Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20775 and IAI47_20780 are separated by 89 nucleotides IAI47_20780 and IAI47_20785 are separated by 60 nucleotides IAI47_20785 and IAI47_20790 are separated by 158 nucleotides
IAI47_20775: IAI47_20775 - hydroxyacid dehydrogenase, at 400,189 to 401,139
_20775
IAI47_20780: IAI47_20780 - cupin domain-containing protein, at 401,229 to 401,576
_20780
IAI47_20785: IAI47_20785 - GNAT family N-acetyltransferase, at 401,637 to 402,125
_20785
IAI47_20790: IAI47_20790 - dienelactone hydrolase, at 402,284 to 403,453
_20790
Position (kb) 401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 400.276 kb on + strand at 400.276 kb on + strand at 400.276 kb on + strand at 400.276 kb on + strand at 400.307 kb on + strand, within IAI47_20775 at 400.307 kb on + strand, within IAI47_20775 at 400.359 kb on + strand, within IAI47_20775 at 400.360 kb on - strand, within IAI47_20775 at 400.360 kb on - strand, within IAI47_20775 at 400.434 kb on + strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.465 kb on - strand, within IAI47_20775 at 400.515 kb on + strand, within IAI47_20775 at 400.516 kb on - strand, within IAI47_20775 at 400.553 kb on + strand, within IAI47_20775 at 400.554 kb on - strand, within IAI47_20775 at 400.554 kb on - strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.582 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.591 kb on - strand, within IAI47_20775 at 400.602 kb on + strand, within IAI47_20775 at 400.602 kb on + strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.708 kb on + strand, within IAI47_20775 at 400.708 kb on + strand, within IAI47_20775 at 400.709 kb on - strand, within IAI47_20775 at 400.855 kb on - strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.016 kb on - strand, within IAI47_20775 at 401.016 kb on - strand, within IAI47_20775 at 401.049 kb on + strand at 401.050 kb on - strand at 401.050 kb on - strand at 401.050 kb on - strand at 401.056 kb on + strand at 401.056 kb on + strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.086 kb on - strand at 401.086 kb on - strand at 401.115 kb on + strand at 401.116 kb on - strand at 401.137 kb on + strand at 401.138 kb on - strand at 401.157 kb on + strand at 401.158 kb on - strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.181 kb on - strand at 401.181 kb on - strand at 401.203 kb on + strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.204 kb on - strand at 401.213 kb on + strand at 401.214 kb on - strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.256 kb on + strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.257 kb on - strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.260 kb on + strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.261 kb on - strand at 401.286 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.389 kb on + strand, within IAI47_20780 at 401.390 kb on - strand, within IAI47_20780 at 401.390 kb on - strand, within IAI47_20780 at 401.390 kb on - strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.405 kb on + strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.406 kb on - strand, within IAI47_20780 at 401.602 kb on + strand at 401.602 kb on + strand at 401.602 kb on + strand at 401.603 kb on - strand at 401.648 kb on + strand at 401.683 kb on + strand at 401.683 kb on + strand at 401.683 kb on + strand at 401.684 kb on - strand at 401.684 kb on - strand at 401.684 kb on - strand at 401.789 kb on + strand, within IAI47_20785 at 401.790 kb on - strand, within IAI47_20785 at 401.790 kb on - strand, within IAI47_20785 at 401.807 kb on + strand, within IAI47_20785 at 401.808 kb on - strand, within IAI47_20785 at 401.808 kb on - strand, within IAI47_20785 at 401.825 kb on + strand, within IAI47_20785 at 401.826 kb on - strand, within IAI47_20785 at 401.826 kb on - strand, within IAI47_20785 at 401.826 kb on - strand, within IAI47_20785 at 401.888 kb on + strand, within IAI47_20785 at 401.888 kb on + strand, within IAI47_20785 at 401.889 kb on - strand, within IAI47_20785 at 401.890 kb on + strand, within IAI47_20785 at 401.906 kb on - strand, within IAI47_20785 at 401.913 kb on - strand, within IAI47_20785 at 401.913 kb on - strand, within IAI47_20785 at 401.997 kb on - strand, within IAI47_20785 at 401.997 kb on - strand, within IAI47_20785 at 402.004 kb on + strand, within IAI47_20785 at 402.005 kb on - strand, within IAI47_20785 at 402.029 kb on + strand, within IAI47_20785 at 402.030 kb on - strand, within IAI47_20785 at 402.039 kb on - strand, within IAI47_20785 at 402.043 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.046 kb on + strand, within IAI47_20785 at 402.047 kb on - strand, within IAI47_20785 at 402.047 kb on - strand, within IAI47_20785 at 402.049 kb on + strand, within IAI47_20785 at 402.049 kb on + strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.050 kb on - strand, within IAI47_20785 at 402.117 kb on + strand at 402.117 kb on + strand at 402.118 kb on - strand at 402.129 kb on + strand at 402.129 kb on + strand at 402.145 kb on - strand at 402.147 kb on + strand at 402.148 kb on - strand at 402.148 kb on - strand at 402.148 kb on - strand at 402.176 kb on + strand at 402.177 kb on - strand at 402.179 kb on + strand at 402.179 kb on + strand at 402.180 kb on - strand at 402.180 kb on - strand at 402.180 kb on - strand at 402.186 kb on + strand at 402.186 kb on + strand at 402.209 kb on + strand at 402.210 kb on - strand at 402.218 kb on + strand at 402.228 kb on + strand at 402.229 kb on - strand at 402.229 kb on - strand at 402.264 kb on + strand at 402.277 kb on - strand at 402.282 kb on + strand at 402.301 kb on + strand at 402.301 kb on + strand at 402.302 kb on - strand at 402.302 kb on - strand at 402.312 kb on + strand at 402.313 kb on - strand at 402.313 kb on - strand at 402.361 kb on + strand at 402.361 kb on + strand at 402.362 kb on - strand at 402.362 kb on - strand at 402.403 kb on - strand, within IAI47_20790 at 402.403 kb on - strand, within IAI47_20790 at 402.451 kb on - strand, within IAI47_20790 at 402.468 kb on + strand, within IAI47_20790 at 402.468 kb on + strand, within IAI47_20790 at 402.482 kb on + strand, within IAI47_20790 at 402.482 kb on + strand, within IAI47_20790 at 402.483 kb on - strand, within IAI47_20790 at 402.555 kb on + strand, within IAI47_20790 at 402.555 kb on + strand, within IAI47_20790
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 400,276 + +0.4 400,276 + +0.2 400,276 + -0.5 400,276 + +0.2 400,307 + IAI47_20775 0.12 -0.1 400,307 + IAI47_20775 0.12 +0.2 400,359 + IAI47_20775 0.18 -1.0 400,360 - IAI47_20775 0.18 +1.2 400,360 - IAI47_20775 0.18 +0.0 400,434 + IAI47_20775 0.26 +1.0 400,435 - IAI47_20775 0.26 +1.8 400,435 - IAI47_20775 0.26 -0.7 400,435 - IAI47_20775 0.26 +0.9 400,435 - IAI47_20775 0.26 +0.2 400,465 - IAI47_20775 0.29 -1.8 400,515 + IAI47_20775 0.34 -1.6 400,516 - IAI47_20775 0.34 +0.4 400,553 + IAI47_20775 0.38 -1.4 400,554 - IAI47_20775 0.38 +1.2 400,554 - IAI47_20775 0.38 +2.2 400,569 + IAI47_20775 0.40 +0.0 400,569 + IAI47_20775 0.40 +0.6 400,569 + IAI47_20775 0.40 +2.2 400,582 + IAI47_20775 0.41 +0.7 400,590 + IAI47_20775 0.42 +0.8 400,590 + IAI47_20775 0.42 +0.7 400,590 + IAI47_20775 0.42 -0.6 400,591 - IAI47_20775 0.42 +0.0 400,602 + IAI47_20775 0.43 -1.0 400,602 + IAI47_20775 0.43 +0.0 400,603 - IAI47_20775 0.44 -1.2 400,603 - IAI47_20775 0.44 +0.4 400,603 - IAI47_20775 0.44 -0.2 400,708 + IAI47_20775 0.55 +0.4 400,708 + IAI47_20775 0.55 +0.0 400,709 - IAI47_20775 0.55 -1.0 400,855 - IAI47_20775 0.70 -0.4 400,992 + IAI47_20775 0.84 +0.4 400,992 + IAI47_20775 0.84 +0.8 400,992 + IAI47_20775 0.84 -0.4 400,993 - IAI47_20775 0.85 +0.0 400,993 - IAI47_20775 0.85 -0.6 400,993 - IAI47_20775 0.85 +0.6 400,993 - IAI47_20775 0.85 +0.0 400,993 - IAI47_20775 0.85 +0.6 400,993 - IAI47_20775 0.85 -0.8 401,015 + IAI47_20775 0.87 -0.7 401,015 + IAI47_20775 0.87 -1.4 401,015 + IAI47_20775 0.87 +0.2 401,015 + IAI47_20775 0.87 -0.9 401,015 + IAI47_20775 0.87 -0.7 401,016 - IAI47_20775 0.87 +3.0 401,016 - IAI47_20775 0.87 -3.5 401,049 + +0.0 401,050 - -2.5 401,050 - +1.0 401,050 - +0.3 401,056 + -1.7 401,056 + +0.4 401,057 - +0.5 401,057 - +2.6 401,057 - -0.6 401,057 - +0.9 401,085 + +1.0 401,085 + -1.0 401,085 + +0.3 401,085 + +0.2 401,086 - -0.4 401,086 - +0.6 401,115 + +0.1 401,116 - -0.2 401,137 + +0.3 401,138 - -0.3 401,157 + -0.3 401,158 - -1.0 401,180 + +0.1 401,180 + +1.2 401,180 + -0.3 401,180 + +0.0 401,180 + +0.0 401,181 - +0.3 401,181 - +0.4 401,203 + -0.9 401,204 - +1.3 401,204 - +0.0 401,204 - -2.1 401,204 - +0.0 401,204 - +2.3 401,204 - -1.8 401,213 + -0.2 401,214 - -0.8 401,256 + +0.6 401,256 + +0.1 401,256 + -1.7 401,256 + +0.0 401,256 + +1.6 401,256 + -0.5 401,256 + -0.1 401,256 + -0.3 401,256 + +1.3 401,256 + -1.3 401,256 + -0.7 401,256 + +0.0 401,256 + +0.0 401,256 + -1.8 401,256 + -0.4 401,256 + +1.0 401,256 + -0.7 401,257 - +0.4 401,257 - -0.2 401,257 - +0.0 401,257 - -0.7 401,257 - -1.1 401,257 - -0.4 401,257 - +1.5 401,257 - +0.0 401,257 - -0.4 401,260 + -1.0 401,260 + +0.6 401,260 + -0.1 401,260 + -1.2 401,260 + +0.4 401,260 + +0.2 401,260 + +0.0 401,260 + +0.5 401,260 + -0.2 401,260 + +0.4 401,260 + -1.0 401,260 + +1.0 401,260 + -0.2 401,261 - +1.6 401,261 - -1.6 401,261 - -0.8 401,261 - -0.4 401,261 - -0.4 401,261 - +0.0 401,261 - -0.4 401,286 + IAI47_20780 0.16 +0.3 401,389 + IAI47_20780 0.46 -0.4 401,389 + IAI47_20780 0.46 -0.3 401,389 + IAI47_20780 0.46 -0.6 401,389 + IAI47_20780 0.46 +0.2 401,390 - IAI47_20780 0.46 +0.3 401,390 - IAI47_20780 0.46 -1.0 401,390 - IAI47_20780 0.46 -0.2 401,405 + IAI47_20780 0.51 +0.3 401,405 + IAI47_20780 0.51 +0.0 401,405 + IAI47_20780 0.51 +4.1 401,405 + IAI47_20780 0.51 +0.5 401,406 - IAI47_20780 0.51 -0.4 401,406 - IAI47_20780 0.51 +1.2 401,406 - IAI47_20780 0.51 +0.2 401,406 - IAI47_20780 0.51 -0.1 401,602 + -1.5 401,602 + +0.0 401,602 + -0.9 401,603 - -1.4 401,648 + +0.3 401,683 + -0.2 401,683 + +1.4 401,683 + +0.0 401,684 - -1.0 401,684 - +0.6 401,684 - -2.0 401,789 + IAI47_20785 0.31 +0.5 401,790 - IAI47_20785 0.31 +0.1 401,790 - IAI47_20785 0.31 +0.0 401,807 + IAI47_20785 0.35 -0.7 401,808 - IAI47_20785 0.35 -1.3 401,808 - IAI47_20785 0.35 +0.4 401,825 + IAI47_20785 0.38 +0.4 401,826 - IAI47_20785 0.39 -1.0 401,826 - IAI47_20785 0.39 +1.3 401,826 - IAI47_20785 0.39 +0.1 401,888 + IAI47_20785 0.51 +1.2 401,888 + IAI47_20785 0.51 +1.0 401,889 - IAI47_20785 0.52 -1.2 401,890 + IAI47_20785 0.52 -0.9 401,906 - IAI47_20785 0.55 +1.0 401,913 - IAI47_20785 0.56 +0.4 401,913 - IAI47_20785 0.56 -1.0 401,997 - IAI47_20785 0.74 -0.5 401,997 - IAI47_20785 0.74 -0.1 402,004 + IAI47_20785 0.75 -1.2 402,005 - IAI47_20785 0.75 +1.6 402,029 + IAI47_20785 0.80 -0.5 402,030 - IAI47_20785 0.80 +0.9 402,039 - IAI47_20785 0.82 -0.1 402,043 + IAI47_20785 0.83 +0.7 402,046 + IAI47_20785 0.84 +0.6 402,046 + IAI47_20785 0.84 +0.4 402,046 + IAI47_20785 0.84 -0.7 402,046 + IAI47_20785 0.84 -0.4 402,046 + IAI47_20785 0.84 -0.8 402,047 - IAI47_20785 0.84 +0.3 402,047 - IAI47_20785 0.84 +1.6 402,049 + IAI47_20785 0.84 +0.4 402,049 + IAI47_20785 0.84 -0.6 402,050 - IAI47_20785 0.84 -1.6 402,050 - IAI47_20785 0.84 -0.3 402,050 - IAI47_20785 0.84 -0.6 402,050 - IAI47_20785 0.84 -1.1 402,050 - IAI47_20785 0.84 -1.0 402,050 - IAI47_20785 0.84 +0.1 402,117 + -0.6 402,117 + -0.7 402,118 - -0.9 402,129 + -0.3 402,129 + +1.0 402,145 - +0.7 402,147 + +0.1 402,148 - -1.1 402,148 - -2.2 402,148 - +0.0 402,176 + -0.7 402,177 - -0.4 402,179 + +0.6 402,179 + +0.6 402,180 - -2.0 402,180 - -1.4 402,180 - -0.8 402,186 + -0.3 402,186 + -2.0 402,209 + +0.4 402,210 - +0.7 402,218 + +0.0 402,228 + +0.3 402,229 - -0.5 402,229 - -0.2 402,264 + -1.2 402,277 - -0.2 402,282 + +0.3 402,301 + +1.1 402,301 + +0.4 402,302 - -1.0 402,302 - -0.2 402,312 + -0.4 402,313 - +0.3 402,313 - +0.2 402,361 + -1.3 402,361 + -1.2 402,362 - +0.4 402,362 - -0.2 402,403 - IAI47_20790 0.10 +0.3 402,403 - IAI47_20790 0.10 -1.0 402,451 - IAI47_20790 0.14 +0.8 402,468 + IAI47_20790 0.16 -1.8 402,468 + IAI47_20790 0.16 -0.4 402,482 + IAI47_20790 0.17 +0.4 402,482 + IAI47_20790 0.17 -0.7 402,483 - IAI47_20790 0.17 +0.7 402,555 + IAI47_20790 0.23 +0.7 402,555 + IAI47_20790 0.23 +1.6
Or see this region's nucleotide sequence