Strain Fitness in Pantoea sp. MT58 around IAI47_00925

Experiment: Ying_Nucleobase14 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00920 and IAI47_00925 are separated by 119 nucleotidesIAI47_00925 and IAI47_00930 are separated by 180 nucleotides IAI47_00920: IAI47_00920 - argininosuccinate lyase, at 197,077 to 198,450 _00920 IAI47_00925: IAI47_00925 - hypothetical protein, at 198,570 to 198,716 _00925 IAI47_00930: IAI47_00930 - DNA-binding transcriptional regulator OxyR, at 198,897 to 199,814 _00930 Position (kb) 198 199Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 197.590 kb on + strand, within IAI47_00920at 197.590 kb on + strand, within IAI47_00920at 197.590 kb on + strand, within IAI47_00920at 197.591 kb on - strand, within IAI47_00920at 197.591 kb on - strand, within IAI47_00920at 197.631 kb on + strand, within IAI47_00920at 197.745 kb on + strand, within IAI47_00920at 197.745 kb on + strand, within IAI47_00920at 197.745 kb on + strand, within IAI47_00920at 197.745 kb on + strand, within IAI47_00920at 197.746 kb on - strand, within IAI47_00920at 197.746 kb on - strand, within IAI47_00920at 197.746 kb on - strand, within IAI47_00920at 197.746 kb on - strand, within IAI47_00920at 197.746 kb on - strand, within IAI47_00920at 197.746 kb on - strand, within IAI47_00920at 197.746 kb on - strand, within IAI47_00920at 197.746 kb on - strand, within IAI47_00920at 197.762 kb on + strand, within IAI47_00920at 197.762 kb on + strand, within IAI47_00920at 197.762 kb on + strand, within IAI47_00920at 197.762 kb on + strand, within IAI47_00920at 197.841 kb on + strand, within IAI47_00920at 197.842 kb on - strand, within IAI47_00920at 197.842 kb on - strand, within IAI47_00920at 197.842 kb on - strand, within IAI47_00920at 197.842 kb on - strand, within IAI47_00920at 197.874 kb on + strand, within IAI47_00920at 197.889 kb on + strand, within IAI47_00920at 197.889 kb on + strand, within IAI47_00920at 197.889 kb on + strand, within IAI47_00920at 197.889 kb on + strand, within IAI47_00920at 197.890 kb on - strand, within IAI47_00920at 197.890 kb on - strand, within IAI47_00920at 198.005 kb on + strand, within IAI47_00920at 198.005 kb on + strand, within IAI47_00920at 198.005 kb on + strand, within IAI47_00920at 198.005 kb on + strand, within IAI47_00920at 198.006 kb on - strand, within IAI47_00920at 198.006 kb on - strand, within IAI47_00920at 198.006 kb on - strand, within IAI47_00920at 198.006 kb on - strand, within IAI47_00920at 198.006 kb on - strand, within IAI47_00920at 198.006 kb on - strand, within IAI47_00920at 198.026 kb on - strand, within IAI47_00920at 198.026 kb on - strand, within IAI47_00920at 198.036 kb on + strand, within IAI47_00920at 198.036 kb on + strand, within IAI47_00920at 198.036 kb on + strand, within IAI47_00920at 198.036 kb on + strand, within IAI47_00920at 198.037 kb on - strand, within IAI47_00920at 198.037 kb on - strand, within IAI47_00920at 198.037 kb on - strand, within IAI47_00920at 198.037 kb on - strand, within IAI47_00920at 198.037 kb on - strand, within IAI47_00920at 198.037 kb on - strand, within IAI47_00920at 198.075 kb on + strand, within IAI47_00920at 198.075 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.096 kb on + strand, within IAI47_00920at 198.097 kb on - strand, within IAI47_00920at 198.097 kb on - strand, within IAI47_00920at 198.097 kb on - strand, within IAI47_00920at 198.097 kb on - strand, within IAI47_00920at 198.097 kb on - strand, within IAI47_00920at 198.097 kb on - strand, within IAI47_00920at 198.097 kb on - strand, within IAI47_00920at 198.097 kb on - strand, within IAI47_00920at 198.130 kb on - strand, within IAI47_00920at 198.166 kb on + strand, within IAI47_00920at 198.167 kb on - strand, within IAI47_00920at 198.177 kb on + strand, within IAI47_00920at 198.193 kb on + strand, within IAI47_00920at 198.193 kb on + strand, within IAI47_00920at 198.194 kb on - strand, within IAI47_00920at 198.194 kb on - strand, within IAI47_00920at 198.234 kb on + strand, within IAI47_00920at 198.234 kb on + strand, within IAI47_00920at 198.234 kb on + strand, within IAI47_00920at 198.234 kb on + strand, within IAI47_00920at 198.235 kb on - strand, within IAI47_00920at 198.235 kb on - strand, within IAI47_00920at 198.275 kb on + strand, within IAI47_00920at 198.275 kb on + strand, within IAI47_00920at 198.276 kb on - strand, within IAI47_00920at 198.276 kb on - strand, within IAI47_00920at 198.341 kb on - strandat 198.341 kb on - strandat 198.378 kb on + strandat 198.378 kb on + strandat 198.378 kb on + strandat 198.378 kb on + strandat 198.379 kb on - strandat 198.379 kb on - strandat 198.379 kb on - strandat 198.379 kb on - strandat 198.379 kb on - strandat 198.379 kb on - strandat 198.379 kb on - strandat 198.379 kb on - strandat 198.379 kb on - strandat 198.432 kb on + strandat 198.432 kb on + strandat 198.433 kb on - strandat 198.478 kb on + strandat 198.478 kb on + strandat 198.478 kb on + strandat 198.478 kb on + strandat 198.479 kb on - strandat 198.479 kb on - strandat 198.497 kb on + strandat 198.497 kb on + strandat 198.497 kb on + strandat 198.497 kb on + strandat 198.497 kb on + strandat 198.497 kb on + strandat 198.497 kb on + strandat 198.498 kb on - strandat 198.510 kb on - strandat 198.521 kb on + strandat 198.522 kb on - strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.572 kb on - strandat 198.572 kb on - strandat 198.572 kb on - strandat 198.572 kb on - strandat 198.572 kb on - strandat 198.586 kb on + strand, within IAI47_00925at 198.587 kb on - strand, within IAI47_00925at 198.587 kb on - strand, within IAI47_00925at 198.587 kb on - strand, within IAI47_00925at 198.587 kb on - strand, within IAI47_00925at 198.642 kb on + strand, within IAI47_00925at 198.643 kb on - strand, within IAI47_00925at 198.711 kb on - strandat 198.711 kb on - strandat 198.739 kb on + strandat 198.739 kb on + strandat 198.739 kb on + strandat 198.739 kb on + strandat 198.771 kb on + strandat 198.771 kb on + strandat 198.771 kb on + strandat 198.772 kb on - strandat 198.773 kb on + strandat 198.774 kb on - strandat 198.774 kb on - strandat 198.774 kb on - strandat 198.774 kb on - strandat 198.774 kb on - strandat 198.774 kb on - strandat 198.774 kb on - strandat 198.774 kb on - strandat 198.814 kb on + strandat 198.814 kb on + strandat 198.815 kb on - strandat 198.815 kb on - strandat 198.853 kb on + strandat 198.854 kb on - strandat 198.858 kb on + strandat 198.859 kb on - strandat 198.892 kb on + strandat 198.892 kb on + strandat 198.892 kb on + strandat 198.892 kb on + strandat 198.892 kb on + strandat 198.893 kb on - strandat 198.893 kb on - strandat 198.895 kb on + strandat 198.895 kb on + strandat 198.895 kb on + strandat 198.895 kb on + strandat 198.895 kb on + strandat 198.895 kb on + strandat 198.896 kb on - strandat 198.902 kb on + strandat 198.902 kb on + strandat 198.902 kb on + strandat 198.902 kb on + strandat 198.903 kb on - strandat 198.903 kb on - strandat 198.903 kb on - strandat 198.903 kb on - strandat 198.903 kb on - strandat 198.918 kb on + strandat 198.918 kb on + strandat 198.918 kb on + strandat 198.919 kb on - strandat 198.919 kb on - strandat 198.992 kb on - strand, within IAI47_00930at 198.992 kb on - strand, within IAI47_00930at 199.008 kb on - strand, within IAI47_00930at 199.055 kb on + strand, within IAI47_00930at 199.056 kb on - strand, within IAI47_00930at 199.056 kb on - strand, within IAI47_00930at 199.081 kb on + strand, within IAI47_00930at 199.081 kb on + strand, within IAI47_00930at 199.103 kb on + strand, within IAI47_00930at 199.103 kb on + strand, within IAI47_00930at 199.104 kb on - strand, within IAI47_00930at 199.178 kb on + strand, within IAI47_00930at 199.179 kb on - strand, within IAI47_00930at 199.207 kb on - strand, within IAI47_00930at 199.210 kb on + strand, within IAI47_00930at 199.210 kb on + strand, within IAI47_00930at 199.210 kb on + strand, within IAI47_00930at 199.211 kb on - strand, within IAI47_00930at 199.224 kb on - strand, within IAI47_00930at 199.263 kb on + strand, within IAI47_00930at 199.263 kb on + strand, within IAI47_00930at 199.263 kb on + strand, within IAI47_00930at 199.263 kb on + strand, within IAI47_00930at 199.263 kb on + strand, within IAI47_00930at 199.263 kb on + strand, within IAI47_00930at 199.263 kb on + strand, within IAI47_00930at 199.263 kb on + strand, within IAI47_00930at 199.263 kb on + strand, within IAI47_00930at 199.263 kb on + strand, within IAI47_00930at 199.263 kb on + strand, within IAI47_00930at 199.264 kb on - strand, within IAI47_00930at 199.264 kb on - strand, within IAI47_00930at 199.264 kb on - strand, within IAI47_00930at 199.264 kb on - strand, within IAI47_00930at 199.264 kb on - strand, within IAI47_00930at 199.264 kb on - strand, within IAI47_00930at 199.264 kb on - strand, within IAI47_00930at 199.264 kb on - strand, within IAI47_00930at 199.264 kb on - strand, within IAI47_00930at 199.404 kb on + strand, within IAI47_00930at 199.404 kb on + strand, within IAI47_00930at 199.405 kb on - strand, within IAI47_00930at 199.405 kb on - strand, within IAI47_00930at 199.544 kb on + strand, within IAI47_00930at 199.544 kb on + strand, within IAI47_00930at 199.583 kb on + strand, within IAI47_00930at 199.583 kb on + strand, within IAI47_00930at 199.584 kb on - strand, within IAI47_00930at 199.584 kb on - strand, within IAI47_00930at 199.607 kb on + strand, within IAI47_00930at 199.607 kb on + strand, within IAI47_00930at 199.607 kb on + strand, within IAI47_00930at 199.607 kb on + strand, within IAI47_00930at 199.608 kb on - strand, within IAI47_00930at 199.608 kb on - strand, within IAI47_00930at 199.608 kb on - strand, within IAI47_00930at 199.643 kb on + strand, within IAI47_00930at 199.662 kb on + strand, within IAI47_00930at 199.662 kb on + strand, within IAI47_00930at 199.662 kb on + strand, within IAI47_00930at 199.662 kb on + strand, within IAI47_00930at 199.663 kb on - strand, within IAI47_00930at 199.674 kb on + strand, within IAI47_00930at 199.674 kb on + strand, within IAI47_00930at 199.674 kb on + strand, within IAI47_00930at 199.675 kb on - strand, within IAI47_00930at 199.710 kb on + strand, within IAI47_00930at 199.711 kb on - strand, within IAI47_00930

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3
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197,590 + IAI47_00920 0.37 -4.9
197,590 + IAI47_00920 0.37 -4.0
197,590 + IAI47_00920 0.37 -1.6
197,591 - IAI47_00920 0.37 -2.0
197,591 - IAI47_00920 0.37 -2.5
197,631 + IAI47_00920 0.40 -0.6
197,745 + IAI47_00920 0.49 -2.6
197,745 + IAI47_00920 0.49 -2.7
197,745 + IAI47_00920 0.49 -4.0
197,745 + IAI47_00920 0.49 -2.2
197,746 - IAI47_00920 0.49 -2.2
197,746 - IAI47_00920 0.49 -3.2
197,746 - IAI47_00920 0.49 -2.2
197,746 - IAI47_00920 0.49 -2.5
197,746 - IAI47_00920 0.49 -1.6
197,746 - IAI47_00920 0.49 -2.0
197,746 - IAI47_00920 0.49 -2.8
197,746 - IAI47_00920 0.49 -3.1
197,762 + IAI47_00920 0.50 -2.5
197,762 + IAI47_00920 0.50 -2.5
197,762 + IAI47_00920 0.50 -4.0
197,762 + IAI47_00920 0.50 -3.0
197,841 + IAI47_00920 0.56 -3.3
197,842 - IAI47_00920 0.56 -2.6
197,842 - IAI47_00920 0.56 -3.1
197,842 - IAI47_00920 0.56 -2.0
197,842 - IAI47_00920 0.56 -3.1
197,874 + IAI47_00920 0.58 -1.6
197,889 + IAI47_00920 0.59 -1.6
197,889 + IAI47_00920 0.59 -3.2
197,889 + IAI47_00920 0.59 -2.6
197,889 + IAI47_00920 0.59 +0.4
197,890 - IAI47_00920 0.59 -3.8
197,890 - IAI47_00920 0.59 -2.8
198,005 + IAI47_00920 0.68 -2.6
198,005 + IAI47_00920 0.68 -3.7
198,005 + IAI47_00920 0.68 -0.6
198,005 + IAI47_00920 0.68 -3.3
198,006 - IAI47_00920 0.68 -3.9
198,006 - IAI47_00920 0.68 -3.1
198,006 - IAI47_00920 0.68 -2.8
198,006 - IAI47_00920 0.68 -2.8
198,006 - IAI47_00920 0.68 -2.5
198,006 - IAI47_00920 0.68 -2.2
198,026 - IAI47_00920 0.69 -3.0
198,026 - IAI47_00920 0.69 -3.6
198,036 + IAI47_00920 0.70 -4.6
198,036 + IAI47_00920 0.70 -4.2
198,036 + IAI47_00920 0.70 -1.6
198,036 + IAI47_00920 0.70 -4.2
198,037 - IAI47_00920 0.70 -1.2
198,037 - IAI47_00920 0.70 -2.2
198,037 - IAI47_00920 0.70 -1.6
198,037 - IAI47_00920 0.70 -3.0
198,037 - IAI47_00920 0.70 -3.5
198,037 - IAI47_00920 0.70 -3.2
198,075 + IAI47_00920 0.73 -2.5
198,075 + IAI47_00920 0.73 -3.3
198,096 + IAI47_00920 0.74 -1.2
198,096 + IAI47_00920 0.74 -3.5
198,096 + IAI47_00920 0.74 -3.3
198,096 + IAI47_00920 0.74 -4.2
198,096 + IAI47_00920 0.74 -2.0
198,096 + IAI47_00920 0.74 -3.6
198,096 + IAI47_00920 0.74 -1.6
198,096 + IAI47_00920 0.74 -2.5
198,096 + IAI47_00920 0.74 -1.6
198,096 + IAI47_00920 0.74 -3.6
198,096 + IAI47_00920 0.74 -0.6
198,096 + IAI47_00920 0.74 -1.6
198,096 + IAI47_00920 0.74 -4.1
198,097 - IAI47_00920 0.74 -3.2
198,097 - IAI47_00920 0.74 -2.2
198,097 - IAI47_00920 0.74 -3.0
198,097 - IAI47_00920 0.74 -2.0
198,097 - IAI47_00920 0.74 -2.8
198,097 - IAI47_00920 0.74 -1.2
198,097 - IAI47_00920 0.74 -5.1
198,097 - IAI47_00920 0.74 -1.6
198,130 - IAI47_00920 0.77 -2.0
198,166 + IAI47_00920 0.79 -1.6
198,167 - IAI47_00920 0.79 -3.6
198,177 + IAI47_00920 0.80 -1.6
198,193 + IAI47_00920 0.81 -2.0
198,193 + IAI47_00920 0.81 -2.2
198,194 - IAI47_00920 0.81 -3.2
198,194 - IAI47_00920 0.81 -0.6
198,234 + IAI47_00920 0.84 -1.6
198,234 + IAI47_00920 0.84 -3.0
198,234 + IAI47_00920 0.84 -3.0
198,234 + IAI47_00920 0.84 -2.6
198,235 - IAI47_00920 0.84 +0.4
198,235 - IAI47_00920 0.84 -2.5
198,275 + IAI47_00920 0.87 -2.0
198,275 + IAI47_00920 0.87 -2.2
198,276 - IAI47_00920 0.87 -2.0
198,276 - IAI47_00920 0.87 -2.6
198,341 - -0.6
198,341 - -2.5
198,378 + -1.2
198,378 + +0.4
198,378 + +0.4
198,378 + +0.4
198,379 - -3.2
198,379 - -1.6
198,379 - -5.3
198,379 - -3.6
198,379 - -3.6
198,379 - -3.6
198,379 - -3.6
198,379 - -2.5
198,379 - -3.6
198,432 + -0.1
198,432 + -1.3
198,433 - -2.6
198,478 + +0.1
198,478 + -1.2
198,478 + -0.2
198,478 + +0.6
198,479 - +0.4
198,479 - -1.2
198,497 + -1.1
198,497 + -0.1
198,497 + +0.2
198,497 + +0.4
198,497 + -0.6
198,497 + +0.4
198,497 + +2.7
198,498 - -0.8
198,510 - -2.5
198,521 + -0.1
198,522 - +1.1
198,571 + -0.6
198,571 + +1.8
198,571 + +0.4
198,571 + +0.4
198,571 + -0.6
198,571 + -0.6
198,571 + +0.9
198,571 + +0.9
198,571 + +0.4
198,572 - +0.7
198,572 - +0.2
198,572 - -2.3
198,572 - -0.1
198,572 - -0.2
198,586 + IAI47_00925 0.11 -0.6
198,587 - IAI47_00925 0.12 -0.4
198,587 - IAI47_00925 0.12 +0.4
198,587 - IAI47_00925 0.12 +0.7
198,587 - IAI47_00925 0.12 -0.2
198,642 + IAI47_00925 0.49 -0.1
198,643 - IAI47_00925 0.50 -0.6
198,711 - -1.0
198,711 - +1.1
198,739 + +1.1
198,739 + +0.4
198,739 + +1.1
198,739 + +0.9
198,771 + -0.6
198,771 + +1.1
198,771 + +0.4
198,772 - +1.4
198,773 + -0.4
198,774 - -0.2
198,774 - +0.7
198,774 - +1.2
198,774 - -0.5
198,774 - -0.2
198,774 - +0.4
198,774 - -0.8
198,774 - +2.4
198,814 + +0.1
198,814 + +0.8
198,815 - -0.4
198,815 - +0.1
198,853 + -1.6
198,854 - -0.3
198,858 + +0.5
198,859 - +0.4
198,892 + +1.9
198,892 + +0.2
198,892 + -0.6
198,892 + -1.5
198,892 + -0.6
198,893 - +0.9
198,893 - +0.9
198,895 + +0.9
198,895 + -0.6
198,895 + -0.2
198,895 + +1.0
198,895 + +1.8
198,895 + -0.6
198,896 - +0.4
198,902 + +0.1
198,902 + +1.1
198,902 + -1.0
198,902 + +0.8
198,903 - -0.6
198,903 - +1.9
198,903 - +1.4
198,903 - +1.6
198,903 - +0.5
198,918 + +1.4
198,918 + +0.1
198,918 + +0.8
198,919 - +1.4
198,919 - -0.4
198,992 - IAI47_00930 0.10 +0.9
198,992 - IAI47_00930 0.10 -1.1
199,008 - IAI47_00930 0.12 +1.2
199,055 + IAI47_00930 0.17 +0.1
199,056 - IAI47_00930 0.17 -0.6
199,056 - IAI47_00930 0.17 -0.1
199,081 + IAI47_00930 0.20 +1.7
199,081 + IAI47_00930 0.20 +0.1
199,103 + IAI47_00930 0.22 -0.6
199,103 + IAI47_00930 0.22 +0.7
199,104 - IAI47_00930 0.23 +0.2
199,178 + IAI47_00930 0.31 -1.5
199,179 - IAI47_00930 0.31 -2.0
199,207 - IAI47_00930 0.34 +1.3
199,210 + IAI47_00930 0.34 +1.1
199,210 + IAI47_00930 0.34 -0.7
199,210 + IAI47_00930 0.34 -1.2
199,211 - IAI47_00930 0.34 +0.1
199,224 - IAI47_00930 0.36 -0.6
199,263 + IAI47_00930 0.40 +1.4
199,263 + IAI47_00930 0.40 +1.6
199,263 + IAI47_00930 0.40 +0.4
199,263 + IAI47_00930 0.40 +1.7
199,263 + IAI47_00930 0.40 -0.6
199,263 + IAI47_00930 0.40 -2.0
199,263 + IAI47_00930 0.40 -1.2
199,263 + IAI47_00930 0.40 -0.7
199,263 + IAI47_00930 0.40 +0.7
199,263 + IAI47_00930 0.40 +0.2
199,263 + IAI47_00930 0.40 +0.0
199,264 - IAI47_00930 0.40 +0.5
199,264 - IAI47_00930 0.40 +0.7
199,264 - IAI47_00930 0.40 -1.6
199,264 - IAI47_00930 0.40 +0.0
199,264 - IAI47_00930 0.40 -0.5
199,264 - IAI47_00930 0.40 -0.3
199,264 - IAI47_00930 0.40 +0.8
199,264 - IAI47_00930 0.40 +0.4
199,264 - IAI47_00930 0.40 +1.1
199,404 + IAI47_00930 0.55 -0.6
199,404 + IAI47_00930 0.55 -1.2
199,405 - IAI47_00930 0.55 -0.2
199,405 - IAI47_00930 0.55 -0.4
199,544 + IAI47_00930 0.70 +0.4
199,544 + IAI47_00930 0.70 -0.3
199,583 + IAI47_00930 0.75 +1.4
199,583 + IAI47_00930 0.75 +1.2
199,584 - IAI47_00930 0.75 +1.3
199,584 - IAI47_00930 0.75 +1.9
199,607 + IAI47_00930 0.77 -1.5
199,607 + IAI47_00930 0.77 +0.8
199,607 + IAI47_00930 0.77 +0.4
199,607 + IAI47_00930 0.77 +0.2
199,608 - IAI47_00930 0.77 +0.1
199,608 - IAI47_00930 0.77 -0.1
199,608 - IAI47_00930 0.77 +0.6
199,643 + IAI47_00930 0.81 -0.6
199,662 + IAI47_00930 0.83 -0.1
199,662 + IAI47_00930 0.83 +0.8
199,662 + IAI47_00930 0.83 -0.2
199,662 + IAI47_00930 0.83 -0.2
199,663 - IAI47_00930 0.83 +0.8
199,674 + IAI47_00930 0.85 +0.2
199,674 + IAI47_00930 0.85 +1.6
199,674 + IAI47_00930 0.85 +0.1
199,675 - IAI47_00930 0.85 -0.2
199,710 + IAI47_00930 0.89 +1.8
199,711 - IAI47_00930 0.89 +1.9

Or see this region's nucleotide sequence