Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20530 and IAI47_20535 are separated by 9 nucleotides IAI47_20535 and IAI47_20540 are separated by 85 nucleotides IAI47_20540 and IAI47_20545 overlap by 11 nucleotides IAI47_20545 and IAI47_20550 are separated by 230 nucleotides
IAI47_20530: IAI47_20530 - maltose ABC transporter permease MalF, at 355,967 to 357,493
_20530
IAI47_20535: IAI47_20535 - maltose ABC transporter permease MalG, at 357,503 to 358,393
_20535
IAI47_20540: IAI47_20540 - TetR/AcrR family transcriptional regulator, at 358,479 to 359,087
_20540
IAI47_20545: IAI47_20545 - NAD(P)H-dependent oxidoreductase, at 359,077 to 359,679
_20545
IAI47_20550: IAI47_20550 - ABC transporter permease, at 359,910 to 360,578
_20550
Position (kb) 358
359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 357.502 kb on + strand at 357.503 kb on - strand at 357.503 kb on - strand at 357.503 kb on - strand at 357.508 kb on + strand at 357.509 kb on - strand at 357.509 kb on - strand at 357.513 kb on + strand at 357.513 kb on + strand at 357.513 kb on + strand at 357.513 kb on + strand at 357.513 kb on + strand at 357.513 kb on + strand at 357.514 kb on - strand at 357.514 kb on - strand at 357.567 kb on + strand at 357.567 kb on + strand at 357.567 kb on + strand at 357.568 kb on - strand at 357.568 kb on - strand at 357.572 kb on - strand at 357.572 kb on - strand at 357.572 kb on - strand at 357.572 kb on - strand at 357.572 kb on - strand at 357.750 kb on + strand, within IAI47_20535 at 357.750 kb on + strand, within IAI47_20535 at 357.751 kb on - strand, within IAI47_20535 at 357.838 kb on + strand, within IAI47_20535 at 357.839 kb on - strand, within IAI47_20535 at 357.882 kb on + strand, within IAI47_20535 at 357.883 kb on - strand, within IAI47_20535 at 357.923 kb on + strand, within IAI47_20535 at 357.923 kb on + strand, within IAI47_20535 at 357.923 kb on + strand, within IAI47_20535 at 357.923 kb on + strand, within IAI47_20535 at 357.924 kb on - strand, within IAI47_20535 at 357.924 kb on - strand, within IAI47_20535 at 357.950 kb on + strand, within IAI47_20535 at 357.950 kb on + strand, within IAI47_20535 at 357.951 kb on - strand, within IAI47_20535 at 357.951 kb on - strand, within IAI47_20535 at 357.951 kb on - strand, within IAI47_20535 at 357.974 kb on - strand, within IAI47_20535 at 357.974 kb on - strand, within IAI47_20535 at 357.998 kb on + strand, within IAI47_20535 at 357.998 kb on + strand, within IAI47_20535 at 357.998 kb on + strand, within IAI47_20535 at 357.999 kb on - strand, within IAI47_20535 at 358.000 kb on + strand, within IAI47_20535 at 358.001 kb on - strand, within IAI47_20535 at 358.001 kb on - strand, within IAI47_20535 at 358.001 kb on - strand, within IAI47_20535 at 358.041 kb on - strand, within IAI47_20535 at 358.160 kb on - strand, within IAI47_20535 at 358.160 kb on - strand, within IAI47_20535 at 358.229 kb on + strand, within IAI47_20535 at 358.230 kb on - strand, within IAI47_20535 at 358.230 kb on - strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.274 kb on + strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.360 kb on - strand at 358.391 kb on + strand at 358.392 kb on - strand at 358.392 kb on - strand at 358.407 kb on + strand at 358.407 kb on + strand at 358.407 kb on + strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.422 kb on + strand at 358.422 kb on + strand at 358.423 kb on - strand at 358.423 kb on - strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.500 kb on - strand at 358.500 kb on - strand at 358.500 kb on - strand at 358.650 kb on - strand, within IAI47_20540 at 358.650 kb on - strand, within IAI47_20540 at 358.697 kb on - strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.888 kb on + strand, within IAI47_20540 at 358.888 kb on + strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.930 kb on + strand, within IAI47_20540 at 358.931 kb on - strand, within IAI47_20540 at 359.071 kb on - strand at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.139 kb on - strand, within IAI47_20545 at 359.139 kb on - strand, within IAI47_20545 at 359.170 kb on + strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.383 kb on + strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.420 kb on + strand, within IAI47_20545 at 359.421 kb on - strand, within IAI47_20545 at 359.598 kb on + strand, within IAI47_20545 at 359.599 kb on - strand, within IAI47_20545 at 359.665 kb on + strand at 359.665 kb on + strand at 359.665 kb on + strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.668 kb on + strand at 359.668 kb on + strand at 359.668 kb on + strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.691 kb on + strand at 359.691 kb on + strand at 359.691 kb on + strand at 359.692 kb on - strand at 359.692 kb on - strand at 359.729 kb on - strand at 359.734 kb on + strand at 359.756 kb on - strand at 359.756 kb on - strand at 359.756 kb on - strand at 359.840 kb on - strand at 359.902 kb on + strand at 359.904 kb on + strand at 359.905 kb on - strand at 359.905 kb on - strand at 359.911 kb on + strand at 359.911 kb on + strand at 359.912 kb on - strand at 359.920 kb on + strand at 359.968 kb on - strand at 360.026 kb on - strand, within IAI47_20550
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 357,502 + -0.3 357,503 - +0.0 357,503 - -1.0 357,503 - +1.3 357,508 + +0.6 357,509 - +0.0 357,509 - -1.6 357,513 + -0.1 357,513 + -0.6 357,513 + +1.0 357,513 + +0.2 357,513 + +1.5 357,513 + +1.5 357,514 - -0.3 357,514 - +0.0 357,567 + -1.3 357,567 + -1.5 357,567 + -0.1 357,568 - -0.7 357,568 - +0.0 357,572 - -1.4 357,572 - -0.6 357,572 - +0.6 357,572 - +1.0 357,572 - -0.2 357,750 + IAI47_20535 0.28 -0.6 357,750 + IAI47_20535 0.28 -0.2 357,751 - IAI47_20535 0.28 +0.3 357,838 + IAI47_20535 0.38 +0.1 357,839 - IAI47_20535 0.38 +0.8 357,882 + IAI47_20535 0.43 +2.0 357,883 - IAI47_20535 0.43 +1.0 357,923 + IAI47_20535 0.47 -1.7 357,923 + IAI47_20535 0.47 -2.3 357,923 + IAI47_20535 0.47 +0.5 357,923 + IAI47_20535 0.47 -1.3 357,924 - IAI47_20535 0.47 -0.9 357,924 - IAI47_20535 0.47 -0.7 357,950 + IAI47_20535 0.50 +0.0 357,950 + IAI47_20535 0.50 +0.6 357,951 - IAI47_20535 0.50 +0.3 357,951 - IAI47_20535 0.50 +0.0 357,951 - IAI47_20535 0.50 +1.2 357,974 - IAI47_20535 0.53 -1.8 357,974 - IAI47_20535 0.53 -0.3 357,998 + IAI47_20535 0.56 +0.9 357,998 + IAI47_20535 0.56 +2.0 357,998 + IAI47_20535 0.56 +0.0 357,999 - IAI47_20535 0.56 +0.7 358,000 + IAI47_20535 0.56 -2.0 358,001 - IAI47_20535 0.56 +0.9 358,001 - IAI47_20535 0.56 +0.2 358,001 - IAI47_20535 0.56 +0.0 358,041 - IAI47_20535 0.60 -0.7 358,160 - IAI47_20535 0.74 -1.6 358,160 - IAI47_20535 0.74 -0.6 358,229 + IAI47_20535 0.81 -0.7 358,230 - IAI47_20535 0.82 +0.8 358,230 - IAI47_20535 0.82 +0.5 358,256 + IAI47_20535 0.85 +0.6 358,256 + IAI47_20535 0.85 -0.4 358,256 + IAI47_20535 0.85 +2.0 358,257 - IAI47_20535 0.85 +0.0 358,257 - IAI47_20535 0.85 +1.6 358,257 - IAI47_20535 0.85 +0.5 358,274 + IAI47_20535 0.87 +1.0 358,275 - IAI47_20535 0.87 +0.6 358,275 - IAI47_20535 0.87 -0.5 358,275 - IAI47_20535 0.87 -0.3 358,275 - IAI47_20535 0.87 -0.6 358,360 - +0.2 358,391 + -0.9 358,392 - +0.5 358,392 - +0.6 358,407 + -0.5 358,407 + +0.3 358,407 + -1.5 358,408 - +0.6 358,408 - -1.0 358,408 - +0.7 358,408 - +0.5 358,422 + +0.1 358,422 + +0.2 358,423 - -0.3 358,423 - +0.2 358,480 + +1.2 358,480 + +1.4 358,480 + -0.3 358,480 + +0.6 358,480 + +1.4 358,481 - +1.6 358,481 - +0.0 358,481 - +0.1 358,481 - +1.6 358,500 - +0.7 358,500 - -0.7 358,500 - +0.3 358,650 - IAI47_20540 0.28 +2.8 358,650 - IAI47_20540 0.28 +1.4 358,697 - IAI47_20540 0.36 -0.8 358,789 + IAI47_20540 0.51 +1.0 358,789 + IAI47_20540 0.51 -0.8 358,789 + IAI47_20540 0.51 -0.7 358,789 + IAI47_20540 0.51 +2.0 358,888 + IAI47_20540 0.67 -0.6 358,888 + IAI47_20540 0.67 -0.3 358,889 - IAI47_20540 0.67 -3.6 358,889 - IAI47_20540 0.67 -0.5 358,889 - IAI47_20540 0.67 +0.7 358,930 + IAI47_20540 0.74 +0.0 358,931 - IAI47_20540 0.74 +0.0 359,071 - +1.7 359,138 + IAI47_20545 0.10 +0.0 359,138 + IAI47_20545 0.10 +1.5 359,138 + IAI47_20545 0.10 +0.4 359,138 + IAI47_20545 0.10 +0.0 359,138 + IAI47_20545 0.10 -0.2 359,139 - IAI47_20545 0.10 +1.2 359,139 - IAI47_20545 0.10 +1.2 359,170 + IAI47_20545 0.15 +1.6 359,171 - IAI47_20545 0.16 -0.7 359,171 - IAI47_20545 0.16 -0.8 359,171 - IAI47_20545 0.16 +0.5 359,171 - IAI47_20545 0.16 -0.6 359,383 + IAI47_20545 0.51 +1.2 359,384 - IAI47_20545 0.51 +1.4 359,384 - IAI47_20545 0.51 -0.1 359,384 - IAI47_20545 0.51 -0.3 359,384 - IAI47_20545 0.51 +0.3 359,420 + IAI47_20545 0.57 -0.6 359,421 - IAI47_20545 0.57 +0.7 359,598 + IAI47_20545 0.86 -0.7 359,599 - IAI47_20545 0.87 +0.1 359,665 + +0.1 359,665 + +0.0 359,665 + +1.4 359,666 - +0.6 359,666 - +0.4 359,666 - +0.5 359,666 - +0.4 359,666 - -0.3 359,668 + +0.6 359,668 + +0.4 359,668 + -1.2 359,669 - +0.3 359,669 - +0.7 359,669 - -0.4 359,669 - +0.6 359,669 - -0.7 359,669 - -0.5 359,669 - +0.4 359,691 + -0.0 359,691 + +0.3 359,691 + -0.6 359,692 - -0.6 359,692 - -0.7 359,729 - +1.7 359,734 + -1.2 359,756 - +0.6 359,756 - +0.2 359,756 - +0.4 359,840 - -0.2 359,902 + -0.9 359,904 + -0.4 359,905 - +0.4 359,905 - +0.5 359,911 + -1.5 359,911 + +0.5 359,912 - +0.5 359,920 + +0.3 359,968 - -1.6 360,026 - IAI47_20550 0.17 -1.0
Or see this region's nucleotide sequence