Strain Fitness in Pantoea sp. MT58 around IAI47_06795

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
1,416,508	+		IAI47_06785	0.84	+0.1
1,416,508	+		IAI47_06785	0.84	-0.6
1,416,509	-		IAI47_06785	0.84	-0.5
1,416,509	-		IAI47_06785	0.84	+0.9
1,416,509	-		IAI47_06785	0.84	+0.9
1,416,509	-		IAI47_06785	0.84	+0.3
1,416,509	-		IAI47_06785	0.84	-0.3
1,416,509	-		IAI47_06785	0.84	-0.9
1,416,509	-		IAI47_06785	0.84	-0.0
1,416,535	+				-1.1
1,416,535	+				-0.3
1,416,536	-				+0.4
1,416,563	-				+0.5
1,416,594	-				+1.5
1,416,594	-				+1.3
1,416,606	+				-0.1
1,416,607	-				+1.6
1,416,607	-				+0.3
1,416,607	-				+0.4
1,416,614	+				-0.8
1,416,614	+				-0.5
1,416,615	-				+0.4
1,416,639	+				+0.1
1,416,639	+				+0.1
1,416,640	-				-0.5
1,416,680	-				+0.6
1,416,689	+				+0.1
1,416,690	-				-0.1
1,416,690	-				+1.7
1,416,745	+				+0.8
1,416,767	+				-0.9
1,416,767	+				-0.1
1,416,767	+				+1.1
1,416,768	-				+0.4
1,416,768	-				-1.5
1,416,770	+				+1.1
1,416,770	+				-0.5
1,416,770	+				+1.1
1,416,770	+				+0.4
1,416,770	+				-0.1
1,416,771	-				+0.8
1,416,789	+				+0.9
1,416,794	-				-0.2
1,416,807	+				-0.3
1,416,807	+				+0.4
1,416,833	+				+0.1
1,416,833	+				-1.6
1,416,834	-				-0.5
1,416,834	-				+1.7
1,416,834	-				-0.5
1,416,836	+				-0.2
1,416,836	+				+2.4
1,416,836	+				-0.9
1,416,836	+				-0.5
1,416,898	+		IAI47_06790	0.12	-0.3
1,416,898	+		IAI47_06790	0.12	+0.6
1,416,920	+		IAI47_06790	0.16	-1.6
1,416,942	+		IAI47_06790	0.20	+0.2
1,416,988	+		IAI47_06790	0.28	+1.1
1,416,999	+		IAI47_06790	0.30	+0.1
1,416,999	+		IAI47_06790	0.30	+1.0
1,417,024	+		IAI47_06790	0.35	+0.7
1,417,024	+		IAI47_06790	0.35	-0.3
1,417,024	+		IAI47_06790	0.35	-1.0
1,417,032	+		IAI47_06790	0.36	-3.5
1,417,032	+		IAI47_06790	0.36	+0.1
1,417,058	+		IAI47_06790	0.41	-0.1
1,417,107	+		IAI47_06790	0.49	-0.2
1,417,107	+		IAI47_06790	0.49	+0.6
1,417,107	+		IAI47_06790	0.49	+0.7
1,417,190	+		IAI47_06790	0.64	-0.5
1,417,190	+		IAI47_06790	0.64	+0.1
1,417,190	+		IAI47_06790	0.64	-2.2
1,417,190	+		IAI47_06790	0.64	-0.1
1,417,216	+		IAI47_06790	0.69	-0.3
1,417,216	+		IAI47_06790	0.69	-0.9
1,417,216	+		IAI47_06790	0.69	-0.6
1,417,296	+		IAI47_06790	0.83	-1.2
1,417,456	+				-0.6
1,417,457	-				-0.4
1,417,457	-				+0.1
1,417,462	+				+0.7
1,417,462	+				+0.6
1,417,462	+				-0.9
1,417,462	+				+0.6
1,417,462	+				+0.4
1,417,462	+				-1.0
1,417,462	+				+1.0
1,417,462	+				-1.0
1,417,462	+				-0.2
1,417,463	-				-2.2
1,417,463	-				-0.9
1,417,463	-				+0.1
1,417,463	-				+0.5
1,417,463	-				-1.2
1,417,463	-				+1.3
1,417,499	+				-1.7
1,417,499	+				-0.5
1,417,500	-				-0.1
1,417,512	+				-0.9
1,417,513	-				-0.6
1,417,588	+				+1.1
1,417,645	+		IAI47_06795	0.12	-0.2
1,417,645	+		IAI47_06795	0.12	-0.7
1,417,646	-		IAI47_06795	0.12	-0.4
1,417,646	-		IAI47_06795	0.12	+0.4
1,417,646	-		IAI47_06795	0.12	-0.4
1,417,746	+		IAI47_06795	0.18	-0.4
1,417,747	-		IAI47_06795	0.18	+1.4
1,417,769	-		IAI47_06795	0.20	+0.1
1,417,769	-		IAI47_06795	0.20	+0.1
1,417,832	+		IAI47_06795	0.24	-0.9
1,417,832	+		IAI47_06795	0.24	+1.7
1,417,833	-		IAI47_06795	0.24	+1.5
1,417,833	-		IAI47_06795	0.24	-0.9
1,417,833	-		IAI47_06795	0.24	+0.1
1,417,833	-		IAI47_06795	0.24	-0.7
1,417,833	-		IAI47_06795	0.24	-0.7
1,417,833	-		IAI47_06795	0.24	+1.3
1,417,835	+		IAI47_06795	0.24	+1.1
1,417,835	+		IAI47_06795	0.24	+0.9
1,417,836	-		IAI47_06795	0.24	-0.0
1,417,852	+		IAI47_06795	0.25	+2.4
1,417,852	+		IAI47_06795	0.25	+1.1
1,417,852	+		IAI47_06795	0.25	-0.3
1,417,852	+		IAI47_06795	0.25	-0.0
1,417,853	-		IAI47_06795	0.25	+2.6
1,417,853	-		IAI47_06795	0.25	-1.1
1,417,853	-		IAI47_06795	0.25	-0.4
1,417,985	+		IAI47_06795	0.33	-0.6
1,417,996	+		IAI47_06795	0.34	+1.1
1,417,996	+		IAI47_06795	0.34	+1.5
1,417,997	-		IAI47_06795	0.34	+0.9
1,418,046	+		IAI47_06795	0.37	+0.1
1,418,046	+		IAI47_06795	0.37	+1.8
1,418,047	-		IAI47_06795	0.37	+0.1
1,418,047	-		IAI47_06795	0.37	+0.2
1,418,047	-		IAI47_06795	0.37	+1.0
1,418,047	-		IAI47_06795	0.37	-0.2
1,418,047	-		IAI47_06795	0.37	-1.9
1,418,047	-		IAI47_06795	0.37	-0.6
1,418,050	+		IAI47_06795	0.37	+0.5
1,418,050	+		IAI47_06795	0.37	+1.4
1,418,050	+		IAI47_06795	0.37	-0.0
1,418,050	+		IAI47_06795	0.37	+0.4
1,418,051	-		IAI47_06795	0.38	+1.3
1,418,051	-		IAI47_06795	0.38	+0.9
1,418,051	-		IAI47_06795	0.38	-0.1
1,418,051	-		IAI47_06795	0.38	+0.1
1,418,062	+		IAI47_06795	0.38	-0.1
1,418,099	+		IAI47_06795	0.41	+1.5
1,418,099	+		IAI47_06795	0.41	+1.8
1,418,100	-		IAI47_06795	0.41	+2.7
1,418,150	+		IAI47_06795	0.44	-0.1
1,418,150	+		IAI47_06795	0.44	-1.3
1,418,150	+		IAI47_06795	0.44	+1.0
1,418,150	+		IAI47_06795	0.44	+1.5
1,418,151	-		IAI47_06795	0.44	-0.3
1,418,151	-		IAI47_06795	0.44	-2.2
1,418,151	-		IAI47_06795	0.44	-0.4
1,418,151	-		IAI47_06795	0.44	+0.9
1,418,151	-		IAI47_06795	0.44	-0.7
1,418,162	-		IAI47_06795	0.45	+0.8
1,418,208	+		IAI47_06795	0.48	+0.1
1,418,209	-		IAI47_06795	0.48	-0.1
1,418,234	+		IAI47_06795	0.49	+0.9
1,418,234	+		IAI47_06795	0.49	-1.1
1,418,235	-		IAI47_06795	0.49	+0.1
1,418,235	-		IAI47_06795	0.49	+0.6
1,418,235	-		IAI47_06795	0.49	-0.9
1,418,300	+		IAI47_06795	0.53	+1.7
1,418,300	+		IAI47_06795	0.53	-0.4
1,418,300	+		IAI47_06795	0.53	-0.5
1,418,300	+		IAI47_06795	0.53	-0.1
1,418,300	+		IAI47_06795	0.53	-0.0
1,418,300	+		IAI47_06795	0.53	+0.5
1,418,300	+		IAI47_06795	0.53	+0.0
1,418,300	+		IAI47_06795	0.53	-0.2
1,418,301	-		IAI47_06795	0.54	+2.1
1,418,335	+		IAI47_06795	0.56	+0.6
1,418,336	-		IAI47_06795	0.56	+0.8
1,418,397	+		IAI47_06795	0.60	-0.9
1,418,397	+		IAI47_06795	0.60	-1.2
1,418,397	+		IAI47_06795	0.60	-1.2
1,418,398	-		IAI47_06795	0.60	-1.5
1,418,398	-		IAI47_06795	0.60	+0.7
1,418,413	+		IAI47_06795	0.61	+0.1
1,418,413	+		IAI47_06795	0.61	+2.0
1,418,413	+		IAI47_06795	0.61	-0.5
1,418,492	+		IAI47_06795	0.66	-1.5
1,418,492	+		IAI47_06795	0.66	+0.1
1,418,492	+		IAI47_06795	0.66	+0.7
1,418,493	-		IAI47_06795	0.66	+1.9
1,418,493	-		IAI47_06795	0.66	-1.1
1,418,493	-		IAI47_06795	0.66	+0.8
1,418,533	+		IAI47_06795	0.68	+0.4
1,418,533	+		IAI47_06795	0.68	+1.4
1,418,605	+		IAI47_06795	0.73	+1.4
1,418,605	+		IAI47_06795	0.73	+0.3
1,418,606	-		IAI47_06795	0.73	-1.5
1,418,606	-		IAI47_06795	0.73	+0.5
1,418,606	-		IAI47_06795	0.73	-0.9
1,418,606	-		IAI47_06795	0.73	+0.4
1,418,646	+		IAI47_06795	0.76	+0.1
1,418,646	+		IAI47_06795	0.76	-0.2
1,418,647	-		IAI47_06795	0.76	+0.1
1,418,656	+		IAI47_06795	0.76	+0.8
1,418,656	+		IAI47_06795	0.76	+0.1
1,418,657	-		IAI47_06795	0.76	-0.6
1,418,665	+		IAI47_06795	0.77	-1.5
1,418,665	+		IAI47_06795	0.77	+0.2
1,418,665	+		IAI47_06795	0.77	-0.9
1,418,729	-		IAI47_06795	0.81	-0.9
1,418,729	-		IAI47_06795	0.81	-0.6
1,418,747	+		IAI47_06795	0.82	+0.5
1,418,747	+		IAI47_06795	0.82	-1.9
1,418,747	+		IAI47_06795	0.82	+0.1
1,418,748	-		IAI47_06795	0.82	+0.5
1,418,825	-		IAI47_06795	0.87	+0.7
1,418,825	-		IAI47_06795	0.87	+1.1
1,418,825	-		IAI47_06795	0.87	+0.2
1,418,825	-		IAI47_06795	0.87	-2.2
1,418,884	+				-2.1
1,418,885	-				-1.2
1,418,885	-				+0.1
1,418,885	-				+0.5
1,418,942	+				-1.5
1,418,942	+				-0.8
1,418,943	-				+0.5
1,418,953	+				+0.3
1,418,953	+				-0.3
1,418,953	+				-0.5
1,418,953	+				+0.1
1,418,954	-				-0.0
1,418,954	-				+0.9
1,418,956	+				-0.9
1,418,956	+				-0.9
1,418,956	+				+0.1
1,418,957	-				+0.1
1,418,957	-				-0.7
1,419,002	+				-0.6
1,419,003	-				-0.1
1,419,016	+				+0.0
1,419,016	+				+0.9
1,419,017	-				+1.1
1,419,026	+				-1.1
1,419,026	+				-0.9
1,419,027	-				+0.1
1,419,029	+				+0.6
1,419,029	+				+1.3
1,419,029	+				+0.1
1,419,029	+				+0.8
1,419,029	+				-0.5
1,419,030	-				-0.6
1,419,051	+				-0.2
1,419,052	-				-0.5
1,419,093	+				+0.3
1,419,093	+				-0.1
1,419,093	+				+0.4
1,419,093	+				+0.0
1,419,093	+				+1.7
1,419,093	+				-0.5
1,419,094	-				-0.7
1,419,094	-				+1.9
1,419,094	-				+0.9
1,419,094	-				+0.1
1,419,097	-				-0.2
1,419,097	-				+0.1
1,419,097	-				-0.1
1,419,097	-				-0.3
1,419,196	+		IAI47_06800	0.11	+0.5
1,419,196	+		IAI47_06800	0.11	-1.5
1,419,216	+		IAI47_06800	0.13	-1.0
1,419,217	-		IAI47_06800	0.13	+1.4
1,419,225	-		IAI47_06800	0.14	+0.4
1,419,225	-		IAI47_06800	0.14	-0.9
1,419,262	+		IAI47_06800	0.18	+0.4
1,419,262	+		IAI47_06800	0.18	+1.0
1,419,262	+		IAI47_06800	0.18	+0.3
1,419,262	+		IAI47_06800	0.18	-0.6
1,419,263	-		IAI47_06800	0.18	-0.3
1,419,299	-		IAI47_06800	0.22	+0.8
1,419,305	+		IAI47_06800	0.22	-1.1
1,419,348	+		IAI47_06800	0.27	+1.6
1,419,348	+		IAI47_06800	0.27	-0.3
1,419,348	+		IAI47_06800	0.27	+1.0
1,419,348	+		IAI47_06800	0.27	-0.5
1,419,349	-		IAI47_06800	0.27	-0.8
1,419,359	+		IAI47_06800	0.28	+0.5
1,419,360	-		IAI47_06800	0.28	+1.0
1,419,360	-		IAI47_06800	0.28	+1.2
1,419,443	+		IAI47_06800	0.37	-1.0
1,419,443	+		IAI47_06800	0.37	-0.3
1,419,631	+		IAI47_06800	0.56	+0.8
1,419,631	+		IAI47_06800	0.56	+0.5
1,419,641	+		IAI47_06800	0.57	-0.2
1,419,641	+		IAI47_06800	0.57	-0.1
1,419,641	+		IAI47_06800	0.57	-0.3
1,419,641	+		IAI47_06800	0.57	+1.4
1,419,642	-		IAI47_06800	0.57	+0.4
1,419,713	-		IAI47_06800	0.65	+0.4
1,419,713	-		IAI47_06800	0.65	-1.4
1,419,724	+		IAI47_06800	0.66	+1.3
1,419,724	+		IAI47_06800	0.66	-0.5
1,419,725	-		IAI47_06800	0.66	-0.1
1,419,799	+		IAI47_06800	0.74	-0.2
1,419,834	-		IAI47_06800	0.77	-2.2
1,419,872	-		IAI47_06800	0.81	+0.1
1,419,872	-		IAI47_06800	0.81	+0.3
1,419,879	-		IAI47_06800	0.82	+1.1
1,419,911	-		IAI47_06800	0.85	+0.5
1,419,911	-		IAI47_06800	0.85	-0.5
1,419,976	-				-0.9
1,419,983	+				-1.2
1,419,983	+				+1.1
1,419,983	+				+0.1
1,419,999	-				+1.4
1,419,999	-				+0.8
1,420,028	+				-0.1
1,420,028	+				-0.1