Strain Fitness in Pantoea sp. MT58 around IAI47_00510

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
115,069	+		IAI47_00500	0.90	-0.1
115,069	+		IAI47_00500	0.90	-1.0
115,069	+		IAI47_00500	0.90	+1.6
115,070	-		IAI47_00500	0.90	-2.8
115,094	+				-0.7
115,094	+				+0.4
115,094	+				+0.4
115,094	+				+2.4
115,094	+				+0.9
115,095	-				-0.1
115,095	-				-0.6
115,095	-				-0.4
115,095	-				-0.6
115,095	-				-1.6
115,095	-				+0.7
115,095	-				+0.4
115,108	+				-1.8
115,129	+				+0.4
115,129	+				-0.5
115,129	+				-0.2
115,129	+				+0.8
115,129	+				+0.4
115,130	-				-0.6
115,130	-				+0.1
115,130	-				+0.6
115,130	-				+1.6
115,130	-				-0.0
115,130	-				-1.8
115,130	-				+0.4
115,130	-				-1.2
115,134	+				-0.2
115,134	+				+0.4
115,134	+				-0.1
115,134	+				+1.4
115,134	+				+0.4
115,134	+				+0.8
115,134	+				-0.6
115,134	+				+0.4
115,134	+				+1.9
115,134	+				-0.0
115,134	+				+0.4
115,134	+				-0.6
115,134	+				-0.6
115,135	-				-0.6
115,135	-				-0.1
115,135	-				+1.4
115,135	-				+0.4
115,135	-				+0.0
115,135	-				-0.6
115,135	-				-0.0
115,135	-				+1.9
115,135	-				-0.6
115,135	-				-1.1
115,135	-				+0.4
115,135	-				+0.8
115,135	-				+0.1
115,135	-				+0.2
115,135	-				-0.6
115,155	+				-0.9
115,155	+				-1.0
115,249	+				+1.7
115,249	+				-0.0
115,249	+				-0.0
115,249	+				-0.2
115,250	-				-2.6
115,250	-				+0.8
115,250	-				-1.2
115,293	+				-1.4
115,369	+		IAI47_00505	0.12	+0.9
115,369	+		IAI47_00505	0.12	-0.4
115,369	+		IAI47_00505	0.12	-0.4
115,369	+		IAI47_00505	0.12	+0.4
115,370	-		IAI47_00505	0.13	+0.7
115,457	+		IAI47_00505	0.25	+0.1
115,469	+		IAI47_00505	0.27	+0.8
115,469	+		IAI47_00505	0.27	-1.4
115,469	+		IAI47_00505	0.27	-0.9
115,469	+		IAI47_00505	0.27	-0.6
115,470	-		IAI47_00505	0.27	+0.4
115,505	+		IAI47_00505	0.32	-0.6
115,505	+		IAI47_00505	0.32	-0.6
115,505	+		IAI47_00505	0.32	+0.1
115,506	-		IAI47_00505	0.32	-0.2
115,506	-		IAI47_00505	0.32	+0.4
115,512	+		IAI47_00505	0.33	+0.1
115,513	-		IAI47_00505	0.33	-2.2
115,552	-		IAI47_00505	0.39	+1.4
115,650	+		IAI47_00505	0.53	-0.9
115,650	+		IAI47_00505	0.53	-2.4
115,650	+		IAI47_00505	0.53	-0.6
115,650	+		IAI47_00505	0.53	-1.2
115,650	+		IAI47_00505	0.53	-0.4
115,699	+		IAI47_00505	0.60	-0.4
115,699	+		IAI47_00505	0.60	+0.4
115,700	-		IAI47_00505	0.60	+0.7
115,732	+		IAI47_00505	0.64	-0.9
115,732	+		IAI47_00505	0.64	-0.2
115,732	+		IAI47_00505	0.64	-0.6
115,896	+		IAI47_00505	0.88	+0.4
115,896	+		IAI47_00505	0.88	-0.2
115,897	-		IAI47_00505	0.88	-1.9
115,897	-		IAI47_00505	0.88	+0.0
115,897	-		IAI47_00505	0.88	-1.0
115,984	+				-1.6
115,984	+				+1.8
115,984	+				-0.8
115,984	+				+0.9
115,984	+				-0.6
115,984	+				-1.6
115,984	+				-1.6
115,985	-				-0.4
115,985	-				+0.7
115,985	-				-0.5
115,985	-				+0.2
115,985	-				-0.7
115,988	+				-0.6
115,989	-				+0.9
115,989	-				+0.5
115,989	-				+1.4
115,989	-				+0.1
116,042	+				-2.0
116,043	-				-2.4
116,043	-				-0.1
116,043	-				-4.0
116,082	-				-1.1
116,092	+				+0.0
116,092	+				-0.1
116,092	+				-1.2
116,093	-				+0.8
116,168	+				-1.2
116,189	+				-0.6
116,190	-				-1.1
116,238	-		IAI47_00510	0.12	-0.4
116,388	-		IAI47_00510	0.19	-2.0
116,388	-		IAI47_00510	0.19	+0.4
116,388	-		IAI47_00510	0.19	-2.0
116,388	-		IAI47_00510	0.19	-1.7
116,388	-		IAI47_00510	0.19	-1.4
116,388	-		IAI47_00510	0.19	+0.4
116,411	+		IAI47_00510	0.20	-1.2
116,412	-		IAI47_00510	0.20	-0.5
116,926	+		IAI47_00510	0.45	-1.6
118,088	-				-2.2
118,088	-				-2.6
118,088	-				-1.6
118,197	-		IAI47_00515	0.31	-0.2
118,250	-		IAI47_00515	0.50	-1.2
118,250	-		IAI47_00515	0.50	-0.6
118,250	-		IAI47_00515	0.50	-1.6
118,256	-		IAI47_00515	0.52	-0.2
118,388	-				-3.3
118,388	-				-2.2
118,388	-				-2.0
118,388	-				-2.0
118,388	-				-1.6
118,388	-				-1.6
118,388	-				-1.0
118,388	-				-2.4
118,397	-				-1.6
118,397	-				+0.4
118,397	-				-1.4
118,429	-				+0.4
118,429	-				-0.6
118,429	-				-1.0
118,429	-				-0.5
118,440	-				+0.4
118,440	-				+0.4