Strain Fitness in Pantoea sp. MT58 around IAI47_15100

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
3,182,911	-				+0.1
3,182,911	-				+0.1
3,182,974	+				+2.5
3,182,974	+				+0.5
3,182,974	+				+0.8
3,182,974	+				-0.4
3,182,974	+				-0.3
3,182,974	+				+0.6
3,182,974	+				+0.0
3,182,975	-				-1.3
3,182,975	-				-0.4
3,182,975	-				+0.8
3,182,975	-				+0.7
3,182,977	+				-0.6
3,182,978	-				-0.5
3,182,978	-				+1.3
3,182,978	-				+0.1
3,182,985	-				+0.4
3,182,985	-				+0.7
3,183,023	+				-2.2
3,183,024	-				+0.7
3,183,024	-				+1.1
3,183,045	-				+0.5
3,183,056	+				-1.3
3,183,056	+				+1.3
3,183,057	-				-0.4
3,183,057	-				-0.2
3,183,057	-				+2.5
3,183,057	-				-0.9
3,183,083	-				-0.7
3,183,104	+				+0.0
3,183,104	+				+0.8
3,183,104	+				-0.2
3,183,104	+				+0.4
3,183,104	+				+0.4
3,183,104	+				+0.6
3,183,104	+				+0.1
3,183,105	-				-1.2
3,183,105	-				+1.3
3,183,105	-				-0.5
3,183,105	-				-1.6
3,183,105	-				+1.9
3,183,174	+				+0.6
3,183,175	-				-0.4
3,183,206	+				+0.3
3,183,206	+				+0.9
3,183,207	-				-0.0
3,183,210	+				-0.7
3,183,210	+				-0.1
3,183,211	-				+0.6
3,183,211	-				-0.4
3,183,211	-				-0.7
3,183,211	-				+0.3
3,183,211	-				-0.9
3,183,211	-				+0.1
3,183,211	-				+2.1
3,183,212	+				-0.9
3,183,212	+				-1.7
3,183,212	+				+0.5
3,183,212	+				+1.4
3,183,212	+				+1.4
3,183,213	-				+1.4
3,183,213	-				-0.6
3,183,213	-				+0.1
3,183,213	-				-0.3
3,183,213	-				-0.9
3,183,213	-				-0.9
3,183,229	+				-0.2
3,183,229	+				+0.7
3,183,230	-				-1.1
3,183,273	+				-0.7
3,183,274	-				-1.9
3,183,319	+		IAI47_15090	0.20	+0.1
3,183,319	+		IAI47_15090	0.20	+0.5
3,183,320	-		IAI47_15090	0.20	-0.9
3,183,320	-		IAI47_15090	0.20	-0.4
3,183,320	-		IAI47_15090	0.20	+1.1
3,183,343	+		IAI47_15090	0.28	+0.4
3,183,344	-		IAI47_15090	0.29	+1.1
3,183,360	+		IAI47_15090	0.34	-0.1
3,183,360	+		IAI47_15090	0.34	-0.4
3,183,360	+		IAI47_15090	0.34	-0.6
3,183,360	+		IAI47_15090	0.34	+0.7
3,183,360	+		IAI47_15090	0.34	-0.3
3,183,361	-		IAI47_15090	0.34	+1.4
3,183,361	-		IAI47_15090	0.34	-0.3
3,183,361	-		IAI47_15090	0.34	+0.9
3,183,361	-		IAI47_15090	0.34	-1.1
3,183,420	+		IAI47_15090	0.54	+1.1
3,183,469	-		IAI47_15090	0.71	-0.4
3,183,533	+				+0.3
3,183,533	+				-0.0
3,183,534	-				+1.1
3,183,534	-				+0.9
3,183,534	-				-0.0
3,183,541	+				-0.1
3,183,542	-				-0.4
3,183,542	-				+1.0
3,183,542	-				+0.5
3,183,619	+		IAI47_15095	0.20	+0.7
3,183,619	+		IAI47_15095	0.20	+0.8
3,183,619	+		IAI47_15095	0.20	+0.5
3,183,619	+		IAI47_15095	0.20	-0.6
3,183,619	+		IAI47_15095	0.20	-0.6
3,183,620	-		IAI47_15095	0.20	-1.2
3,183,620	-		IAI47_15095	0.20	+1.1
3,183,620	-		IAI47_15095	0.20	+0.5
3,183,659	+		IAI47_15095	0.31	+0.5
3,183,659	+		IAI47_15095	0.31	-0.3
3,183,659	+		IAI47_15095	0.31	+0.4
3,183,659	+		IAI47_15095	0.31	-0.1
3,183,659	+		IAI47_15095	0.31	+0.1
3,183,660	-		IAI47_15095	0.32	+0.5
3,183,660	-		IAI47_15095	0.32	+0.0
3,183,828	+		IAI47_15095	0.80	-0.3
3,183,829	-		IAI47_15095	0.80	-1.4
3,183,829	-		IAI47_15095	0.80	+1.1
3,183,897	+				+0.1
3,183,897	+				-1.0
3,183,897	+				-0.9
3,183,897	+				+2.5
3,183,898	-				+0.1
3,183,898	-				+0.7
3,183,898	-				-0.1
3,183,919	+				+1.7
3,183,919	+				-0.3
3,183,919	+				-1.2
3,183,919	+				-0.3
3,183,920	-				+0.1
3,183,920	-				-0.4
3,184,013	+		IAI47_15100	0.25	+2.9
3,184,013	+		IAI47_15100	0.25	+1.1
3,184,014	-		IAI47_15100	0.26	-0.3
3,184,014	-		IAI47_15100	0.26	+0.2
3,184,014	-		IAI47_15100	0.26	+0.2
3,184,014	-		IAI47_15100	0.26	+0.8
3,184,014	-		IAI47_15100	0.26	-0.2
3,184,081	+		IAI47_15100	0.40	-0.8
3,184,081	+		IAI47_15100	0.40	-0.7
3,184,081	+		IAI47_15100	0.40	+1.0
3,184,081	+		IAI47_15100	0.40	-0.4
3,184,082	-		IAI47_15100	0.40	+1.3
3,184,082	-		IAI47_15100	0.40	+0.4
3,184,082	-		IAI47_15100	0.40	-0.3
3,184,082	-		IAI47_15100	0.40	+2.1
3,184,082	-		IAI47_15100	0.40	-2.3
3,184,082	-		IAI47_15100	0.40	+1.6
3,184,082	-		IAI47_15100	0.40	-0.1
3,184,231	+		IAI47_15100	0.72	+0.5
3,184,231	+		IAI47_15100	0.72	-0.3
3,184,235	+		IAI47_15100	0.73	+0.1
3,184,235	+		IAI47_15100	0.73	+0.4
3,184,235	+		IAI47_15100	0.73	-0.9
3,184,235	+		IAI47_15100	0.73	-1.1
3,184,266	+		IAI47_15100	0.79	+0.6
3,184,266	+		IAI47_15100	0.79	-0.9
3,184,266	+		IAI47_15100	0.79	-0.2
3,184,266	+		IAI47_15100	0.79	+0.0
3,184,267	-		IAI47_15100	0.80	+0.9
3,184,267	-		IAI47_15100	0.80	+0.1
3,184,306	+		IAI47_15100	0.88	+0.9
3,184,306	+		IAI47_15100	0.88	-0.0
3,184,306	+		IAI47_15100	0.88	-0.2
3,184,306	+		IAI47_15100	0.88	+0.6
3,184,306	+		IAI47_15100	0.88	+0.0
3,184,306	+		IAI47_15100	0.88	-0.7
3,184,307	-		IAI47_15100	0.88	-1.9
3,184,307	-		IAI47_15100	0.88	+1.1
3,184,307	-		IAI47_15100	0.88	+1.7
3,184,321	+				+0.9
3,184,321	+				-0.4
3,184,321	+				-2.2
3,184,321	+				+0.9
3,184,321	+				-1.5
3,184,322	-				+2.1
3,184,322	-				-0.2
3,184,322	-				-0.3
3,184,322	-				+0.7
3,184,322	-				-0.6
3,184,322	-				+0.1
3,184,341	+				+0.6
3,184,341	+				+1.1
3,184,361	+				-0.3
3,184,361	+				+1.2
3,184,383	+				-0.6
3,184,383	+				-0.7
3,184,383	+				+4.1
3,184,384	-				-1.7
3,184,384	-				-0.1
3,184,384	-				+0.9
3,184,407	-				-0.9
3,184,410	+				-1.3
3,184,411	-				+0.7
3,184,411	-				+1.1
3,184,411	-				+0.7
3,184,411	-				+0.1
3,184,411	-				-3.2
3,184,411	-				-2.2
3,184,414	+				-0.2
3,184,414	+				-0.4
3,184,415	-				+0.3
3,184,415	-				-0.1
3,184,431	+				+0.1
3,184,431	+				+0.8
3,184,432	-				+1.2
3,184,432	-				+1.4
3,184,432	-				+1.4
3,184,432	-				-0.3
3,184,479	-				-0.3
3,184,486	-				-0.5
3,184,486	-				+0.0
3,184,520	+				-1.1
3,184,521	-				+1.9
3,184,521	-				+1.2
3,184,578	+				+0.7
3,184,579	-				+0.1
3,184,795	+		IAI47_15105	0.82	-0.1
3,184,795	+		IAI47_15105	0.82	+0.1
3,184,795	+		IAI47_15105	0.82	+0.1
3,184,796	-		IAI47_15105	0.83	-0.9
3,184,796	-		IAI47_15105	0.83	+1.5
3,184,796	-		IAI47_15105	0.83	-0.1
3,184,827	+				-0.1
3,184,828	-				-0.5
3,184,843	+				+0.6
3,184,843	+				+0.6
3,184,844	-				-0.2
3,184,844	-				-0.3
3,184,863	+				+0.4
3,184,863	+				+0.0
3,184,863	+				-0.4
3,184,864	-				-1.6
3,184,864	-				+0.1
3,184,922	+				+0.1
3,184,922	+				+1.4
3,184,922	+				-1.1
3,184,922	+				+1.0
3,184,922	+				+0.1
3,184,923	-				+0.4
3,184,923	-				+1.4
3,184,924	+				+0.7
3,184,924	+				+0.3
3,184,925	-				-0.4
3,184,957	-				-0.5
3,184,975	+				-0.6
3,184,976	-				-1.2
3,184,976	-				+1.4
3,184,989	+				+0.5
3,184,990	-				-0.3
3,185,057	+				-0.7
3,185,057	+				-0.4
3,185,057	+				-0.6
3,185,057	+				+0.4
3,185,057	+				+0.8
3,185,090	+				-0.5
3,185,090	+				-0.1
3,185,091	-				-0.4
3,185,141	+				-0.1
3,185,141	+				+0.6
3,185,155	+				-0.3
3,185,155	+				+1.2
3,185,156	-				+1.3
3,185,163	-				-1.2
3,185,282	+				-0.4
3,185,282	+				-2.0
3,185,301	+				-1.0
3,185,301	+				-0.4