Strain Fitness in Pantoea sp. MT58 around IAI47_05025

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
1,054,913	-				+0.7
1,054,922	+				+0.4
1,054,922	+				+1.1
1,054,922	+				-1.5
1,054,922	+				+0.3
1,054,966	+				+0.5
1,054,966	+				+0.3
1,054,966	+				-1.2
1,054,966	+				+0.7
1,054,967	-				-0.6
1,054,967	-				-0.7
1,054,967	-				+0.8
1,054,967	-				-0.1
1,055,025	+		IAI47_05020	0.14	+0.9
1,055,063	+		IAI47_05020	0.18	+1.1
1,055,064	-		IAI47_05020	0.18	+0.1
1,055,135	+		IAI47_05020	0.27	-0.9
1,055,135	+		IAI47_05020	0.27	+0.7
1,055,135	+		IAI47_05020	0.27	+0.8
1,055,135	+		IAI47_05020	0.27	+2.6
1,055,135	+		IAI47_05020	0.27	+0.7
1,055,135	+		IAI47_05020	0.27	-1.9
1,055,135	+		IAI47_05020	0.27	-0.0
1,055,136	-		IAI47_05020	0.27	+0.4
1,055,136	-		IAI47_05020	0.27	-0.4
1,055,165	+		IAI47_05020	0.30	-0.6
1,055,165	+		IAI47_05020	0.30	-1.7
1,055,165	+		IAI47_05020	0.30	-0.9
1,055,166	-		IAI47_05020	0.30	-0.9
1,055,166	-		IAI47_05020	0.30	-0.6
1,055,211	-		IAI47_05020	0.36	+0.1
1,055,489	+		IAI47_05020	0.69	+2.9
1,055,489	+		IAI47_05020	0.69	-0.9
1,055,490	-		IAI47_05020	0.69	-0.7
1,055,490	-		IAI47_05020	0.69	+1.5
1,055,490	-		IAI47_05020	0.69	-0.5
1,055,549	+		IAI47_05020	0.76	-1.5
1,055,549	+		IAI47_05020	0.76	-0.1
1,055,549	+		IAI47_05020	0.76	-0.5
1,055,549	+		IAI47_05020	0.76	+0.5
1,055,549	+		IAI47_05020	0.76	+0.6
1,055,549	+		IAI47_05020	0.76	+2.1
1,055,549	+		IAI47_05020	0.76	+0.7
1,055,550	-		IAI47_05020	0.76	-0.5
1,055,558	-		IAI47_05020	0.77	-0.3
1,055,588	+		IAI47_05020	0.80	-0.3
1,055,589	-		IAI47_05020	0.80	+1.0
1,055,596	+		IAI47_05020	0.81	-0.9
1,055,596	+		IAI47_05020	0.81	-2.2
1,055,597	-		IAI47_05020	0.81	-1.4
1,055,597	-		IAI47_05020	0.81	-0.0
1,055,597	-		IAI47_05020	0.81	+0.1
1,055,597	-		IAI47_05020	0.81	+0.2
1,055,597	-		IAI47_05020	0.81	-0.0
1,055,610	+		IAI47_05020	0.83	+0.5
1,055,611	-		IAI47_05020	0.83	-0.2
1,055,626	+		IAI47_05020	0.85	+0.2
1,055,626	+		IAI47_05020	0.85	+0.5
1,055,627	-		IAI47_05020	0.85	-0.4
1,055,627	-		IAI47_05020	0.85	+1.3
1,055,627	-		IAI47_05020	0.85	+0.1
1,055,685	+				+2.7
1,055,686	-				+0.2
1,055,707	+				-0.2
1,055,707	+				-0.1
1,055,707	+				-1.6
1,055,707	+				+0.0
1,055,707	+				+0.3
1,055,707	+				-0.2
1,055,708	-				-0.5
1,055,708	-				-0.2
1,055,708	-				-0.6
1,055,708	-				+0.3
1,055,718	+				-0.9
1,055,719	-				-0.5
1,055,753	+				+1.7
1,055,753	+				+0.5
1,055,753	+				+0.4
1,055,754	-				-0.0
1,055,754	-				-0.6
1,055,754	-				+0.1
1,055,754	-				+0.5
1,055,780	+				+0.1
1,055,780	+				+1.0
1,055,780	+				-1.0
1,055,781	-				-0.3
1,055,781	-				-0.9
1,055,826	+				-0.1
1,055,827	-				+0.6
1,055,827	-				-0.3
1,055,827	-				+1.3
1,055,827	-				-0.5
1,055,827	-				-0.2
1,055,843	-				-0.4
1,055,859	+				+0.9
1,055,896	+				+0.2
1,055,896	+				-0.1
1,055,896	+				-0.9
1,055,897	-				-0.2
1,055,967	+				-0.5
1,055,967	+				-0.0
1,055,967	+				-0.6
1,055,967	+				+3.1
1,055,968	-				+1.4
1,055,970	+				-0.5
1,055,970	+				-0.8
1,055,970	+				+1.7
1,055,970	+				+0.1
1,055,971	-				-1.3
1,056,084	+				-0.5
1,056,084	+				-0.6
1,056,084	+				+1.4
1,056,085	-				+0.5
1,056,085	-				+1.6
1,056,110	-				+0.1
1,056,117	-				-0.5
1,056,148	+				-0.1
1,056,149	-				-1.1
1,056,149	-				+0.3
1,056,293	+				+2.7
1,056,294	-				+0.7
1,056,320	-				-0.8
1,056,320	-				-0.6
1,056,320	-				-0.9
1,056,370	+				-0.5
1,056,371	-				-0.1
1,056,371	-				-0.1
1,056,371	-				-0.4
1,056,371	-				-0.2
1,056,371	-				+0.8
1,056,399	+		IAI47_05025	0.10	+0.9
1,056,399	+		IAI47_05025	0.10	-0.2
1,056,436	+		IAI47_05025	0.11	+1.1
1,056,436	+		IAI47_05025	0.11	-1.3
1,056,436	+		IAI47_05025	0.11	-0.9
1,056,436	+		IAI47_05025	0.11	+0.5
1,056,437	-		IAI47_05025	0.11	-0.5
1,056,437	-		IAI47_05025	0.11	-0.1
1,056,477	-		IAI47_05025	0.12	+0.1
1,056,536	+		IAI47_05025	0.13	-0.9
1,056,537	-		IAI47_05025	0.13	-0.1
1,056,556	+		IAI47_05025	0.13	+0.4
1,056,556	+		IAI47_05025	0.13	+1.3
1,056,556	+		IAI47_05025	0.13	+1.0
1,056,557	-		IAI47_05025	0.13	-0.2
1,056,557	-		IAI47_05025	0.13	-0.9
1,056,632	+		IAI47_05025	0.15	-0.4
1,056,632	+		IAI47_05025	0.15	-0.3
1,056,662	+		IAI47_05025	0.16	+1.1
1,056,662	+		IAI47_05025	0.16	+0.1
1,056,663	-		IAI47_05025	0.16	-0.1
1,056,669	-		IAI47_05025	0.16	+0.1
1,056,682	+		IAI47_05025	0.16	+0.5
1,056,980	+		IAI47_05025	0.22	-0.2
1,056,981	-		IAI47_05025	0.22	+2.7
1,056,981	-		IAI47_05025	0.22	-0.6
1,057,015	+		IAI47_05025	0.23	-1.2
1,057,016	-		IAI47_05025	0.23	-1.0
1,057,016	-		IAI47_05025	0.23	+0.8
1,057,016	-		IAI47_05025	0.23	-0.5
1,057,016	-		IAI47_05025	0.23	-0.0
1,057,017	+		IAI47_05025	0.23	-0.8
1,057,019	+		IAI47_05025	0.23	+1.6
1,057,019	+		IAI47_05025	0.23	+0.7
1,057,020	-		IAI47_05025	0.23	-0.3
1,057,020	-		IAI47_05025	0.23	-1.2
1,057,020	-		IAI47_05025	0.23	-0.3
1,057,020	-		IAI47_05025	0.23	+1.5
1,057,020	-		IAI47_05025	0.23	-0.1
1,057,020	-		IAI47_05025	0.23	+1.1
1,057,020	-		IAI47_05025	0.23	+0.2
1,057,166	+		IAI47_05025	0.26	-2.2
1,057,167	-		IAI47_05025	0.26	-0.1
1,057,167	-		IAI47_05025	0.26	+0.9
1,057,215	+		IAI47_05025	0.27	-0.5
1,057,288	+		IAI47_05025	0.28	-0.6
1,057,289	-		IAI47_05025	0.28	-0.1
1,057,289	-		IAI47_05025	0.28	+1.1
1,057,289	-		IAI47_05025	0.28	+0.8
1,057,351	+		IAI47_05025	0.30	-0.6
1,057,352	-		IAI47_05025	0.30	-1.6
1,057,364	+		IAI47_05025	0.30	+0.4
1,057,365	-		IAI47_05025	0.30	+0.5
1,057,365	-		IAI47_05025	0.30	-2.5
1,057,365	-		IAI47_05025	0.30	-0.2
1,057,366	+		IAI47_05025	0.30	-1.8
1,057,370	+		IAI47_05025	0.30	-0.7
1,057,370	+		IAI47_05025	0.30	+0.0
1,057,371	-		IAI47_05025	0.30	-0.5
1,057,371	-		IAI47_05025	0.30	-0.9
1,057,398	+		IAI47_05025	0.31	+0.0
1,057,412	+		IAI47_05025	0.31	+0.6
1,057,412	+		IAI47_05025	0.31	+0.1
1,057,413	-		IAI47_05025	0.31	-0.6
1,057,485	+		IAI47_05025	0.32	+2.1
1,057,485	+		IAI47_05025	0.32	+0.7
1,057,531	+		IAI47_05025	0.33	-0.1
1,057,548	+		IAI47_05025	0.34	+0.5
1,057,709	+		IAI47_05025	0.37	-1.5
1,057,710	-		IAI47_05025	0.37	+1.1
1,057,710	-		IAI47_05025	0.37	+0.9
1,057,715	+		IAI47_05025	0.37	-0.2
1,057,730	+		IAI47_05025	0.37	-0.9
1,057,730	+		IAI47_05025	0.37	-0.6
1,057,730	+		IAI47_05025	0.37	-1.7
1,057,730	+		IAI47_05025	0.37	+0.2
1,057,730	+		IAI47_05025	0.37	-0.7
1,057,730	+		IAI47_05025	0.37	+0.3
1,057,730	+		IAI47_05025	0.37	-0.6
1,057,730	+		IAI47_05025	0.37	+0.9
1,057,731	-		IAI47_05025	0.37	+0.9
1,057,731	-		IAI47_05025	0.37	+1.4
1,057,731	-		IAI47_05025	0.37	-1.7
1,057,731	-		IAI47_05025	0.37	-0.8
1,057,731	-		IAI47_05025	0.37	+0.5
1,057,744	+		IAI47_05025	0.38	+0.4
1,057,784	+		IAI47_05025	0.38	-0.5
1,057,856	+		IAI47_05025	0.40	+1.7
1,057,857	-		IAI47_05025	0.40	-1.0
1,057,857	-		IAI47_05025	0.40	+2.0
1,057,857	-		IAI47_05025	0.40	-0.1
1,057,857	-		IAI47_05025	0.40	-0.4
1,057,857	-		IAI47_05025	0.40	-0.9
1,057,859	+		IAI47_05025	0.40	-1.8
1,057,859	+		IAI47_05025	0.40	-0.5
1,057,859	+		IAI47_05025	0.40	+1.8
1,057,859	+		IAI47_05025	0.40	-0.5
1,057,860	-		IAI47_05025	0.40	+0.1
1,057,860	-		IAI47_05025	0.40	-2.2
1,057,860	-		IAI47_05025	0.40	+1.1
1,057,860	-		IAI47_05025	0.40	-0.2
1,057,860	-		IAI47_05025	0.40	+0.4
1,057,898	+		IAI47_05025	0.41	-1.3
1,057,898	+		IAI47_05025	0.41	-1.1
1,057,899	-		IAI47_05025	0.41	-0.5
1,057,933	+		IAI47_05025	0.42	+0.9
1,057,933	+		IAI47_05025	0.42	-0.2
1,057,934	-		IAI47_05025	0.42	+0.3
1,058,130	-		IAI47_05025	0.46	+0.1
1,058,187	-		IAI47_05025	0.47	+0.2
1,058,187	-		IAI47_05025	0.47	+0.1
1,058,238	+		IAI47_05025	0.48	-0.4
1,058,238	+		IAI47_05025	0.48	+0.1
1,058,238	+		IAI47_05025	0.48	+0.1
1,058,239	-		IAI47_05025	0.48	-0.7
1,058,239	-		IAI47_05025	0.48	-1.0
1,058,300	+		IAI47_05025	0.49	-0.2
1,058,300	+		IAI47_05025	0.49	-0.3
1,058,300	+		IAI47_05025	0.49	-0.4
1,058,311	+		IAI47_05025	0.49	-0.3
1,058,312	-		IAI47_05025	0.49	-0.9
1,058,332	+		IAI47_05025	0.50	+0.9
1,058,370	+		IAI47_05025	0.50	-0.7
1,058,370	+		IAI47_05025	0.50	+0.7
1,058,373	+		IAI47_05025	0.51	+0.0
1,058,373	+		IAI47_05025	0.51	+0.3
1,058,374	-		IAI47_05025	0.51	-0.2
1,058,374	-		IAI47_05025	0.51	-0.1
1,058,374	-		IAI47_05025	0.51	+0.1
1,058,407	-		IAI47_05025	0.51	-0.3
1,058,511	+		IAI47_05025	0.53	-1.9
1,058,511	+		IAI47_05025	0.53	+2.1
1,058,511	+		IAI47_05025	0.53	-0.1
1,058,511	+		IAI47_05025	0.53	-0.0
1,058,511	+		IAI47_05025	0.53	-0.5
1,058,511	+		IAI47_05025	0.53	+0.3
1,058,511	+		IAI47_05025	0.53	-0.9
1,058,511	+		IAI47_05025	0.53	-0.0
1,058,511	+		IAI47_05025	0.53	-0.1
1,058,511	+		IAI47_05025	0.53	+0.7
1,058,511	+		IAI47_05025	0.53	-0.7
1,058,511	+		IAI47_05025	0.53	-0.1
1,058,512	-		IAI47_05025	0.53	+1.2
1,058,512	-		IAI47_05025	0.53	-0.6
1,058,512	-		IAI47_05025	0.53	-1.0
1,058,512	-		IAI47_05025	0.53	-1.1
1,058,512	-		IAI47_05025	0.53	+1.8
1,058,512	-		IAI47_05025	0.53	-0.3
1,058,512	-		IAI47_05025	0.53	-0.5
1,058,512	-		IAI47_05025	0.53	+0.9
1,058,512	-		IAI47_05025	0.53	+1.4
1,058,512	-		IAI47_05025	0.53	+0.3
1,058,557	+		IAI47_05025	0.54	+0.3
1,058,600	+		IAI47_05025	0.55	-0.1
1,058,600	+		IAI47_05025	0.55	+0.1
1,058,600	+		IAI47_05025	0.55	-0.1
1,058,601	-		IAI47_05025	0.55	+0.3
1,058,601	-		IAI47_05025	0.55	-0.7
1,058,615	+		IAI47_05025	0.55	-2.2
1,058,615	+		IAI47_05025	0.55	+0.4
1,058,615	+		IAI47_05025	0.55	-2.2
1,058,615	+		IAI47_05025	0.55	-0.1
1,058,615	+		IAI47_05025	0.55	+0.1
1,058,615	+		IAI47_05025	0.55	+1.0
1,058,616	-		IAI47_05025	0.55	+0.1
1,058,616	-		IAI47_05025	0.55	+0.1
1,058,616	-		IAI47_05025	0.55	-0.9
1,058,616	-		IAI47_05025	0.55	+1.1
1,058,711	-		IAI47_05025	0.57	+0.3
1,058,735	-		IAI47_05025	0.58	-0.3
1,058,791	+		IAI47_05025	0.59	-1.2
1,058,792	-		IAI47_05025	0.59	+0.2
1,058,792	-		IAI47_05025	0.59	+1.8
1,058,854	+		IAI47_05025	0.60	-0.4
1,058,854	+		IAI47_05025	0.60	+0.8
1,058,855	-		IAI47_05025	0.60	-1.1
1,059,021	+		IAI47_05025	0.64	+2.7
1,059,021	+		IAI47_05025	0.64	+1.0
1,059,022	-		IAI47_05025	0.64	-1.5
1,059,076	+		IAI47_05025	0.65	-1.2
1,059,076	+		IAI47_05025	0.65	-0.5
1,059,076	+		IAI47_05025	0.65	-1.1
1,059,077	-		IAI47_05025	0.65	-2.5
1,059,135	+		IAI47_05025	0.66	-1.2
1,059,172	+		IAI47_05025	0.67	+0.1
1,059,173	-		IAI47_05025	0.67	+0.7
1,059,215	+		IAI47_05025	0.68	+0.7
1,059,216	-		IAI47_05025	0.68	-1.2
1,059,247	+		IAI47_05025	0.68	-0.4
1,059,362	+		IAI47_05025	0.71	+2.3
1,059,362	+		IAI47_05025	0.71	+0.6
1,059,362	+		IAI47_05025	0.71	+0.6
1,059,362	+		IAI47_05025	0.71	-0.2
1,059,362	+		IAI47_05025	0.71	-0.5
1,059,362	+		IAI47_05025	0.71	-0.4
1,059,362	+		IAI47_05025	0.71	+0.5
1,059,363	-		IAI47_05025	0.71	+0.4
1,059,363	-		IAI47_05025	0.71	-0.8
1,059,363	-		IAI47_05025	0.71	+0.5
1,059,363	-		IAI47_05025	0.71	-0.3
1,059,363	-		IAI47_05025	0.71	+0.6
1,059,363	-		IAI47_05025	0.71	+0.9
1,059,363	-		IAI47_05025	0.71	-0.0
1,059,363	-		IAI47_05025	0.71	-0.1
1,059,363	-		IAI47_05025	0.71	+1.5
1,059,363	-		IAI47_05025	0.71	-1.3
1,059,363	-		IAI47_05025	0.71	-1.6
1,059,364	+		IAI47_05025	0.71	+2.1
1,059,364	+		IAI47_05025	0.71	-0.9
1,059,365	-		IAI47_05025	0.71	-0.3
1,059,365	-		IAI47_05025	0.71	-0.2
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