Strain Fitness in Pantoea sp. MT58 around IAI47_18895

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
15,231	+		IAI47_18890	0.80	-1.0
15,231	+		IAI47_18890	0.80	-0.1
15,232	-		IAI47_18890	0.80	+1.0
15,239	+		IAI47_18890	0.80	+0.8
15,353	+		IAI47_18890	0.83	-0.6
15,573	+		IAI47_18890	0.88	+0.9
15,573	+		IAI47_18890	0.88	+1.0
15,573	+		IAI47_18890	0.88	-0.6
15,573	+		IAI47_18890	0.88	-0.0
15,574	-		IAI47_18890	0.88	+0.0
15,574	-		IAI47_18890	0.88	+0.5
15,574	-		IAI47_18890	0.88	+0.0
15,574	-		IAI47_18890	0.88	+0.1
15,574	-		IAI47_18890	0.88	-1.4
15,586	-		IAI47_18890	0.88	-0.2
15,687	+				+1.0
15,687	+				-0.7
15,734	+				-0.7
15,734	+				-1.6
15,734	+				+0.5
15,735	-				+0.8
15,735	-				-0.7
15,845	+				+0.7
15,845	+				-0.4
15,845	+				-1.1
15,846	-				+0.5
15,846	-				-0.7
15,846	-				-0.1
15,846	-				+0.7
15,846	-				-0.4
15,846	-				+2.0
15,846	-				+0.2
15,846	-				-0.4
15,846	-				-0.6
15,847	+				+0.8
15,847	+				+0.8
15,847	+				+2.8
15,847	+				+0.0
15,847	+				+1.8
15,847	+				-1.6
15,847	+				-1.7
15,847	+				+0.5
15,847	+				+1.2
15,847	+				+0.2
15,848	-				+1.3
15,848	-				-1.0
15,848	-				-1.0
15,848	-				-0.6
15,848	-				+0.3
15,848	-				-1.1
15,848	-				-0.2
15,852	+				+0.5
16,015	-				+0.5
16,015	-				+1.0
16,077	+				+0.3
16,077	+				+0.5
16,109	+				-0.7
16,109	+				-0.6
16,109	+				+1.5
16,109	+				-0.2
16,109	+				+0.0
16,110	-				-0.4
16,110	-				+0.1
16,110	-				+0.6
16,110	-				+0.9
16,110	-				-0.4
16,118	+				-1.0
16,119	-				-1.8
16,121	+				-0.6
16,121	+				-2.0
16,122	-				+0.8
16,122	-				+1.3
16,158	+				+0.6
16,281	+				+1.0
16,281	+				-0.1
16,282	-				+1.0
16,282	-				-0.3
16,295	+				-1.6
16,295	+				+0.8
16,296	-				-0.7
16,350	+		IAI47_18895	0.11	-0.4
16,351	-		IAI47_18895	0.12	-1.2
16,374	-		IAI47_18895	0.13	+0.1
16,374	-		IAI47_18895	0.13	-1.7
16,434	+		IAI47_18895	0.19	-0.2
16,434	+		IAI47_18895	0.19	-0.3
16,500	-		IAI47_18895	0.24	+0.3
16,515	+		IAI47_18895	0.25	+0.8
16,515	+		IAI47_18895	0.25	+0.4
16,516	-		IAI47_18895	0.25	-1.3
16,540	+		IAI47_18895	0.27	+0.0
16,570	-		IAI47_18895	0.30	+0.4
16,579	+		IAI47_18895	0.31	-1.0
16,579	+		IAI47_18895	0.31	+0.4
16,579	+		IAI47_18895	0.31	-0.2
16,580	-		IAI47_18895	0.31	+0.2
16,580	-		IAI47_18895	0.31	-0.2
16,597	+		IAI47_18895	0.32	-1.4
16,598	-		IAI47_18895	0.32	-1.0
16,665	+		IAI47_18895	0.38	-0.2
16,665	+		IAI47_18895	0.38	-0.8
16,721	+		IAI47_18895	0.43	-1.0
16,856	-		IAI47_18895	0.54	-2.0
16,891	+		IAI47_18895	0.57	+1.0
16,891	+		IAI47_18895	0.57	-1.0
16,891	+		IAI47_18895	0.57	+1.0
16,891	+		IAI47_18895	0.57	+0.7
16,892	-		IAI47_18895	0.57	-1.5
16,894	+		IAI47_18895	0.57	-0.6
16,894	+		IAI47_18895	0.57	+0.7
16,894	+		IAI47_18895	0.57	-1.3
16,894	+		IAI47_18895	0.57	-1.1
16,895	-		IAI47_18895	0.57	+2.6
16,895	-		IAI47_18895	0.57	-0.7
16,895	-		IAI47_18895	0.57	-0.2
16,895	-		IAI47_18895	0.57	-1.3
16,895	-		IAI47_18895	0.57	-1.4
16,895	-		IAI47_18895	0.57	+3.0
16,907	+		IAI47_18895	0.58	+0.0
16,907	+		IAI47_18895	0.58	+1.4
16,908	-		IAI47_18895	0.58	-1.0
16,908	-		IAI47_18895	0.58	-0.4
16,920	+		IAI47_18895	0.59	-1.3
16,926	-		IAI47_18895	0.60	-0.6
17,020	-		IAI47_18895	0.68	-0.2
17,098	+		IAI47_18895	0.74	-0.3
17,098	+		IAI47_18895	0.74	-0.4
17,098	+		IAI47_18895	0.74	+1.2
17,099	-		IAI47_18895	0.74	+2.3
17,099	-		IAI47_18895	0.74	+0.4
17,134	+		IAI47_18895	0.77	+0.2
17,135	-		IAI47_18895	0.77	+1.2
17,203	-		IAI47_18895	0.83	-1.0
17,240	+		IAI47_18895	0.86	-0.9
17,240	+		IAI47_18895	0.86	-0.6
17,240	+		IAI47_18895	0.86	+0.2
17,240	+		IAI47_18895	0.86	-1.0
17,240	+		IAI47_18895	0.86	-1.6
17,241	-		IAI47_18895	0.86	+0.8
17,241	-		IAI47_18895	0.86	-0.7
17,251	+		IAI47_18895	0.87	-0.5
17,294	+				+0.0
17,294	+				+0.4
17,303	+				-0.8
17,353	-				-0.5
17,358	+				+0.0
17,359	-				+0.0
17,406	+				-0.7
17,446	+				-0.7
17,446	+				-1.0
17,447	-				+0.2
17,447	-				-0.3
17,447	-				+1.3
17,447	-				-1.0
17,447	-				-0.6
17,447	-				+0.0
17,448	+				-0.6
17,448	+				+0.2
17,449	-				-0.2
17,449	-				+0.0
17,504	-				+1.2
17,559	+				-0.2
17,574	+				+0.0
17,574	+				+1.7
17,575	-				+2.8
17,575	-				+1.8
17,575	-				+0.8
17,576	+				+1.0
17,576	+				-0.9
17,576	+				+1.3
17,577	-				+0.8
17,577	-				-0.1
17,641	+				+1.0
17,653	+				-1.3
17,654	-				-0.6
17,654	-				-1.4
17,677	-				+2.5
17,693	+				-1.6
17,694	-				+0.0
17,703	-				-0.3
17,718	+				-0.7
17,718	+				-0.1
17,718	+				+1.0
17,718	+				-0.2
17,718	+				+0.2
17,719	-				+1.6
17,719	-				+0.0
17,729	-				+1.0
17,729	-				+0.5
17,729	-				-0.4
17,729	-				+0.3
17,729	-				-0.4
17,729	-				-0.4
17,739	+		IAI47_18900	0.11	-0.2
17,740	-		IAI47_18900	0.11	-0.4
17,740	-		IAI47_18900	0.11	+0.0
17,761	+		IAI47_18900	0.17	-0.4
17,761	+		IAI47_18900	0.17	-0.3
17,761	+		IAI47_18900	0.17	+0.1
17,761	+		IAI47_18900	0.17	+0.8
17,761	+		IAI47_18900	0.17	+0.6
17,762	-		IAI47_18900	0.17	-2.1
17,762	-		IAI47_18900	0.17	-1.6
17,763	+		IAI47_18900	0.17	+0.4
17,763	+		IAI47_18900	0.17	+0.4
17,763	+		IAI47_18900	0.17	-0.8
17,763	+		IAI47_18900	0.17	-0.6
17,763	+		IAI47_18900	0.17	-1.2
17,764	-		IAI47_18900	0.18	-0.6
17,801	-		IAI47_18900	0.27	-0.3
17,801	-		IAI47_18900	0.27	+0.9
17,832	+		IAI47_18900	0.35	+0.3
17,832	+		IAI47_18900	0.35	-0.4
17,832	+		IAI47_18900	0.35	+1.0
17,833	-		IAI47_18900	0.35	-0.7
17,833	-		IAI47_18900	0.35	+0.0
17,833	-		IAI47_18900	0.35	-0.1
17,834	+		IAI47_18900	0.35	+0.0
17,834	+		IAI47_18900	0.35	+0.6
17,835	-		IAI47_18900	0.36	+2.0
17,835	-		IAI47_18900	0.36	+1.2
17,835	-		IAI47_18900	0.36	-1.1
17,835	-		IAI47_18900	0.36	+0.6
17,883	-		IAI47_18900	0.48	+1.3
17,955	+		IAI47_18900	0.66	+0.7
17,955	+		IAI47_18900	0.66	+2.1
17,955	+		IAI47_18900	0.66	-0.1
17,955	+		IAI47_18900	0.66	-0.3
17,956	-		IAI47_18900	0.66	+0.3
17,956	-		IAI47_18900	0.66	-0.7
17,956	-		IAI47_18900	0.66	-0.1
17,956	-		IAI47_18900	0.66	-0.9
17,956	-		IAI47_18900	0.66	+0.8
18,001	+		IAI47_18900	0.78	-0.2
18,024	+		IAI47_18900	0.84	+1.0
18,043	+		IAI47_18900	0.89	+0.0
18,044	-		IAI47_18900	0.89	-0.6
18,044	-		IAI47_18900	0.89	+0.9
18,049	+				+0.6
18,050	-				+0.3
18,050	-				+0.0
18,084	-				-2.6
18,107	-				-0.3
18,119	+				+1.0
18,120	-				-0.7
18,120	-				+0.1
18,120	-				-0.9
18,120	-				+0.0
18,143	-				-0.6
18,143	-				+1.4
18,249	+		IAI47_18905	0.18	+1.0
18,330	+		IAI47_18905	0.31	-0.6
18,330	+		IAI47_18905	0.31	+0.5
18,375	+		IAI47_18905	0.38	-2.0