Strain Fitness in Pantoea sp. MT58 around IAI47_12905

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
2,725,946	+		IAI47_12900	0.35	+0.3
2,725,946	+		IAI47_12900	0.35	+0.6
2,725,946	+		IAI47_12900	0.35	+1.1
2,725,947	-		IAI47_12900	0.35	-1.1
2,725,947	-		IAI47_12900	0.35	+0.5
2,725,947	-		IAI47_12900	0.35	+0.4
2,725,947	-		IAI47_12900	0.35	-0.6
2,725,982	+		IAI47_12900	0.38	+0.8
2,725,982	+		IAI47_12900	0.38	-0.3
2,725,988	+		IAI47_12900	0.38	-0.7
2,725,989	-		IAI47_12900	0.39	+0.1
2,726,103	+		IAI47_12900	0.47	-1.5
2,726,103	+		IAI47_12900	0.47	-0.8
2,726,154	+		IAI47_12900	0.51	+2.3
2,726,154	+		IAI47_12900	0.51	-0.3
2,726,155	-		IAI47_12900	0.51	-0.2
2,726,175	+		IAI47_12900	0.52	+0.4
2,726,175	+		IAI47_12900	0.52	-0.9
2,726,202	+		IAI47_12900	0.54	+0.6
2,726,232	+		IAI47_12900	0.57	-0.5
2,726,262	-		IAI47_12900	0.59	+0.8
2,726,274	+		IAI47_12900	0.60	-0.0
2,726,274	+		IAI47_12900	0.60	+1.7
2,726,307	+		IAI47_12900	0.62	-0.4
2,726,307	+		IAI47_12900	0.62	+0.1
2,726,307	+		IAI47_12900	0.62	+1.3
2,726,308	-		IAI47_12900	0.62	+0.0
2,726,336	+		IAI47_12900	0.64	-1.2
2,726,337	-		IAI47_12900	0.64	-0.2
2,726,367	+		IAI47_12900	0.67	-0.4
2,726,403	+		IAI47_12900	0.69	+0.9
2,726,403	+		IAI47_12900	0.69	-0.4
2,726,404	-		IAI47_12900	0.69	+0.2
2,726,490	+		IAI47_12900	0.76	+0.1
2,726,490	+		IAI47_12900	0.76	+0.6
2,726,490	+		IAI47_12900	0.76	+0.4
2,726,491	-		IAI47_12900	0.76	-0.3
2,726,491	-		IAI47_12900	0.76	+0.4
2,726,574	+		IAI47_12900	0.82	-1.8
2,726,575	-		IAI47_12900	0.82	+0.3
2,726,592	+		IAI47_12900	0.83	+1.8
2,726,597	+		IAI47_12900	0.84	-1.2
2,726,597	+		IAI47_12900	0.84	+1.3
2,726,598	-		IAI47_12900	0.84	-0.6
2,726,650	+		IAI47_12900	0.88	-0.2
2,726,651	-		IAI47_12900	0.88	-0.3
2,726,701	-				-1.0
2,726,732	+				-0.4
2,726,732	+				+1.7
2,726,733	-				-0.9
2,726,733	-				+0.5
2,726,733	-				-1.3
2,726,757	+				-0.3
2,726,757	+				+0.1
2,726,757	+				-0.3
2,726,757	+				+0.3
2,726,757	+				+0.4
2,726,758	-				-1.1
2,726,758	-				-0.4
2,726,758	-				-0.5
2,726,758	-				+0.1
2,726,758	-				+0.2
2,726,758	-				-0.6
2,726,808	+				+0.5
2,726,808	+				+0.9
2,727,478	-				+1.3
2,727,535	+				-0.6
2,727,536	-				+0.1
2,727,550	+				-0.0
2,727,590	-				+3.6
2,727,606	+				-0.9
2,727,607	-				+0.1
2,727,607	-				+0.7
2,727,613	+				-0.3
2,727,613	+				+1.6
2,727,613	+				+1.8
2,727,613	+				-0.0
2,727,613	+				+0.1
2,727,614	-				+0.1
2,727,614	-				+1.7
2,727,614	-				+0.4
2,727,614	-				-0.2
2,727,614	-				+0.1
2,727,614	-				+1.1