Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20695 and IAI47_20700 are separated by 9 nucleotides IAI47_20700 and IAI47_20705 are separated by 2 nucleotides IAI47_20705 and IAI47_20710 overlap by 17 nucleotides IAI47_20710 and IAI47_20715 are separated by 392 nucleotides IAI47_20715 and IAI47_20720 are separated by 16 nucleotides
IAI47_20695: IAI47_20695 - HesA/MoeB/ThiF family protein, at 387,875 to 388,843
_20695
IAI47_20700: IAI47_20700 - thiazole synthase, at 388,853 to 389,608
_20700
IAI47_20705: IAI47_20705 - sulfur carrier protein ThiS, at 389,611 to 389,808
_20705
IAI47_20710: IAI47_20710 - FAD-dependent oxidoreductase, at 389,792 to 390,736
_20710
IAI47_20715: IAI47_20715 - helix-turn-helix transcriptional regulator, at 391,129 to 391,443
_20715
IAI47_20720: IAI47_20720 - alkene reductase, at 391,460 to 392,578
_20720
Position (kb) 389
390
391 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 388.898 kb on - strand at 388.898 kb on - strand at 388.898 kb on - strand at 388.898 kb on - strand at 389.081 kb on - strand, within IAI47_20700 at 389.098 kb on + strand, within IAI47_20700 at 389.099 kb on - strand, within IAI47_20700 at 389.131 kb on + strand, within IAI47_20700 at 389.233 kb on + strand, within IAI47_20700 at 389.233 kb on + strand, within IAI47_20700 at 389.235 kb on + strand, within IAI47_20700 at 389.236 kb on - strand, within IAI47_20700 at 389.415 kb on + strand, within IAI47_20700 at 389.416 kb on + strand, within IAI47_20700 at 389.416 kb on + strand, within IAI47_20700 at 389.416 kb on + strand, within IAI47_20700 at 389.450 kb on + strand, within IAI47_20700 at 389.450 kb on + strand, within IAI47_20700 at 389.450 kb on + strand, within IAI47_20700 at 389.500 kb on + strand, within IAI47_20700 at 389.500 kb on + strand, within IAI47_20700 at 389.556 kb on + strand at 389.567 kb on - strand at 389.601 kb on + strand at 389.612 kb on + strand at 389.613 kb on - strand at 389.676 kb on - strand, within IAI47_20705 at 389.793 kb on + strand at 389.794 kb on - strand at 389.881 kb on - strand at 389.940 kb on + strand, within IAI47_20710 at 389.940 kb on + strand, within IAI47_20710 at 389.940 kb on + strand, within IAI47_20710 at 389.940 kb on + strand, within IAI47_20710 at 389.940 kb on + strand, within IAI47_20710 at 390.006 kb on + strand, within IAI47_20710 at 390.006 kb on + strand, within IAI47_20710 at 390.006 kb on + strand, within IAI47_20710 at 390.007 kb on - strand, within IAI47_20710 at 390.007 kb on - strand, within IAI47_20710 at 390.007 kb on - strand, within IAI47_20710 at 390.018 kb on - strand, within IAI47_20710 at 390.018 kb on - strand, within IAI47_20710 at 390.018 kb on - strand, within IAI47_20710 at 390.117 kb on + strand, within IAI47_20710 at 390.118 kb on - strand, within IAI47_20710 at 390.118 kb on - strand, within IAI47_20710 at 390.201 kb on - strand, within IAI47_20710 at 390.280 kb on + strand, within IAI47_20710 at 390.281 kb on + strand, within IAI47_20710 at 390.281 kb on + strand, within IAI47_20710 at 390.282 kb on - strand, within IAI47_20710 at 390.282 kb on - strand, within IAI47_20710 at 390.302 kb on + strand, within IAI47_20710 at 390.302 kb on + strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.363 kb on + strand, within IAI47_20710 at 390.363 kb on + strand, within IAI47_20710 at 390.364 kb on - strand, within IAI47_20710 at 390.467 kb on - strand, within IAI47_20710 at 390.494 kb on - strand, within IAI47_20710 at 390.776 kb on + strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.795 kb on + strand at 390.795 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.865 kb on + strand at 390.865 kb on + strand at 390.865 kb on + strand at 390.865 kb on + strand at 390.866 kb on - strand at 390.866 kb on - strand at 390.889 kb on + strand at 390.890 kb on - strand at 390.890 kb on - strand at 390.890 kb on - strand at 390.897 kb on + strand at 390.897 kb on + strand at 390.897 kb on + strand at 390.898 kb on - strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.917 kb on - strand at 390.917 kb on - strand at 390.917 kb on - strand at 390.917 kb on - strand at 390.927 kb on - strand at 390.943 kb on + strand at 390.946 kb on + strand at 390.947 kb on - strand at 390.986 kb on + strand at 390.987 kb on - strand at 390.992 kb on + strand at 390.993 kb on - strand at 390.993 kb on - strand at 391.036 kb on + strand at 391.037 kb on - strand at 391.089 kb on + strand at 391.095 kb on + strand at 391.095 kb on + strand at 391.095 kb on + strand at 391.096 kb on - strand at 391.115 kb on - strand at 391.131 kb on - strand at 391.176 kb on + strand, within IAI47_20715 at 391.176 kb on + strand, within IAI47_20715 at 391.177 kb on - strand, within IAI47_20715 at 391.197 kb on - strand, within IAI47_20715 at 391.197 kb on - strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.301 kb on - strand, within IAI47_20715 at 391.301 kb on - strand, within IAI47_20715 at 391.322 kb on + strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.338 kb on - strand, within IAI47_20715 at 391.347 kb on + strand, within IAI47_20715 at 391.348 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.418 kb on - strand at 391.418 kb on - strand at 391.459 kb on - strand at 391.480 kb on - strand at 391.485 kb on + strand at 391.486 kb on + strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.488 kb on + strand at 391.489 kb on - strand at 391.489 kb on - strand at 391.489 kb on - strand at 391.509 kb on + strand at 391.552 kb on + strand at 391.552 kb on + strand at 391.553 kb on - strand at 391.583 kb on - strand, within IAI47_20720 at 391.628 kb on + strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.653 kb on + strand, within IAI47_20720 at 391.653 kb on + strand, within IAI47_20720 at 391.665 kb on + strand, within IAI47_20720 at 391.665 kb on + strand, within IAI47_20720 at 391.665 kb on + strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.729 kb on + strand, within IAI47_20720 at 391.729 kb on + strand, within IAI47_20720 at 391.729 kb on + strand, within IAI47_20720 at 391.730 kb on - strand, within IAI47_20720 at 391.730 kb on - strand, within IAI47_20720 at 391.730 kb on - strand, within IAI47_20720 at 391.732 kb on + strand, within IAI47_20720 at 391.733 kb on - strand, within IAI47_20720
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 388,898 - -1.4 388,898 - +0.0 388,898 - -2.3 388,898 - -2.2 389,081 - IAI47_20700 0.30 -2.2 389,098 + IAI47_20700 0.32 -1.6 389,099 - IAI47_20700 0.33 -3.2 389,131 + IAI47_20700 0.37 -1.7 389,233 + IAI47_20700 0.50 -2.3 389,233 + IAI47_20700 0.50 -2.0 389,235 + IAI47_20700 0.51 -2.0 389,236 - IAI47_20700 0.51 -3.9 389,415 + IAI47_20700 0.74 -3.5 389,416 + IAI47_20700 0.74 -3.2 389,416 + IAI47_20700 0.74 -2.3 389,416 + IAI47_20700 0.74 -2.7 389,450 + IAI47_20700 0.79 -1.3 389,450 + IAI47_20700 0.79 -1.3 389,450 + IAI47_20700 0.79 -1.0 389,500 + IAI47_20700 0.86 -1.0 389,500 + IAI47_20700 0.86 -2.2 389,556 + -2.0 389,567 - -2.6 389,601 + +0.0 389,612 + +0.6 389,613 - -3.5 389,676 - IAI47_20705 0.33 -2.9 389,793 + +0.3 389,794 - -2.7 389,881 - -1.6 389,940 + IAI47_20710 0.16 -1.8 389,940 + IAI47_20710 0.16 -1.3 389,940 + IAI47_20710 0.16 -2.5 389,940 + IAI47_20710 0.16 -2.0 389,940 + IAI47_20710 0.16 -2.8 390,006 + IAI47_20710 0.23 -2.2 390,006 + IAI47_20710 0.23 -2.4 390,006 + IAI47_20710 0.23 -2.0 390,007 - IAI47_20710 0.23 +1.0 390,007 - IAI47_20710 0.23 -2.5 390,007 - IAI47_20710 0.23 -2.4 390,018 - IAI47_20710 0.24 -0.6 390,018 - IAI47_20710 0.24 +0.0 390,018 - IAI47_20710 0.24 -1.3 390,117 + IAI47_20710 0.34 -1.1 390,118 - IAI47_20710 0.34 -1.6 390,118 - IAI47_20710 0.34 +0.0 390,201 - IAI47_20710 0.43 -2.3 390,280 + IAI47_20710 0.52 -2.1 390,281 + IAI47_20710 0.52 +0.6 390,281 + IAI47_20710 0.52 -2.8 390,282 - IAI47_20710 0.52 -0.4 390,282 - IAI47_20710 0.52 -1.6 390,302 + IAI47_20710 0.54 -1.2 390,302 + IAI47_20710 0.54 -1.4 390,303 - IAI47_20710 0.54 -1.4 390,303 - IAI47_20710 0.54 -2.6 390,303 - IAI47_20710 0.54 -1.6 390,303 - IAI47_20710 0.54 -3.5 390,303 - IAI47_20710 0.54 -1.2 390,363 + IAI47_20710 0.60 -1.6 390,363 + IAI47_20710 0.60 +0.3 390,364 - IAI47_20710 0.61 +0.0 390,467 - IAI47_20710 0.71 -1.6 390,494 - IAI47_20710 0.74 -2.4 390,776 + -2.2 390,777 - -3.6 390,777 - -2.2 390,777 - +0.0 390,777 - -2.5 390,777 - -1.8 390,795 + -2.4 390,795 + -1.6 390,797 + -2.0 390,797 + -2.3 390,797 + -0.5 390,797 + -3.5 390,797 + -0.4 390,797 + -4.0 390,797 + -1.6 390,798 - +0.8 390,798 - -0.3 390,798 - +0.2 390,798 - -0.3 390,798 - -1.0 390,798 - +0.1 390,798 - -0.8 390,865 + -2.6 390,865 + -0.7 390,865 + -1.3 390,865 + -1.8 390,866 - -2.0 390,866 - -1.8 390,889 + -2.5 390,890 - -2.6 390,890 - -1.0 390,890 - -1.6 390,897 + +0.3 390,897 + -2.3 390,897 + -1.6 390,898 - +1.0 390,916 + +0.0 390,916 + -2.2 390,916 + -3.3 390,916 + -1.0 390,916 + -2.6 390,917 - -1.6 390,917 - -0.5 390,917 - +0.5 390,917 - -0.6 390,927 - +0.3 390,943 + +0.0 390,946 + -3.0 390,947 - +0.0 390,986 + -3.2 390,987 - -2.6 390,992 + -2.1 390,993 - +0.6 390,993 - -3.3 391,036 + +0.0 391,037 - +0.8 391,089 + -0.3 391,095 + -1.4 391,095 + -2.8 391,095 + -0.4 391,096 - -1.1 391,115 - -0.3 391,131 - -0.3 391,176 + IAI47_20715 0.15 +0.3 391,176 + IAI47_20715 0.15 +0.0 391,177 - IAI47_20715 0.15 +0.3 391,197 - IAI47_20715 0.22 -1.7 391,197 - IAI47_20715 0.22 +0.7 391,199 + IAI47_20715 0.22 +0.0 391,199 + IAI47_20715 0.22 +0.3 391,199 + +0.8 391,199 + IAI47_20715 0.22 +0.4 391,199 + IAI47_20715 0.22 -1.6 391,199 + IAI47_20715 0.22 +0.6 391,200 - IAI47_20715 0.23 +1.3 391,200 - IAI47_20715 0.23 -1.0 391,200 - IAI47_20715 0.23 -1.2 391,200 - IAI47_20715 0.23 -1.0 391,200 - IAI47_20715 0.23 -1.0 391,200 - IAI47_20715 0.23 +0.0 391,200 - IAI47_20715 0.23 -1.2 391,200 - IAI47_20715 0.23 +0.1 391,200 - IAI47_20715 0.23 -0.9 391,200 - IAI47_20715 0.23 -2.8 391,200 - IAI47_20715 0.23 +1.0 391,200 - IAI47_20715 0.23 -0.2 391,200 - IAI47_20715 0.23 -0.5 391,283 - IAI47_20715 0.49 -1.1 391,283 - IAI47_20715 0.49 +0.9 391,283 - IAI47_20715 0.49 -1.0 391,283 - IAI47_20715 0.49 -0.3 391,283 - IAI47_20715 0.49 -0.4 391,301 - IAI47_20715 0.55 +0.0 391,301 - IAI47_20715 0.55 -0.5 391,322 + IAI47_20715 0.61 -0.7 391,323 - IAI47_20715 0.62 -1.6 391,323 - IAI47_20715 0.62 +0.0 391,323 - IAI47_20715 0.62 -1.4 391,323 - IAI47_20715 0.62 -1.2 391,338 - IAI47_20715 0.66 +1.6 391,347 + IAI47_20715 0.69 +0.6 391,348 - IAI47_20715 0.70 +1.0 391,378 - IAI47_20715 0.79 -0.5 391,378 - IAI47_20715 0.79 -1.6 391,378 - IAI47_20715 0.79 +0.0 391,378 - IAI47_20715 0.79 -0.7 391,378 - IAI47_20715 0.79 +0.0 391,378 - IAI47_20715 0.79 +0.0 391,418 - -1.6 391,418 - -2.6 391,459 - +0.7 391,480 - +0.0 391,485 + -0.3 391,486 + -0.6 391,487 - +0.2 391,487 - -0.3 391,487 - -0.8 391,487 - -0.6 391,487 - +1.4 391,487 - -0.2 391,487 - +0.2 391,488 + +0.6 391,489 - +0.7 391,489 - -1.2 391,489 - -0.4 391,509 + +0.9 391,552 + +0.0 391,552 + -0.2 391,553 - +0.1 391,583 - IAI47_20720 0.11 +0.0 391,628 + IAI47_20720 0.15 +0.6 391,629 - IAI47_20720 0.15 +0.0 391,629 - IAI47_20720 0.15 -0.5 391,629 - IAI47_20720 0.15 +0.7 391,629 - IAI47_20720 0.15 -0.3 391,653 + IAI47_20720 0.17 -0.1 391,653 + IAI47_20720 0.17 +0.9 391,665 + IAI47_20720 0.18 -0.4 391,665 + IAI47_20720 0.18 -0.3 391,665 + IAI47_20720 0.18 -0.5 391,666 - IAI47_20720 0.18 +0.2 391,666 - IAI47_20720 0.18 +0.3 391,666 - IAI47_20720 0.18 +1.3 391,666 - IAI47_20720 0.18 +1.6 391,729 + IAI47_20720 0.24 +0.2 391,729 + IAI47_20720 0.24 -0.7 391,729 + IAI47_20720 0.24 +2.1 391,730 - IAI47_20720 0.24 +1.3 391,730 - IAI47_20720 0.24 +0.5 391,730 - IAI47_20720 0.24 +1.2 391,732 + IAI47_20720 0.24 -0.2 391,733 - IAI47_20720 0.24 -0.4
Or see this region's nucleotide sequence