Strain Fitness in Pantoea sp. MT58 around IAI47_00800

Experiment: Ying_Nucleobase14 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00790 and IAI47_00795 are separated by 28 nucleotidesIAI47_00795 and IAI47_00800 are separated by 120 nucleotidesIAI47_00800 and IAI47_00805 are separated by 98 nucleotidesIAI47_00805 and IAI47_00810 overlap by 10 nucleotides IAI47_00790: IAI47_00790 - CDP-diacylglycerol diphosphatase, at 167,363 to 168,136 _00790 IAI47_00795: IAI47_00795 - triose-phosphate isomerase, at 168,165 to 168,932 _00795 IAI47_00800: IAI47_00800 - YiiQ family protein, at 169,053 to 169,643 _00800 IAI47_00805: IAI47_00805 - DUF805 domain-containing protein, at 169,742 to 170,176 _00805 IAI47_00810: IAI47_00810 - ferredoxin--NADP(+) reductase, at 170,167 to 170,913 _00810 Position (kb) 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 168.120 kb on + strandat 168.134 kb on + strandat 168.134 kb on + strandat 168.159 kb on + strandat 168.160 kb on - strandat 168.160 kb on - strandat 168.166 kb on + strandat 168.955 kb on - strandat 168.955 kb on - strandat 168.955 kb on - strandat 168.955 kb on - strandat 169.000 kb on - strandat 169.000 kb on - strandat 169.000 kb on - strandat 169.000 kb on - strandat 169.001 kb on + strandat 169.001 kb on + strandat 169.001 kb on + strandat 169.002 kb on - strandat 169.002 kb on - strandat 169.002 kb on - strandat 169.014 kb on + strandat 169.159 kb on + strand, within IAI47_00800at 169.160 kb on - strand, within IAI47_00800at 169.160 kb on - strand, within IAI47_00800at 169.185 kb on + strand, within IAI47_00800at 169.185 kb on + strand, within IAI47_00800at 169.185 kb on + strand, within IAI47_00800at 169.186 kb on - strand, within IAI47_00800at 169.186 kb on - strand, within IAI47_00800at 169.221 kb on + strand, within IAI47_00800at 169.230 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.258 kb on + strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.259 kb on - strand, within IAI47_00800at 169.362 kb on - strand, within IAI47_00800at 169.369 kb on + strand, within IAI47_00800at 169.369 kb on + strand, within IAI47_00800at 169.370 kb on - strand, within IAI47_00800at 169.370 kb on - strand, within IAI47_00800at 169.370 kb on - strand, within IAI47_00800at 169.370 kb on - strand, within IAI47_00800at 169.427 kb on + strand, within IAI47_00800at 169.427 kb on + strand, within IAI47_00800at 169.428 kb on - strand, within IAI47_00800at 169.475 kb on + strand, within IAI47_00800at 169.475 kb on + strand, within IAI47_00800at 169.475 kb on + strand, within IAI47_00800at 169.477 kb on + strand, within IAI47_00800at 169.477 kb on + strand, within IAI47_00800at 169.478 kb on - strand, within IAI47_00800at 169.478 kb on - strand, within IAI47_00800at 169.505 kb on + strand, within IAI47_00800at 169.505 kb on + strand, within IAI47_00800at 169.505 kb on + strand, within IAI47_00800at 169.505 kb on + strand, within IAI47_00800at 169.506 kb on - strand, within IAI47_00800at 169.506 kb on - strand, within IAI47_00800at 169.506 kb on - strand, within IAI47_00800at 169.506 kb on - strand, within IAI47_00800at 169.534 kb on + strand, within IAI47_00800at 169.535 kb on - strand, within IAI47_00800at 169.615 kb on - strandat 169.679 kb on + strandat 169.736 kb on + strandat 169.736 kb on + strandat 169.736 kb on + strandat 169.737 kb on - strandat 169.737 kb on - strandat 169.737 kb on - strandat 169.737 kb on - strandat 169.737 kb on - strandat 169.749 kb on + strandat 169.749 kb on + strandat 169.750 kb on - strandat 169.750 kb on - strandat 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.839 kb on + strand, within IAI47_00805at 169.840 kb on - strand, within IAI47_00805at 169.840 kb on - strand, within IAI47_00805at 169.840 kb on - strand, within IAI47_00805at 169.840 kb on - strand, within IAI47_00805at 169.840 kb on - strand, within IAI47_00805at 169.843 kb on + strand, within IAI47_00805at 169.844 kb on - strand, within IAI47_00805at 169.844 kb on - strand, within IAI47_00805at 169.870 kb on + strand, within IAI47_00805at 169.929 kb on + strand, within IAI47_00805at 169.929 kb on + strand, within IAI47_00805at 169.929 kb on + strand, within IAI47_00805at 169.929 kb on + strand, within IAI47_00805at 169.930 kb on - strand, within IAI47_00805at 169.930 kb on - strand, within IAI47_00805at 169.930 kb on - strand, within IAI47_00805at 169.930 kb on - strand, within IAI47_00805at 169.948 kb on + strand, within IAI47_00805at 169.948 kb on + strand, within IAI47_00805at 169.948 kb on + strand, within IAI47_00805at 169.949 kb on - strand, within IAI47_00805at 169.949 kb on - strand, within IAI47_00805at 169.961 kb on + strand, within IAI47_00805at 169.980 kb on + strand, within IAI47_00805at 170.067 kb on + strand, within IAI47_00805at 170.067 kb on + strand, within IAI47_00805at 170.068 kb on - strand, within IAI47_00805at 170.068 kb on - strand, within IAI47_00805at 170.131 kb on + strand, within IAI47_00805at 170.174 kb on + strandat 170.175 kb on - strandat 170.175 kb on - strandat 170.190 kb on + strandat 170.191 kb on - strandat 170.217 kb on + strandat 170.217 kb on + strandat 170.242 kb on + strand, within IAI47_00810at 170.242 kb on + strand, within IAI47_00810at 170.242 kb on + strand, within IAI47_00810at 170.243 kb on - strand, within IAI47_00810at 170.315 kb on - strand, within IAI47_00810at 170.481 kb on - strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.544 kb on + strand, within IAI47_00810at 170.545 kb on - strand, within IAI47_00810at 170.545 kb on - strand, within IAI47_00810at 170.545 kb on - strand, within IAI47_00810at 170.545 kb on - strand, within IAI47_00810at 170.545 kb on - strand, within IAI47_00810at 170.545 kb on - strand, within IAI47_00810at 170.545 kb on - strand, within IAI47_00810at 170.545 kb on - strand, within IAI47_00810at 170.552 kb on + strand, within IAI47_00810at 170.552 kb on + strand, within IAI47_00810at 170.563 kb on - strand, within IAI47_00810at 170.587 kb on + strand, within IAI47_00810at 170.587 kb on + strand, within IAI47_00810at 170.587 kb on + strand, within IAI47_00810at 170.587 kb on + strand, within IAI47_00810at 170.588 kb on - strand, within IAI47_00810

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3
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168,120 + -0.1
168,134 + -0.2
168,134 + -0.2
168,159 + -0.4
168,160 - +1.4
168,160 - -1.6
168,166 + +1.8
168,955 - +0.2
168,955 - -1.0
168,955 - +0.4
168,955 - -0.4
169,000 - +0.0
169,000 - -1.8
169,000 - +0.2
169,000 - +0.2
169,001 + -1.1
169,001 + -0.0
169,001 + -0.8
169,002 - -1.1
169,002 - -0.3
169,002 - -1.2
169,014 + -1.8
169,159 + IAI47_00800 0.18 -0.4
169,160 - IAI47_00800 0.18 -1.1
169,160 - IAI47_00800 0.18 +2.2
169,185 + IAI47_00800 0.22 +0.2
169,185 + IAI47_00800 0.22 +0.5
169,185 + IAI47_00800 0.22 -0.4
169,186 - IAI47_00800 0.23 -0.6
169,186 - IAI47_00800 0.23 +0.0
169,221 + IAI47_00800 0.28 +1.4
169,230 + IAI47_00800 0.30 -1.2
169,258 + IAI47_00800 0.35 -0.1
169,258 + IAI47_00800 0.35 -0.6
169,258 + IAI47_00800 0.35 +0.4
169,258 + IAI47_00800 0.35 -0.9
169,258 + IAI47_00800 0.35 -0.4
169,258 + IAI47_00800 0.35 +0.0
169,258 + IAI47_00800 0.35 +0.7
169,258 + IAI47_00800 0.35 -0.1
169,258 + IAI47_00800 0.35 +0.4
169,258 + IAI47_00800 0.35 +1.4
169,258 + IAI47_00800 0.35 +0.1
169,259 - IAI47_00800 0.35 +0.4
169,259 - IAI47_00800 0.35 +0.4
169,259 - IAI47_00800 0.35 +0.2
169,259 - IAI47_00800 0.35 +0.9
169,259 - IAI47_00800 0.35 -1.2
169,259 - IAI47_00800 0.35 +0.4
169,259 - IAI47_00800 0.35 -0.6
169,259 - IAI47_00800 0.35 -0.2
169,362 - IAI47_00800 0.52 -1.0
169,369 + IAI47_00800 0.53 +0.6
169,369 + IAI47_00800 0.53 +0.4
169,370 - IAI47_00800 0.54 +0.9
169,370 - IAI47_00800 0.54 -0.0
169,370 - IAI47_00800 0.54 -1.6
169,370 - IAI47_00800 0.54 -1.1
169,427 + IAI47_00800 0.63 -1.4
169,427 + IAI47_00800 0.63 -0.3
169,428 - IAI47_00800 0.63 -1.2
169,475 + IAI47_00800 0.71 +0.6
169,475 + IAI47_00800 0.71 +0.4
169,475 + IAI47_00800 0.71 +0.1
169,477 + IAI47_00800 0.72 +0.4
169,477 + IAI47_00800 0.72 +1.5
169,478 - IAI47_00800 0.72 +0.4
169,478 - IAI47_00800 0.72 -0.8
169,505 + IAI47_00800 0.76 +0.4
169,505 + IAI47_00800 0.76 -1.3
169,505 + IAI47_00800 0.76 -0.0
169,505 + IAI47_00800 0.76 +0.1
169,506 - IAI47_00800 0.77 -0.6
169,506 - IAI47_00800 0.77 +0.5
169,506 - IAI47_00800 0.77 +1.7
169,506 - IAI47_00800 0.77 -1.1
169,534 + IAI47_00800 0.81 -0.6
169,535 - IAI47_00800 0.82 -0.8
169,615 - +0.5
169,679 + -1.0
169,736 + -0.1
169,736 + +0.4
169,736 + -1.5
169,737 - -2.6
169,737 - +0.0
169,737 - -1.8
169,737 - +1.5
169,737 - -0.6
169,749 + +1.0
169,749 + -1.3
169,750 - +1.4
169,750 - +0.4
169,839 + IAI47_00805 0.22 -1.6
169,839 + IAI47_00805 0.22 +1.0
169,839 + IAI47_00805 0.22 -1.2
169,839 + IAI47_00805 0.22 +0.9
169,839 + IAI47_00805 0.22 -0.1
169,839 + IAI47_00805 0.22 +0.5
169,839 + IAI47_00805 0.22 -0.3
169,839 + IAI47_00805 0.22 +0.4
169,839 + IAI47_00805 0.22 -0.4
169,839 + IAI47_00805 0.22 +0.4
169,839 + IAI47_00805 0.22 -0.2
169,840 - IAI47_00805 0.23 +0.0
169,840 - IAI47_00805 0.23 +0.7
169,840 - IAI47_00805 0.23 -1.1
169,840 - IAI47_00805 0.23 +1.2
169,840 - IAI47_00805 0.23 +1.4
169,843 + IAI47_00805 0.23 +1.4
169,844 - IAI47_00805 0.23 +2.7
169,844 - IAI47_00805 0.23 -0.0
169,870 + IAI47_00805 0.29 +0.1
169,929 + IAI47_00805 0.43 +1.6
169,929 + IAI47_00805 0.43 -1.6
169,929 + IAI47_00805 0.43 +0.2
169,929 + IAI47_00805 0.43 +0.7
169,930 - IAI47_00805 0.43 -2.2
169,930 - IAI47_00805 0.43 -1.8
169,930 - IAI47_00805 0.43 +1.1
169,930 - IAI47_00805 0.43 -1.6
169,948 + IAI47_00805 0.47 -0.4
169,948 + IAI47_00805 0.47 +1.5
169,948 + IAI47_00805 0.47 -0.5
169,949 - IAI47_00805 0.48 +1.1
169,949 - IAI47_00805 0.48 -0.4
169,961 + IAI47_00805 0.50 +0.0
169,980 + IAI47_00805 0.55 +0.8
170,067 + IAI47_00805 0.75 +0.9
170,067 + IAI47_00805 0.75 +0.2
170,068 - IAI47_00805 0.75 -0.9
170,068 - IAI47_00805 0.75 +0.7
170,131 + IAI47_00805 0.89 +0.2
170,174 + -1.2
170,175 - -1.8
170,175 - -1.0
170,190 + -1.2
170,191 - -1.8
170,217 + -1.0
170,217 + -1.0
170,242 + IAI47_00810 0.10 +0.1
170,242 + IAI47_00810 0.10 -1.6
170,242 + IAI47_00810 0.10 -2.2
170,243 - IAI47_00810 0.10 -2.8
170,315 - IAI47_00810 0.20 -1.2
170,481 - IAI47_00810 0.42 -3.7
170,544 + IAI47_00810 0.50 -1.4
170,544 + IAI47_00810 0.50 -2.1
170,544 + IAI47_00810 0.50 -1.2
170,544 + IAI47_00810 0.50 -3.0
170,544 + IAI47_00810 0.50 -2.6
170,544 + IAI47_00810 0.50 +0.0
170,544 + IAI47_00810 0.50 -2.4
170,544 + IAI47_00810 0.50 +0.8
170,544 + IAI47_00810 0.50 +0.1
170,544 + IAI47_00810 0.50 -1.2
170,544 + IAI47_00810 0.50 -3.0
170,544 + IAI47_00810 0.50 -1.6
170,544 + IAI47_00810 0.50 -1.0
170,544 + IAI47_00810 0.50 -0.6
170,544 + IAI47_00810 0.50 -1.0
170,544 + IAI47_00810 0.50 -1.2
170,545 - IAI47_00810 0.51 -2.2
170,545 - IAI47_00810 0.51 +0.4
170,545 - IAI47_00810 0.51 -2.7
170,545 - IAI47_00810 0.51 -1.5
170,545 - IAI47_00810 0.51 -0.2
170,545 - IAI47_00810 0.51 -2.9
170,545 - IAI47_00810 0.51 +0.4
170,545 - IAI47_00810 0.51 -0.2
170,552 + IAI47_00810 0.52 -1.0
170,552 + IAI47_00810 0.52 -2.3
170,563 - IAI47_00810 0.53 -1.0
170,587 + IAI47_00810 0.56 -0.6
170,587 + IAI47_00810 0.56 -1.1
170,587 + IAI47_00810 0.56 +0.4
170,587 + IAI47_00810 0.56 -1.2
170,588 - IAI47_00810 0.56 -0.1

Or see this region's nucleotide sequence