Strain Fitness in Pantoea sp. MT58 around IAI47_13535

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
2,870,330	-		IAI47_13530	0.14	-0.9
2,870,370	+		IAI47_13530	0.18	-0.0
2,870,395	+		IAI47_13530	0.20	+1.1
2,870,396	-		IAI47_13530	0.20	+1.3
2,870,396	-		IAI47_13530	0.20	+1.9
2,870,450	+		IAI47_13530	0.25	-0.7
2,870,450	+		IAI47_13530	0.25	+0.9
2,870,450	+		IAI47_13530	0.25	-1.6
2,870,450	+		IAI47_13530	0.25	-0.5
2,870,450	+		IAI47_13530	0.25	-0.0
2,870,450	+		IAI47_13530	0.25	+1.6
2,870,450	+		IAI47_13530	0.25	+2.1
2,870,450	+		IAI47_13530	0.25	+0.1
2,870,451	-		IAI47_13530	0.25	-0.9
2,870,451	-		IAI47_13530	0.25	-0.8
2,870,451	-		IAI47_13530	0.25	-0.8
2,870,451	-		IAI47_13530	0.25	-0.9
2,870,451	-		IAI47_13530	0.25	-0.2
2,870,451	-		IAI47_13530	0.25	-1.4
2,870,451	-		IAI47_13530	0.25	+0.6
2,870,451	-		IAI47_13530	0.25	+1.1
2,870,451	-		IAI47_13530	0.25	-2.0
2,870,451	-		IAI47_13530	0.25	-1.4
2,870,451	-		IAI47_13530	0.25	+0.5
2,870,451	-		IAI47_13530	0.25	+0.1
2,870,539	+		IAI47_13530	0.34	+0.1
2,870,540	-		IAI47_13530	0.34	-0.5
2,870,540	-		IAI47_13530	0.34	-2.7
2,870,540	-		IAI47_13530	0.34	+0.1
2,870,540	-		IAI47_13530	0.34	-0.3
2,870,693	-		IAI47_13530	0.49	-0.0
2,870,701	+		IAI47_13530	0.50	+0.7
2,870,718	+		IAI47_13530	0.51	-1.2
2,870,745	+		IAI47_13530	0.54	+0.4
2,870,745	+		IAI47_13530	0.54	-0.4
2,870,745	+		IAI47_13530	0.54	+1.9
2,870,770	+		IAI47_13530	0.56	+0.1
2,870,771	-		IAI47_13530	0.56	-1.0
2,870,778	+		IAI47_13530	0.57	-0.3
2,870,778	+		IAI47_13530	0.57	-0.3
2,870,778	+		IAI47_13530	0.57	+1.9
2,870,778	+		IAI47_13530	0.57	-0.4
2,870,778	+		IAI47_13530	0.57	+0.1
2,870,778	+		IAI47_13530	0.57	+0.5
2,870,778	+		IAI47_13530	0.57	-0.3
2,870,778	+		IAI47_13530	0.57	+0.7
2,870,779	-		IAI47_13530	0.57	+1.9
2,870,779	-		IAI47_13530	0.57	+1.5
2,870,779	-		IAI47_13530	0.57	-0.1
2,870,779	-		IAI47_13530	0.57	+1.1
2,870,781	+		IAI47_13530	0.57	-1.7
2,870,781	+		IAI47_13530	0.57	+1.4
2,870,781	+		IAI47_13530	0.57	-0.2
2,870,782	-		IAI47_13530	0.57	+0.3
2,871,028	+		IAI47_13530	0.81	-0.6
2,871,029	-		IAI47_13530	0.81	-1.4
2,871,051	+		IAI47_13530	0.84	+0.1
2,871,051	+		IAI47_13530	0.84	+0.8
2,871,052	-		IAI47_13530	0.84	+0.7
2,871,052	-		IAI47_13530	0.84	-0.1
2,871,107	+		IAI47_13530	0.89	-0.4
2,871,107	+		IAI47_13530	0.89	+1.4
2,871,107	+		IAI47_13530	0.89	-0.3
2,871,108	-		IAI47_13530	0.89	+0.7
2,871,108	-		IAI47_13530	0.89	-0.0
2,871,108	-		IAI47_13530	0.89	-0.4
2,871,221	+				+2.2
2,871,221	+				-0.6
2,871,221	+				+1.7
2,871,221	+				-1.2
2,871,222	-				+0.7
2,871,222	-				-0.6
2,871,222	-				+0.1
2,871,222	-				-0.5
2,871,225	+				-0.3
2,871,225	+				-1.1
2,871,225	+				+0.1
2,871,226	-				+0.1
2,871,266	+				+0.1
2,871,266	+				-0.8
2,871,266	+				-0.0
2,871,267	-				+0.7
2,871,312	+				+0.9
2,871,313	-				+0.1
2,871,313	-				-1.4
2,871,313	-				+0.1
2,871,358	-				+0.6
2,871,358	-				-0.4
2,871,358	-				-0.3
2,871,358	-				-0.4
2,871,358	-				-0.2
2,871,370	+				+0.1
2,871,371	-				-0.3
2,871,371	-				-0.2
2,871,371	-				-0.9
2,871,458	+		IAI47_13535	0.12	-0.4
2,871,459	-		IAI47_13535	0.12	+0.1
2,871,459	-		IAI47_13535	0.12	+2.1
2,871,496	+		IAI47_13535	0.14	-0.4
2,871,496	+		IAI47_13535	0.14	-0.0
2,871,497	-		IAI47_13535	0.15	-2.4
2,871,497	-		IAI47_13535	0.15	+0.1
2,871,497	-		IAI47_13535	0.15	-0.9
2,871,498	+		IAI47_13535	0.15	+0.2
2,871,498	+		IAI47_13535	0.15	-0.1
2,871,498	+		IAI47_13535	0.15	-0.7
2,871,498	+		IAI47_13535	0.15	-1.5
2,871,498	+		IAI47_13535	0.15	-0.5
2,871,498	+		IAI47_13535	0.15	-0.3
2,871,498	+		IAI47_13535	0.15	+1.4
2,871,499	-		IAI47_13535	0.15	+0.7
2,871,499	-		IAI47_13535	0.15	-0.2
2,871,499	-		IAI47_13535	0.15	+0.1
2,871,499	-		IAI47_13535	0.15	+0.5
2,871,499	-		IAI47_13535	0.15	+1.1
2,871,698	-		IAI47_13535	0.30	-1.7
2,871,740	+		IAI47_13535	0.33	+1.3
2,871,741	-		IAI47_13535	0.33	+0.4
2,871,762	+		IAI47_13535	0.35	+0.4
2,871,763	-		IAI47_13535	0.35	-2.2
2,871,763	-		IAI47_13535	0.35	+0.4
2,871,763	-		IAI47_13535	0.35	-0.3
2,871,763	-		IAI47_13535	0.35	+0.3
2,871,823	+		IAI47_13535	0.40	+0.5
2,871,824	-		IAI47_13535	0.40	+1.6
2,871,959	+		IAI47_13535	0.50	+1.1
2,871,959	+		IAI47_13535	0.50	-0.9
2,871,959	+		IAI47_13535	0.50	+0.5
2,871,959	+		IAI47_13535	0.50	-0.2
2,871,960	-		IAI47_13535	0.50	-0.2
2,871,960	-		IAI47_13535	0.50	+0.2
2,871,962	+		IAI47_13535	0.50	-1.4
2,871,962	+		IAI47_13535	0.50	+0.1
2,871,962	+		IAI47_13535	0.50	+0.6
2,871,963	-		IAI47_13535	0.50	-1.4
2,871,963	-		IAI47_13535	0.50	+0.5
2,871,963	-		IAI47_13535	0.50	+1.7
2,871,963	-		IAI47_13535	0.50	+0.2
2,871,963	-		IAI47_13535	0.50	-0.3
2,871,963	-		IAI47_13535	0.50	-0.1
2,871,963	-		IAI47_13535	0.50	+2.1
2,871,988	+		IAI47_13535	0.52	+0.5
2,871,988	+		IAI47_13535	0.52	-0.4
2,871,988	+		IAI47_13535	0.52	-0.3
2,871,989	-		IAI47_13535	0.52	+0.7
2,871,989	-		IAI47_13535	0.52	-1.9
2,872,001	-		IAI47_13535	0.53	+0.7
2,872,034	-		IAI47_13535	0.56	+0.8
2,872,126	-		IAI47_13535	0.63	-1.2
2,872,126	-		IAI47_13535	0.63	+2.5
2,872,126	-		IAI47_13535	0.63	+0.8
2,872,127	+		IAI47_13535	0.63	+1.6
2,872,127	+		IAI47_13535	0.63	+0.9
2,872,127	+		IAI47_13535	0.63	-0.1
2,872,127	+		IAI47_13535	0.63	+1.7
2,872,127	+		IAI47_13535	0.63	+1.0
2,872,127	+		IAI47_13535	0.63	+0.1
2,872,127	+		IAI47_13535	0.63	-0.9
2,872,127	+		IAI47_13535	0.63	+0.7
2,872,127	+		IAI47_13535	0.63	+1.9
2,872,127	+		IAI47_13535	0.63	+2.7
2,872,127	+		IAI47_13535	0.63	+0.9
2,872,128	-		IAI47_13535	0.63	+0.4
2,872,128	-		IAI47_13535	0.63	+0.8
2,872,128	-		IAI47_13535	0.63	-0.4
2,872,128	-		IAI47_13535	0.63	-0.6
2,872,128	-		IAI47_13535	0.63	-0.7
2,872,128	-		IAI47_13535	0.63	+0.1
2,872,128	-		IAI47_13535	0.63	+0.1
2,872,128	-		IAI47_13535	0.63	+1.9
2,872,128	-		IAI47_13535	0.63	+0.3
2,872,128	-		IAI47_13535	0.63	-1.8
2,872,128	-		IAI47_13535	0.63	+0.6
2,872,513	+				+1.3
2,872,513	+				+0.1
2,872,514	-				-0.4
2,872,528	+				+0.3
2,872,528	+				-0.2
2,872,528	+				+0.3
2,872,528	+				+1.1
2,872,528	+				-0.5
2,872,529	-				-0.2
2,872,529	-				-1.5
2,872,536	+				+0.4
2,872,537	-				+0.1
2,872,537	-				-0.1
2,872,537	-				+0.1
2,872,572	-				-1.5
2,872,661	+				+3.6
2,872,662	-				+0.1
2,872,699	-				-1.2
2,872,773	+		IAI47_13540	0.18	+0.5
2,872,773	+		IAI47_13540	0.18	+1.5
2,872,773	+		IAI47_13540	0.18	+0.3
2,872,773	+		IAI47_13540	0.18	+1.0
2,872,773	+		IAI47_13540	0.18	+0.5
2,872,773	+		IAI47_13540	0.18	-0.5
2,872,773	+		IAI47_13540	0.18	-0.5
2,872,773	+		IAI47_13540	0.18	+2.1
2,872,774	-		IAI47_13540	0.18	+0.1
2,872,774	-		IAI47_13540	0.18	-0.0
2,872,774	-		IAI47_13540	0.18	+0.1
2,872,774	-		IAI47_13540	0.18	-0.2
2,872,837	+		IAI47_13540	0.31	+0.1
2,872,837	+		IAI47_13540	0.31	-0.7
2,872,837	+		IAI47_13540	0.31	+0.4
2,872,837	+		IAI47_13540	0.31	+0.8
2,872,838	-		IAI47_13540	0.32	+1.7
2,872,993	+		IAI47_13540	0.64	+1.1
2,873,033	-		IAI47_13540	0.73	-0.3
2,873,109	+		IAI47_13540	0.88	-0.9
2,873,109	+		IAI47_13540	0.88	+0.2
2,873,110	-		IAI47_13540	0.89	-0.2
2,873,110	-		IAI47_13540	0.89	+0.3
2,873,156	-				+0.9
2,873,156	-				-2.9
2,873,161	+				-0.7
2,873,161	+				-0.1
2,873,162	-				-0.9
2,873,192	-				-0.5
2,873,220	+				-1.1
2,873,221	-				+0.5
2,873,221	-				-0.8
2,873,225	+				-1.2
2,873,226	-				+0.9
2,873,226	-				-0.6
2,873,407	+				-0.2
2,873,408	-				-1.0
2,873,451	+				-0.2
2,873,451	+				-0.0
2,873,452	-				-0.9
2,873,458	+				-0.6
2,873,475	+				-0.9
2,873,475	+				-1.1
2,873,476	-				-1.2
2,873,495	+				-0.9
2,873,503	+				-0.3
2,873,504	-				-1.5
2,873,504	-				-1.2
2,873,545	+		IAI47_13545	0.14	-2.2
2,873,545	+		IAI47_13545	0.14	+1.1
2,873,546	-		IAI47_13545	0.14	-1.6
2,873,546	-		IAI47_13545	0.14	-2.1