Strain Fitness in Pantoea sp. MT58 around IAI47_08465

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
1,790,229	+		IAI47_08455	0.78	+1.3
1,790,229	+		IAI47_08455	0.78	+1.9
1,790,229	+		IAI47_08455	0.78	+1.2
1,790,229	+		IAI47_08455	0.78	+1.0
1,790,230	-		IAI47_08455	0.78	+1.0
1,790,230	-		IAI47_08455	0.78	+1.9
1,790,244	-		IAI47_08455	0.80	+0.4
1,790,244	-		IAI47_08455	0.80	+0.9
1,790,302	-		IAI47_08455	0.88	+1.8
1,790,302	-		IAI47_08455	0.88	+1.2
1,790,355	-				+1.5
1,790,369	+				+1.8
1,790,382	-				+1.4
1,790,384	+				+1.0
1,790,385	-				+1.2
1,790,385	-				+1.6
1,790,385	-				+2.0
1,790,427	+				+0.4
1,790,427	+				+0.3
1,790,427	+				+0.6
1,790,428	-				+0.4
1,790,454	+				+0.9
1,790,454	+				+1.4
1,790,568	+		IAI47_08460	0.23	+1.4
1,790,569	-		IAI47_08460	0.23	+0.0
1,790,661	+		IAI47_08460	0.35	+0.6
1,790,662	-		IAI47_08460	0.35	+3.0
1,790,662	-		IAI47_08460	0.35	+0.5
1,790,662	-		IAI47_08460	0.35	+2.9
1,790,662	-		IAI47_08460	0.35	+1.3
1,790,664	+		IAI47_08460	0.36	+1.4
1,790,664	+		IAI47_08460	0.36	+1.5
1,790,664	+		IAI47_08460	0.36	+3.2
1,790,665	-		IAI47_08460	0.36	+1.6
1,790,665	-		IAI47_08460	0.36	+0.4
1,790,665	-		IAI47_08460	0.36	+1.4
1,790,665	-		IAI47_08460	0.36	+0.5
1,790,665	-		IAI47_08460	0.36	+2.1
1,790,665	-		IAI47_08460	0.36	+1.0
1,790,672	+		IAI47_08460	0.37	+0.0
1,790,672	+		IAI47_08460	0.37	+1.5
1,790,672	+		IAI47_08460	0.37	+1.9
1,790,672	+		IAI47_08460	0.37	+1.8
1,790,672	+		IAI47_08460	0.37	+0.3
1,790,673	-		IAI47_08460	0.37	+0.8
1,790,673	-		IAI47_08460	0.37	+1.7
1,790,863	-		IAI47_08460	0.62	+0.6
1,790,863	-		IAI47_08460	0.62	+2.4
1,790,883	+		IAI47_08460	0.65	+2.0
1,790,884	-		IAI47_08460	0.65	+0.6
1,790,893	+		IAI47_08460	0.66	+1.0
1,790,893	+		IAI47_08460	0.66	+1.0
1,790,893	+		IAI47_08460	0.66	-0.5
1,790,893	+		IAI47_08460	0.66	+1.9
1,790,894	-		IAI47_08460	0.66	+3.2
1,790,894	-		IAI47_08460	0.66	+1.0
1,790,894	-		IAI47_08460	0.66	+1.3
1,790,910	+		IAI47_08460	0.68	+1.4
1,790,911	-		IAI47_08460	0.68	+1.0
1,790,911	-		IAI47_08460	0.68	+1.9
1,790,939	+		IAI47_08460	0.72	+1.6
1,790,939	+		IAI47_08460	0.72	+2.0
1,790,939	+		IAI47_08460	0.72	+1.6
1,790,939	+		IAI47_08460	0.72	+2.1
1,790,940	-		IAI47_08460	0.72	+1.2
1,790,940	-		IAI47_08460	0.72	+1.6
1,790,946	+		IAI47_08460	0.73	-0.2
1,790,947	-		IAI47_08460	0.73	+1.8
1,791,109	-				+0.8
1,791,150	+				+1.0
1,791,151	-				+0.7
1,791,151	-				+1.6
1,791,151	-				+1.0
1,791,153	+				+1.0
1,791,154	-				-0.4
1,791,154	-				+1.4
1,791,154	-				+0.2
1,791,154	-				+0.9
1,791,154	-				+0.6
1,791,157	+				+1.7
1,791,157	+				+1.6
1,791,158	-				-0.3
1,791,184	-				+0.0
1,791,185	+				+2.5
1,791,185	+				+1.6
1,791,186	-				+0.4
1,791,227	+				-0.2
1,791,227	+				+0.4
1,791,227	+				+1.3
1,791,228	-				+1.7
1,791,228	-				+2.2
1,791,228	-				+1.8
1,791,228	-				+1.2
1,791,232	+				+1.1
1,791,232	+				+1.5
1,791,232	+				+1.4
1,791,232	+				-0.2
1,791,233	-				+1.4
1,791,239	+				+1.0
1,791,240	-				+0.8
1,791,271	+				+1.4
1,791,271	+				+1.6
1,791,271	+				+2.1
1,791,272	-				+2.2
1,791,286	+				+4.5
1,791,286	+				+1.0
1,791,286	+				+2.2
1,791,341	+		IAI47_08465	0.12	+2.2
1,791,341	+		IAI47_08465	0.12	+2.0
1,791,342	-		IAI47_08465	0.12	+2.6
1,791,460	+		IAI47_08465	0.24	+1.9
1,791,460	+		IAI47_08465	0.24	+1.6
1,791,460	+		IAI47_08465	0.24	+3.4
1,791,460	+		IAI47_08465	0.24	+2.8
1,791,461	-		IAI47_08465	0.25	+1.9
1,791,494	+		IAI47_08465	0.28	+1.4
1,791,568	+		IAI47_08465	0.36	+2.0
1,791,573	-		IAI47_08465	0.36	+2.3
1,791,662	+		IAI47_08465	0.46	+1.4
1,791,663	-		IAI47_08465	0.46	+0.9
1,791,665	+		IAI47_08465	0.46	+1.6
1,791,665	+		IAI47_08465	0.46	-1.3
1,791,665	+		IAI47_08465	0.46	+1.5
1,791,666	-		IAI47_08465	0.46	+1.5
1,791,666	-		IAI47_08465	0.46	+0.0
1,791,666	-		IAI47_08465	0.46	+2.3
1,791,666	-		IAI47_08465	0.46	+1.8
1,791,666	-		IAI47_08465	0.46	+1.3
1,791,666	-		IAI47_08465	0.46	+0.0
1,791,727	+		IAI47_08465	0.53	+3.0
1,791,737	+		IAI47_08465	0.54	+3.7
1,791,738	-		IAI47_08465	0.54	+1.6
1,791,750	-		IAI47_08465	0.55	+2.7
1,791,787	+		IAI47_08465	0.59	+1.8
1,791,787	+		IAI47_08465	0.59	+1.4
1,791,842	+		IAI47_08465	0.65	+1.4
1,791,842	+		IAI47_08465	0.65	+2.8
1,791,843	-		IAI47_08465	0.65	+1.6
1,791,849	+		IAI47_08465	0.66	+2.4
1,791,850	-		IAI47_08465	0.66	+1.6
1,791,850	-		IAI47_08465	0.66	+1.3
1,791,850	-		IAI47_08465	0.66	+2.5
1,791,870	+		IAI47_08465	0.68	+2.6
1,791,870	+		IAI47_08465	0.68	+3.1
1,791,870	+		IAI47_08465	0.68	+2.0
1,791,870	+		IAI47_08465	0.68	+2.1
1,791,871	-		IAI47_08465	0.68	+1.8
1,791,871	-		IAI47_08465	0.68	+1.0
1,791,876	+		IAI47_08465	0.68	+1.8
1,791,876	+		IAI47_08465	0.68	+2.4
1,791,877	-		IAI47_08465	0.68	+1.6
1,791,877	-		IAI47_08465	0.68	+1.8
1,791,877	-		IAI47_08465	0.68	+2.1
1,791,891	+		IAI47_08465	0.70	+1.4
1,791,891	+		IAI47_08465	0.70	+1.3
1,791,892	-		IAI47_08465	0.70	+1.1
1,791,917	+		IAI47_08465	0.73	+1.5
1,791,917	+		IAI47_08465	0.73	+0.3
1,791,955	+		IAI47_08465	0.77	+2.5
1,791,964	+		IAI47_08465	0.78	+1.2
1,792,102	+				+1.5
1,792,102	+				+2.7
1,792,102	+				+1.4
1,792,103	-				+1.2
1,792,116	+				+1.7
1,792,116	+				+1.5
1,792,116	+				+3.8
1,792,116	+				+2.2
1,792,116	+				+2.1
1,792,116	+				+0.2
1,792,117	-				+0.6
1,792,117	-				+0.9
1,792,117	-				+2.2
1,792,117	-				+1.2
1,792,149	+				+1.8
1,792,180	+				-1.5
1,792,180	+				+0.0
1,792,180	+				-0.2
1,792,180	+				-0.8
1,792,184	+				-1.0
1,792,185	-				+0.2
1,792,185	-				+1.3
1,792,200	-				+0.0
1,792,200	-				+2.9
1,792,224	+				+0.4
1,792,224	+				+0.8
1,792,227	+				+1.4
1,792,250	+				+1.5
1,792,251	-				+0.5
1,792,303	+				+0.4
1,792,304	-				-0.2
1,792,309	+				-1.2
1,792,310	-				-3.0
1,792,342	-		IAI47_08470	0.11	+0.5
1,792,342	-		IAI47_08470	0.11	+0.7
1,792,359	+		IAI47_08470	0.13	+0.0
1,792,360	-		IAI47_08470	0.13	+0.0
1,792,360	-		IAI47_08470	0.13	+0.2
1,792,489	+		IAI47_08470	0.23	-1.3
1,792,490	-		IAI47_08470	0.23	-0.5
1,792,534	+		IAI47_08470	0.26	+1.0
1,792,558	-		IAI47_08470	0.28	-1.0
1,792,571	+		IAI47_08470	0.29	+0.5
1,792,590	+		IAI47_08470	0.30	+2.8
1,792,591	-		IAI47_08470	0.30	-0.0
1,792,687	+		IAI47_08470	0.37	+0.5
1,792,687	+		IAI47_08470	0.37	-0.5
1,792,687	+		IAI47_08470	0.37	+0.5
1,792,688	-		IAI47_08470	0.37	+1.0
1,792,688	-		IAI47_08470	0.37	+0.8
1,792,688	-		IAI47_08470	0.37	+2.0
1,792,688	-		IAI47_08470	0.37	-1.1
1,792,688	-		IAI47_08470	0.37	+0.0
1,792,714	-		IAI47_08470	0.39	-0.5
1,792,714	-		IAI47_08470	0.39	-0.1
1,792,757	+		IAI47_08470	0.43	+0.0
1,792,757	+		IAI47_08470	0.43	+0.9
1,792,757	+		IAI47_08470	0.43	+0.5
1,792,758	-		IAI47_08470	0.43	+0.8
1,792,758	-		IAI47_08470	0.43	+0.8
1,792,758	-		IAI47_08470	0.43	+0.5
1,792,926	+		IAI47_08470	0.55	-0.4
1,792,927	-		IAI47_08470	0.55	-1.1
1,792,927	-		IAI47_08470	0.55	-1.0
1,792,927	-		IAI47_08470	0.55	-0.3
1,792,965	+		IAI47_08470	0.58	+0.4
1,792,966	-		IAI47_08470	0.58	-1.0
1,792,981	+		IAI47_08470	0.59	-0.2
1,792,981	+		IAI47_08470	0.59	-0.2
1,792,981	+		IAI47_08470	0.59	+0.6
1,792,982	-		IAI47_08470	0.60	+1.3
1,792,982	-		IAI47_08470	0.60	+0.3
1,792,984	+		IAI47_08470	0.60	+0.0
1,792,984	+		IAI47_08470	0.60	+0.4
1,792,984	+		IAI47_08470	0.60	-1.4
1,792,985	-		IAI47_08470	0.60	+0.7
1,793,014	+		IAI47_08470	0.62	+0.0
1,793,014	+		IAI47_08470	0.62	-0.5
1,793,049	+		IAI47_08470	0.65	+0.3
1,793,067	+		IAI47_08470	0.66	+0.4
1,793,067	+		IAI47_08470	0.66	-0.2
1,793,095	-		IAI47_08470	0.68	-1.0
1,793,109	+		IAI47_08470	0.69	-0.1
1,793,109	+		IAI47_08470	0.69	-1.4
1,793,109	+		IAI47_08470	0.69	-0.3
1,793,140	-		IAI47_08470	0.71	-1.0
1,793,169	+		IAI47_08470	0.74	-0.7