Strain Fitness in Pantoea sp. MT58 around IAI47_14955

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
3,153,680	-		IAI47_14950	0.50	+0.4
3,153,823	+		IAI47_14950	0.59	-0.3
3,153,877	+		IAI47_14950	0.62	+0.4
3,153,877	+		IAI47_14950	0.62	-1.0
3,153,877	+		IAI47_14950	0.62	+0.7
3,153,878	-		IAI47_14950	0.62	-0.9
3,153,937	+		IAI47_14950	0.66	+1.1
3,153,938	-		IAI47_14950	0.66	-1.5
3,153,940	+		IAI47_14950	0.67	+0.6
3,153,941	-		IAI47_14950	0.67	+0.9
3,153,987	+		IAI47_14950	0.70	-0.4
3,153,987	+		IAI47_14950	0.70	-0.6
3,153,987	+		IAI47_14950	0.70	-1.7
3,153,988	-		IAI47_14950	0.70	+0.8
3,153,988	-		IAI47_14950	0.70	+1.1
3,153,988	-		IAI47_14950	0.70	+0.8
3,153,988	-		IAI47_14950	0.70	-0.6
3,154,016	+		IAI47_14950	0.72	-0.9
3,154,030	+		IAI47_14950	0.72	+0.4
3,154,031	-		IAI47_14950	0.72	+0.4
3,154,055	+		IAI47_14950	0.74	-0.3
3,154,085	+		IAI47_14950	0.76	+2.4
3,154,085	+		IAI47_14950	0.76	+1.2
3,154,085	+		IAI47_14950	0.76	+0.3
3,154,085	+		IAI47_14950	0.76	-0.7
3,154,085	+		IAI47_14950	0.76	-0.3
3,154,085	+		IAI47_14950	0.76	-0.5
3,154,085	+		IAI47_14950	0.76	+0.7
3,154,085	+		IAI47_14950	0.76	+0.6
3,154,086	-		IAI47_14950	0.76	+0.3
3,154,086	-		IAI47_14950	0.76	+0.4
3,154,086	-		IAI47_14950	0.76	+0.7
3,154,086	-		IAI47_14950	0.76	+0.1
3,154,086	-		IAI47_14950	0.76	+0.1
3,154,086	-		IAI47_14950	0.76	+0.1
3,154,086	-		IAI47_14950	0.76	+0.8
3,154,086	-		IAI47_14950	0.76	-1.2
3,154,086	-		IAI47_14950	0.76	+0.1
3,154,086	-		IAI47_14950	0.76	+0.1
3,154,088	+		IAI47_14950	0.76	+0.6
3,154,088	+		IAI47_14950	0.76	+0.7
3,154,088	+		IAI47_14950	0.76	-0.9
3,154,088	+		IAI47_14950	0.76	-0.5
3,154,089	-		IAI47_14950	0.76	-1.5
3,154,089	-		IAI47_14950	0.76	+0.1
3,154,089	-		IAI47_14950	0.76	-0.5
3,154,095	+		IAI47_14950	0.77	-0.3
3,154,095	+		IAI47_14950	0.77	+0.1
3,154,095	+		IAI47_14950	0.77	+1.1
3,154,095	+		IAI47_14950	0.77	-0.5
3,154,095	+		IAI47_14950	0.77	+0.8
3,154,096	-		IAI47_14950	0.77	-1.5
3,154,096	-		IAI47_14950	0.77	-0.7
3,154,096	-		IAI47_14950	0.77	+2.9
3,154,096	-		IAI47_14950	0.77	+0.9
3,154,154	+		IAI47_14950	0.81	+0.7
3,154,155	-		IAI47_14950	0.81	+0.1
3,154,188	+		IAI47_14950	0.83	-1.2
3,154,205	+		IAI47_14950	0.84	-0.6
3,154,255	+		IAI47_14950	0.87	+0.1
3,154,255	+		IAI47_14950	0.87	-0.9
3,154,256	-		IAI47_14950	0.87	-1.3
3,154,368	-				-0.9
3,154,368	-				+0.2
3,154,370	+				+0.6
3,154,370	+				-0.9
3,154,370	+				-0.0
3,154,370	+				+1.1
3,154,370	+				+0.1
3,154,371	-				+1.5
3,154,371	-				-0.4
3,154,371	-				-1.1
3,154,371	-				-0.2
3,154,371	-				+0.1
3,154,371	-				-0.4
3,154,371	-				-1.9
3,154,397	-				+0.1
3,154,443	+				+0.6
3,154,443	+				+0.9
3,154,444	-				-0.5
3,154,480	+				-1.2
3,154,480	+				+1.1
3,154,480	+				-0.1
3,154,480	+				-0.2
3,154,480	+				+1.2
3,154,480	+				+1.1
3,154,481	-				+0.8
3,154,481	-				-1.1
3,154,481	-				+0.1
3,154,481	-				-0.9
3,154,481	-				-0.2
3,154,481	-				+0.7
3,154,517	+				+0.2
3,154,518	-				-0.4
3,154,518	-				-0.1
3,154,526	+				+0.1
3,154,526	+				-0.8
3,154,526	+				-0.1
3,154,527	-				-0.1
3,154,527	-				-0.9
3,154,527	-				+0.9
3,154,527	-				+0.1
3,154,578	+				-0.6
3,154,599	-				+0.1
3,154,599	-				-0.4
3,154,604	-				+0.4
3,154,604	-				+0.5
3,154,604	-				+0.5
3,154,706	-				+0.1
3,154,715	-		IAI47_14955	0.12	-1.7
3,154,828	+		IAI47_14955	0.49	+0.3
3,154,828	+		IAI47_14955	0.49	-1.5
3,154,829	-		IAI47_14955	0.50	-0.7
3,154,968	-				-1.9
3,154,968	-				-2.5
3,154,987	+				-0.6
3,154,987	+				+0.5
3,154,987	+				-0.3
3,154,988	-				+1.1
3,154,988	-				-0.5
3,155,010	+				+1.0
3,155,011	-				-0.1
3,155,011	-				+0.7
3,155,011	-				-0.9
3,155,011	-				+0.4
3,155,013	+				+1.1
3,155,013	+				-0.5
3,155,013	+				+1.0
3,155,014	-				-0.2
3,155,014	-				+0.6
3,155,028	+				+0.3
3,155,029	-				+0.8
3,155,098	+				-0.9
3,155,098	+				-0.5
3,155,099	-				-1.0
3,155,131	+		IAI47_14960	0.15	+0.6
3,155,131	+		IAI47_14960	0.15	+0.0
3,155,131	+		IAI47_14960	0.15	+0.1
3,155,132	-		IAI47_14960	0.15	+0.3
3,155,132	-		IAI47_14960	0.15	-0.4
3,155,132	-		IAI47_14960	0.15	+0.7
3,155,132	-		IAI47_14960	0.15	+0.5
3,155,183	+		IAI47_14960	0.35	-1.5
3,155,183	+		IAI47_14960	0.35	-0.9
3,155,319	+		IAI47_14960	0.88	+0.1
3,155,320	-		IAI47_14960	0.89	-1.5
3,155,320	-		IAI47_14960	0.89	+0.1
3,155,325	+				-0.3
3,155,326	-				+0.7
3,155,382	+		IAI47_14965	0.18	+0.6
3,155,435	+		IAI47_14965	0.46	-0.7
3,155,446	+		IAI47_14965	0.52	-1.2
3,155,517	-		IAI47_14965	0.89	+0.3
3,155,517	-		IAI47_14965	0.89	+1.1
3,155,552	-				-0.9
3,155,563	-				+1.1
3,155,624	+				-1.5
3,155,624	+				+0.3
3,155,624	+				-0.2
3,155,625	-				-0.5
3,155,634	+				-0.7
3,155,634	+				+1.4
3,155,634	+				-0.9
3,155,634	+				+0.1
3,155,634	+				-1.7
3,155,635	-				+0.1
3,155,635	-				-0.4
3,155,635	-				+0.5
3,155,635	-				-0.3
3,155,635	-				+1.0
3,155,646	+				+0.3
3,155,647	-				-0.7
3,155,669	+				-0.1
3,155,669	+				-0.1
3,155,670	-				+0.7
3,155,679	+				+0.6
3,155,679	+				-1.2
3,155,680	-				+1.0
3,155,680	-				+0.9
3,155,684	+				+0.1
3,155,684	+				+1.3
3,155,684	+				+0.4
3,155,684	+				-0.7
3,155,684	+				+0.1
3,155,684	+				-0.9
3,155,684	+				+0.5
3,155,685	-				-0.9
3,155,685	-				+1.9
3,155,685	-				-1.2
3,155,685	-				+0.7
3,155,685	-				-0.0
3,155,685	-				-0.9
3,155,685	-				-0.6
3,155,685	-				-1.5
3,155,685	-				-0.3
3,155,685	-				+1.2
3,155,688	+				-1.2
3,155,688	+				+1.0
3,155,688	+				+1.1
3,155,688	+				+0.1
3,155,688	+				+0.1
3,155,688	+				+0.7
3,155,689	-				-1.3
3,155,689	-				+0.1
3,155,718	+				-0.5
3,155,718	+				+0.7
3,155,718	+				-0.5
3,155,718	+				-1.0
3,155,718	+				-0.9
3,155,718	+				-1.1
3,155,718	+				+0.6
3,155,718	+				+0.3
3,155,718	+				-0.2
3,155,719	-				+0.8
3,155,719	-				-0.7
3,155,719	-				-0.3
3,155,768	+				+0.7
3,155,791	+				-0.5
3,155,791	+				-0.5
3,155,791	+				+0.3
3,155,792	-				-0.5
3,155,792	-				+0.2
3,155,799	+				-1.3
3,155,800	-				+0.7
3,155,800	-				+0.0
3,155,808	+				+1.4
3,155,808	+				+1.2
3,155,808	+				-0.9
3,155,808	+				-0.4
3,155,808	+				+0.5
3,155,809	-				-1.5
3,155,809	-				-0.9
3,155,809	-				+0.7
3,155,818	+				-0.3
3,155,819	-				-0.6
3,155,819	-				-0.5
3,155,845	-				-0.7
3,155,853	+				-0.5
3,155,853	+				-0.3
3,155,854	-				-1.2
3,155,854	-				-1.1
3,155,854	-				+0.2
3,155,854	-				+0.1
3,155,854	-				+0.5
3,155,861	+				-0.1
3,155,884	-				+1.0
3,155,884	-				+0.4
3,155,924	+				+2.3
3,155,931	+				-0.7
3,155,955	+				-1.5
3,155,955	+				+1.0
3,155,956	-				+1.7