Strain Fitness in Pantoea sp. MT58 around IAI47_00860

Experiment: Ying_Nucleobase14 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00855 and IAI47_00860 are separated by 152 nucleotidesIAI47_00860 and IAI47_00865 are separated by 164 nucleotides IAI47_00855: IAI47_00855 - cell division protein FtsN, at 179,186 to 180,172 _00855 IAI47_00860: IAI47_00860 - DNA-binding transcriptional regulator CytR, at 180,325 to 181,362 _00860 IAI47_00865: IAI47_00865 - primosomal protein N', at 181,527 to 183,722 _00865 Position (kb) 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 179.343 kb on - strand, within IAI47_00855at 179.355 kb on - strand, within IAI47_00855at 179.355 kb on - strand, within IAI47_00855at 179.355 kb on - strand, within IAI47_00855at 179.355 kb on - strand, within IAI47_00855at 179.510 kb on + strand, within IAI47_00855at 179.510 kb on + strand, within IAI47_00855at 179.510 kb on + strand, within IAI47_00855at 179.511 kb on - strand, within IAI47_00855at 179.511 kb on - strand, within IAI47_00855at 179.785 kb on + strand, within IAI47_00855at 179.785 kb on + strand, within IAI47_00855at 179.786 kb on - strand, within IAI47_00855at 179.786 kb on - strand, within IAI47_00855at 179.786 kb on - strand, within IAI47_00855at 179.888 kb on - strand, within IAI47_00855at 180.183 kb on - strandat 180.183 kb on - strandat 180.183 kb on - strandat 180.183 kb on - strandat 180.183 kb on - strandat 180.183 kb on - strandat 180.185 kb on - strandat 180.185 kb on - strandat 180.185 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.255 kb on - strandat 180.259 kb on - strandat 180.300 kb on + strandat 180.301 kb on - strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.320 kb on + strandat 180.321 kb on - strandat 180.321 kb on - strandat 180.321 kb on - strandat 180.355 kb on - strandat 180.418 kb on + strandat 180.418 kb on + strandat 180.418 kb on + strandat 180.419 kb on - strandat 180.419 kb on - strandat 180.419 kb on - strandat 180.419 kb on - strandat 180.454 kb on + strand, within IAI47_00860at 180.454 kb on + strand, within IAI47_00860at 180.455 kb on - strand, within IAI47_00860at 180.509 kb on - strand, within IAI47_00860at 180.509 kb on - strand, within IAI47_00860at 180.509 kb on - strand, within IAI47_00860at 180.509 kb on - strand, within IAI47_00860at 180.597 kb on + strand, within IAI47_00860at 180.597 kb on + strand, within IAI47_00860at 180.597 kb on + strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.598 kb on - strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.600 kb on + strand, within IAI47_00860at 180.601 kb on - strand, within IAI47_00860at 180.601 kb on - strand, within IAI47_00860at 180.601 kb on - strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.699 kb on + strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.700 kb on - strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.701 kb on + strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.702 kb on - strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.746 kb on + strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.747 kb on - strand, within IAI47_00860at 180.755 kb on - strand, within IAI47_00860at 180.796 kb on - strand, within IAI47_00860at 180.810 kb on + strand, within IAI47_00860at 180.810 kb on + strand, within IAI47_00860at 180.810 kb on + strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.811 kb on - strand, within IAI47_00860at 180.818 kb on - strand, within IAI47_00860at 180.818 kb on - strand, within IAI47_00860at 181.014 kb on + strand, within IAI47_00860at 181.014 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.070 kb on + strand, within IAI47_00860at 181.071 kb on - strand, within IAI47_00860at 181.071 kb on - strand, within IAI47_00860at 181.071 kb on - strand, within IAI47_00860at 181.117 kb on - strand, within IAI47_00860at 181.158 kb on + strand, within IAI47_00860at 181.159 kb on - strand, within IAI47_00860at 181.170 kb on + strand, within IAI47_00860at 181.170 kb on + strand, within IAI47_00860at 181.205 kb on + strand, within IAI47_00860at 181.237 kb on - strand, within IAI47_00860at 181.237 kb on - strand, within IAI47_00860at 181.237 kb on - strand, within IAI47_00860at 181.286 kb on - strandat 181.382 kb on - strandat 181.382 kb on - strandat 181.438 kb on - strandat 181.459 kb on + strandat 181.459 kb on + strandat 181.459 kb on + strandat 181.463 kb on + strandat 181.464 kb on - strandat 181.486 kb on + strandat 181.486 kb on + strandat 181.487 kb on - strandat 181.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3
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179,343 - IAI47_00855 0.16 +0.1
179,355 - IAI47_00855 0.17 -0.2
179,355 - IAI47_00855 0.17 +1.8
179,355 - IAI47_00855 0.17 -1.6
179,355 - IAI47_00855 0.17 +0.7
179,510 + IAI47_00855 0.33 +0.4
179,510 + IAI47_00855 0.33 -0.5
179,510 + IAI47_00855 0.33 -0.2
179,511 - IAI47_00855 0.33 -0.4
179,511 - IAI47_00855 0.33 -0.8
179,785 + IAI47_00855 0.61 +0.9
179,785 + IAI47_00855 0.61 +0.4
179,786 - IAI47_00855 0.61 +0.4
179,786 - IAI47_00855 0.61 -0.6
179,786 - IAI47_00855 0.61 -1.2
179,888 - IAI47_00855 0.71 +1.1
180,183 - +1.2
180,183 - -0.1
180,183 - -0.8
180,183 - +0.7
180,183 - -0.2
180,183 - +0.9
180,185 - -0.2
180,185 - +0.4
180,185 - +0.8
180,255 - +0.8
180,255 - +0.4
180,255 - -0.9
180,255 - +2.7
180,255 - +0.4
180,255 - -1.2
180,255 - -1.0
180,259 - -0.4
180,300 + -0.0
180,301 - +0.7
180,320 + +0.6
180,320 + +0.9
180,320 + +0.5
180,320 + +0.8
180,320 + +0.4
180,320 + +0.6
180,320 + -0.3
180,321 - -0.2
180,321 - +0.2
180,321 - +1.5
180,355 - +2.2
180,418 + +4.4
180,418 + +3.0
180,418 + +2.4
180,419 - +1.8
180,419 - +3.7
180,419 - +3.9
180,419 - +2.6
180,454 + IAI47_00860 0.12 +2.4
180,454 + IAI47_00860 0.12 +3.5
180,455 - IAI47_00860 0.13 +3.6
180,509 - IAI47_00860 0.18 +2.4
180,509 - IAI47_00860 0.18 +2.3
180,509 - IAI47_00860 0.18 +3.3
180,509 - IAI47_00860 0.18 +1.9
180,597 + IAI47_00860 0.26 +3.9
180,597 + IAI47_00860 0.26 +2.7
180,597 + IAI47_00860 0.26 +1.8
180,598 - IAI47_00860 0.26 +3.3
180,598 - IAI47_00860 0.26 +2.6
180,598 - IAI47_00860 0.26 +2.7
180,598 - IAI47_00860 0.26 +1.9
180,600 + IAI47_00860 0.26 +1.6
180,600 + IAI47_00860 0.26 +2.1
180,600 + IAI47_00860 0.26 +2.8
180,600 + IAI47_00860 0.26 +2.7
180,600 + IAI47_00860 0.26 +3.1
180,601 - IAI47_00860 0.27 +3.9
180,601 - IAI47_00860 0.27 +2.9
180,601 - IAI47_00860 0.27 +3.0
180,699 + IAI47_00860 0.36 +2.2
180,699 + IAI47_00860 0.36 +2.3
180,699 + IAI47_00860 0.36 +1.3
180,699 + IAI47_00860 0.36 +2.4
180,699 + IAI47_00860 0.36 +1.9
180,699 + IAI47_00860 0.36 +2.0
180,699 + IAI47_00860 0.36 +4.4
180,700 - IAI47_00860 0.36 +2.6
180,700 - IAI47_00860 0.36 +2.6
180,700 - IAI47_00860 0.36 +3.2
180,700 - IAI47_00860 0.36 +3.3
180,700 - IAI47_00860 0.36 +2.3
180,700 - IAI47_00860 0.36 +2.4
180,701 + IAI47_00860 0.36 +3.4
180,701 + IAI47_00860 0.36 +2.0
180,701 + IAI47_00860 0.36 +2.3
180,701 + IAI47_00860 0.36 +2.9
180,701 + IAI47_00860 0.36 +5.1
180,701 + IAI47_00860 0.36 +3.9
180,701 + IAI47_00860 0.36 +2.2
180,701 + IAI47_00860 0.36 +1.6
180,701 + IAI47_00860 0.36 +2.4
180,701 + IAI47_00860 0.36 +2.1
180,701 + IAI47_00860 0.36 +1.6
180,701 + IAI47_00860 0.36 +1.8
180,701 + IAI47_00860 0.36 +2.1
180,701 + IAI47_00860 0.36 +1.9
180,701 + IAI47_00860 0.36 +3.1
180,701 + IAI47_00860 0.36 +2.9
180,701 + IAI47_00860 0.36 +2.4
180,701 + IAI47_00860 0.36 +3.0
180,702 - IAI47_00860 0.36 +2.0
180,702 - IAI47_00860 0.36 +2.6
180,702 - IAI47_00860 0.36 +3.1
180,702 - IAI47_00860 0.36 +2.4
180,702 - IAI47_00860 0.36 +3.1
180,702 - IAI47_00860 0.36 +2.6
180,702 - IAI47_00860 0.36 +2.6
180,702 - IAI47_00860 0.36 +2.6
180,702 - IAI47_00860 0.36 +2.9
180,702 - IAI47_00860 0.36 +2.6
180,702 - IAI47_00860 0.36 +4.6
180,702 - IAI47_00860 0.36 +2.5
180,702 - IAI47_00860 0.36 +2.2
180,702 - IAI47_00860 0.36 +2.6
180,702 - IAI47_00860 0.36 +1.8
180,702 - IAI47_00860 0.36 +2.9
180,702 - IAI47_00860 0.36 +2.8
180,702 - IAI47_00860 0.36 +3.6
180,702 - IAI47_00860 0.36 +1.8
180,702 - IAI47_00860 0.36 +3.7
180,702 - IAI47_00860 0.36 +1.9
180,702 - IAI47_00860 0.36 +3.2
180,702 - IAI47_00860 0.36 +1.7
180,702 - IAI47_00860 0.36 +2.3
180,746 + IAI47_00860 0.41 +2.7
180,746 + IAI47_00860 0.41 +2.8
180,746 + IAI47_00860 0.41 +2.6
180,746 + IAI47_00860 0.41 +2.5
180,746 + IAI47_00860 0.41 +2.5
180,746 + IAI47_00860 0.41 +2.5
180,747 - IAI47_00860 0.41 +3.6
180,747 - IAI47_00860 0.41 +2.7
180,747 - IAI47_00860 0.41 +1.9
180,747 - IAI47_00860 0.41 +3.6
180,747 - IAI47_00860 0.41 +2.1
180,747 - IAI47_00860 0.41 +3.4
180,747 - IAI47_00860 0.41 +1.3
180,747 - IAI47_00860 0.41 +2.7
180,755 - IAI47_00860 0.41 +2.4
180,796 - IAI47_00860 0.45 +2.6
180,810 + IAI47_00860 0.47 +1.7
180,810 + IAI47_00860 0.47 +2.4
180,810 + IAI47_00860 0.47 +1.9
180,811 - IAI47_00860 0.47 +2.0
180,811 - IAI47_00860 0.47 +3.0
180,811 - IAI47_00860 0.47 +3.4
180,811 - IAI47_00860 0.47 +1.9
180,811 - IAI47_00860 0.47 +2.9
180,818 - IAI47_00860 0.47 +1.7
180,818 - IAI47_00860 0.47 +1.8
181,014 + IAI47_00860 0.66 +2.2
181,014 + IAI47_00860 0.66 +2.6
181,070 + IAI47_00860 0.72 +1.4
181,070 + IAI47_00860 0.72 +2.4
181,070 + IAI47_00860 0.72 +1.3
181,070 + IAI47_00860 0.72 +2.3
181,070 + IAI47_00860 0.72 +2.0
181,070 + IAI47_00860 0.72 +2.3
181,071 - IAI47_00860 0.72 +2.3
181,071 - IAI47_00860 0.72 +2.4
181,071 - IAI47_00860 0.72 +3.7
181,117 - IAI47_00860 0.76 +3.7
181,158 + IAI47_00860 0.80 +2.4
181,159 - IAI47_00860 0.80 +2.0
181,170 + IAI47_00860 0.81 +1.5
181,170 + IAI47_00860 0.81 +2.8
181,205 + IAI47_00860 0.85 +3.2
181,237 - IAI47_00860 0.88 +2.9
181,237 - IAI47_00860 0.88 +1.5
181,237 - IAI47_00860 0.88 +2.9
181,286 - +1.6
181,382 - -0.8
181,382 - +0.2
181,438 - -0.6
181,459 + +1.7
181,459 + +2.5
181,459 + +1.4
181,463 + +2.0
181,464 - -1.1
181,486 + +1.5
181,486 + +3.7
181,487 - -2.7
181,487 - +1.1

Or see this region's nucleotide sequence