320 0.14 +0.6 479,277 - IAI47_02320 0.14 +0.6 479,277 - IAI47_02320 0.14 +0.6 479,277 - IAI47_02320 0.14 +0.4 479,277 - IAI47_02320 0.14 +0.4 479,277 - IAI47_02320 0.14 +1.8 479,277 - IAI47_02320 0.14 -0.8 479,277 - IAI47_02320 0.14 +1.0 479,277 - IAI47_02320 0.14 +1.6 479,361 + IAI47_02320 0.47 -1.7 479,440 + IAI47_02320 0.78 +1.4 479,481 + -0.5 479,481 + -0.3 479,495 + -0.1 479,495 + -0.5 479,495 + +0.8 479,495 + +0.4 479,495 + -1.6 479,495 + -0.9 479,496 - +0.1 479,496 - -1.2 479,496 - -1.2 479,496 - -1.4 479,496 - -0.3 479,516 + -0.5 479,516 + +1.5 479,516 + +1.2 479,516 + +0.6 479,516 + -0.2 479,516 + -1.0 479,516 + +0.4 479,516 + -0.2 479,516 + -1.2 479,516 + -0.4 479,516 + -0.1 479,516 + +1.4 479,516 + -0.4 479,517 - +3.2 479,517 - -0.6 479,517 - +0.4 479,517 - +2.1 479,517 - -1.6 479,517 - +0.4 479,517 - -1.6 479,517 - -0.2 479,517 - +1.7 479,517 - +0.1 479,517 - -1.2 479,517 - -0.3 479,517 - -0.1 479,517 - +0.7 479,517 - -2.3 479,517 - +0.2 479,532 - IAI47_02325 0.12 +0.7 479,532 - IAI47_02325 0.12 +0.2 479,536 + IAI47_02325 0.13 -1.6 479,537 - IAI47_02325 0.13 -0.2 479,537 - IAI47_02325 0.13 +2.9 479,559 + IAI47_02325 0.17 -1.1 479,560 - IAI47_02325 0.17 -1.0 479,594 + IAI47_02325 0.23 +0.1 479,594 + IAI47_02325 0.23 +2.7 479,594 + IAI47_02325 0.23 +2.7 479,595 - IAI47_02325 0.24 -1.6 479,595 - IAI47_02325 0.24 -0.3 479,595 - IAI47_02325 0.24 +0.1 479,595 - IAI47_02325 0.24 -0.3 479,595 - IAI47_02325 0.24 -0.8 479,595 - IAI47_02325 0.24 +0.2 479,600 + IAI47_02325 0.25 +2.2 479,600 + IAI47_02325 0.25 -0.6 479,601 - IAI47_02325 0.25 +0.4 479,601 - IAI47_02325 0.25 -2.2 479,619 + IAI47_02325 0.28 -1.0 479,665 + IAI47_02325 0.36 +0.7 479,665 + IAI47_02325 0.36 -0.4 479,666 - IAI47_02325 0.36 -0.6 479,666 - IAI47_02325 0.36 +1.3 479,668 + IAI47_02325 0.37 +0.6 479,668 + IAI47_02325 0.37 +0.0 479,668 + IAI47_02325 0.37 -0.6 479,668 + IAI47_02325 0.37 +0.4 479,669 - IAI47_02325 0.37 -2.5 479,669 - IAI47_02325 0.37 +0.4 479,669 - IAI47_02325 0.37 -0.2 479,669 - IAI47_02325 0.37 -0.3 479,669 - IAI47_02325 0.37 +1.9 479,669 - IAI47_02325 0.37 +0.3 479,671 + IAI47_02325 0.37 -0.6 479,671 + IAI47_02325 0.37 +0.4 479,671 + IAI47_02325 0.37 +1.4 479,671 + IAI47_02325 0.37 -1.1 479,672 - IAI47_02325 0.37 +1.9 479,672 - IAI47_02325 0.37 -0.1 479,672 - IAI47_02325 0.37 -1.5 479,724 + IAI47_02325 0.47 -1.0 479,724 + IAI47_02325 0.47 -0.1 479,724 + IAI47_02325 0.47 -0.2 479,724 + IAI47_02325 0.47 +0.8 479,724 + IAI47_02325 0.47 -0.5 479,725 - IAI47_02325 0.47 -1.0 479,725 - IAI47_02325 0.47 -0.5 479,725 - IAI47_02325 0.47 +0.3 479,772 + IAI47_02325 0.55 -0.9 479,772 + IAI47_02325 0.55 +1.4 479,772 + IAI47_02325 0.55 -0.6 479,773 - IAI47_02325 0.56 -0.4 479,775 + IAI47_02325 0.56 -0.1 479,775 + IAI47_02325 0.56 -1.8 479,775 + IAI47_02325 0.56 -0.1 479,775 + IAI47_02325 0.56 -0.1 479,775 + IAI47_02325 0.56 -0.5 479,775 + IAI47_02325 0.56 -0.8 479,775 + IAI47_02325 0.56 -1.2 479,776 - IAI47_02325 0.56 -1.5 479,776 - IAI47_02325 0.56 +0.0 479,776 - IAI47_02325 0.56 +0.8 479,776 - IAI47_02325 0.56 -0.9 479,776 - IAI47_02325 0.56 +1.0 479,776 - IAI47_02325 0.56 +0.4 479,776 - IAI47_02325 0.56 -0.9 479,776 - IAI47_02325 0.56 +1.2 479,808 + IAI47_02325 0.62 -0.1 479,808 + IAI47_02325 0.62 +0.1 479,809 - IAI47_02325 0.62 -0.2 479,809 - IAI47_02325 0.62 -0.6 479,809 - IAI47_02325 0.62 -0.6 479,814 + IAI47_02325 0.63 +0.4 479,814 + IAI47_02325 0.63 +1.1 479,814 + IAI47_02325 0.63 -0.8 479,815 - IAI47_02325 0.63 -2.5 479,922 + IAI47_02325 0.83 -0.2 479,923 - IAI47_02325 0.83 -0.6 479,923 - IAI47_02325 0.83 +2.7 479,923 - IAI47_02325 0.83 -0.6 479,961 + IAI47_02325 0.90 -1.2 479,961 + IAI47_02325 0.90 -0.1 479,962 - IAI47_02325 0.90 -0.8 479,962 - IAI47_02325 0.90 -1.6 479,994 + -0.5 479,994 + +0.8 479,994 + +0.6 479,994 + -1.2 479,994 + -1.5 479,995 - +0.4 479,995 - -0.4 479,996 + +0.5 479,996 + +0.2 479,997 - +0.4 480,004 + -1.6 480,004 + +1.2 480,064 - +0.5 480,064 - +1.4 480,124 + -0.1 480,124 + +0.4 480,124 + -0.5 480,124 + +0.8 480,125 - +0.8 480,125 - +2.4 480,125 - -1.3 480,125 - +0.0 480,126 + +0.5 480,127 - -0.2 480,138 + +0.4 480,138 + +0.2 480,181 - +1.1 480,181 - -0.2 480,181 - -3.0 480,181 - +0.6 480,183 - +0.4 480,183 - -1.6 480,183 - +0.2 480,183 - +0.9 480,183 - +0.4
Or see this region's nucleotide sequence