Strain Fitness in Pantoea sp. MT58 around IAI47_04125

Experiment: Ying_Nucleobase14 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04120 and IAI47_04125 are separated by 158 nucleotidesIAI47_04125 and IAI47_04130 are separated by 230 nucleotides IAI47_04120: IAI47_04120 - GTP diphosphokinase, at 863,934 to 866,165 _04120 IAI47_04125: IAI47_04125 - nucleoside triphosphate pyrophosphohydrolase, at 866,324 to 867,112 _04125 IAI47_04130: IAI47_04130 - CTP synthase (glutamine hydrolyzing), at 867,343 to 868,980 _04130 Position (kb) 866 867 868Strain fitness (log2 ratio) -2 -1 0 1 2 3at 865.383 kb on + strand, within IAI47_04120at 865.383 kb on + strand, within IAI47_04120at 865.383 kb on + strand, within IAI47_04120at 865.384 kb on - strand, within IAI47_04120at 865.388 kb on + strand, within IAI47_04120at 865.388 kb on + strand, within IAI47_04120at 865.389 kb on - strand, within IAI47_04120at 865.389 kb on - strand, within IAI47_04120at 865.389 kb on - strand, within IAI47_04120at 865.451 kb on + strand, within IAI47_04120at 865.451 kb on + strand, within IAI47_04120at 865.452 kb on - strand, within IAI47_04120at 865.452 kb on - strand, within IAI47_04120at 865.452 kb on - strand, within IAI47_04120at 865.454 kb on + strand, within IAI47_04120at 865.499 kb on + strand, within IAI47_04120at 865.500 kb on - strand, within IAI47_04120at 865.500 kb on - strand, within IAI47_04120at 865.500 kb on - strand, within IAI47_04120at 865.500 kb on - strand, within IAI47_04120at 865.541 kb on + strand, within IAI47_04120at 865.541 kb on + strand, within IAI47_04120at 865.542 kb on - strand, within IAI47_04120at 865.542 kb on - strand, within IAI47_04120at 865.610 kb on + strand, within IAI47_04120at 865.611 kb on - strand, within IAI47_04120at 865.611 kb on - strand, within IAI47_04120at 865.741 kb on + strand, within IAI47_04120at 865.741 kb on + strand, within IAI47_04120at 865.741 kb on + strand, within IAI47_04120at 865.742 kb on - strand, within IAI47_04120at 865.889 kb on + strand, within IAI47_04120at 865.890 kb on - strand, within IAI47_04120at 865.890 kb on - strand, within IAI47_04120at 865.917 kb on + strand, within IAI47_04120at 865.917 kb on + strand, within IAI47_04120at 865.929 kb on + strand, within IAI47_04120at 865.972 kb on + strandat 866.017 kb on + strandat 866.018 kb on - strandat 866.018 kb on - strandat 866.068 kb on - strandat 866.069 kb on + strandat 866.085 kb on + strandat 866.085 kb on + strandat 866.085 kb on + strandat 866.086 kb on - strandat 866.086 kb on - strandat 866.086 kb on - strandat 866.138 kb on + strandat 866.139 kb on - strandat 866.139 kb on - strandat 866.139 kb on - strandat 866.139 kb on - strandat 866.166 kb on + strandat 866.267 kb on - strandat 866.267 kb on - strandat 866.267 kb on - strandat 866.333 kb on - strandat 866.352 kb on + strandat 866.353 kb on - strandat 866.416 kb on + strand, within IAI47_04125at 866.416 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.427 kb on - strand, within IAI47_04125at 866.427 kb on - strand, within IAI47_04125at 866.428 kb on + strand, within IAI47_04125at 866.429 kb on - strand, within IAI47_04125at 866.444 kb on + strand, within IAI47_04125at 866.444 kb on + strand, within IAI47_04125at 866.444 kb on + strand, within IAI47_04125at 866.444 kb on + strand, within IAI47_04125at 866.445 kb on - strand, within IAI47_04125at 866.445 kb on - strand, within IAI47_04125at 866.520 kb on + strand, within IAI47_04125at 866.520 kb on + strand, within IAI47_04125at 866.520 kb on + strand, within IAI47_04125at 866.521 kb on - strand, within IAI47_04125at 866.521 kb on - strand, within IAI47_04125at 866.521 kb on - strand, within IAI47_04125at 866.521 kb on - strand, within IAI47_04125at 866.521 kb on - strand, within IAI47_04125at 866.528 kb on + strand, within IAI47_04125at 866.528 kb on + strand, within IAI47_04125at 866.528 kb on + strand, within IAI47_04125at 866.528 kb on + strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.572 kb on + strand, within IAI47_04125at 866.572 kb on + strand, within IAI47_04125at 866.573 kb on - strand, within IAI47_04125at 866.573 kb on - strand, within IAI47_04125at 866.573 kb on - strand, within IAI47_04125at 866.573 kb on - strand, within IAI47_04125at 866.573 kb on - strand, within IAI47_04125at 866.584 kb on + strand, within IAI47_04125at 866.584 kb on + strand, within IAI47_04125at 866.584 kb on + strand, within IAI47_04125at 866.585 kb on - strand, within IAI47_04125at 866.585 kb on - strand, within IAI47_04125at 866.617 kb on + strand, within IAI47_04125at 866.677 kb on + strand, within IAI47_04125at 867.022 kb on + strand, within IAI47_04125at 867.023 kb on - strand, within IAI47_04125at 867.023 kb on - strand, within IAI47_04125at 867.114 kb on + strandat 867.115 kb on - strandat 867.213 kb on + strandat 867.213 kb on + strandat 867.213 kb on + strandat 867.213 kb on + strandat 867.214 kb on - strandat 867.214 kb on - strandat 867.214 kb on - strandat 867.214 kb on - strandat 867.214 kb on - strandat 867.218 kb on + strandat 867.218 kb on + strandat 867.219 kb on - strandat 867.219 kb on - strandat 867.219 kb on - strandat 867.219 kb on - strandat 867.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3
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865,383 + IAI47_04120 0.65 -0.4
865,383 + IAI47_04120 0.65 -0.7
865,383 + IAI47_04120 0.65 -1.8
865,384 - IAI47_04120 0.65 -0.7
865,388 + IAI47_04120 0.65 -0.4
865,388 + IAI47_04120 0.65 +2.2
865,389 - IAI47_04120 0.65 -0.4
865,389 - IAI47_04120 0.65 +1.0
865,389 - IAI47_04120 0.65 +0.2
865,451 + IAI47_04120 0.68 +0.2
865,451 + IAI47_04120 0.68 +2.5
865,452 - IAI47_04120 0.68 -1.1
865,452 - IAI47_04120 0.68 +0.9
865,452 - IAI47_04120 0.68 +1.2
865,454 + IAI47_04120 0.68 +0.7
865,499 + IAI47_04120 0.70 -0.4
865,500 - IAI47_04120 0.70 -0.6
865,500 - IAI47_04120 0.70 -0.5
865,500 - IAI47_04120 0.70 -0.6
865,500 - IAI47_04120 0.70 -0.5
865,541 + IAI47_04120 0.72 +0.7
865,541 + IAI47_04120 0.72 -1.0
865,542 - IAI47_04120 0.72 -0.6
865,542 - IAI47_04120 0.72 -0.8
865,610 + IAI47_04120 0.75 -0.4
865,611 - IAI47_04120 0.75 +0.7
865,611 - IAI47_04120 0.75 -2.1
865,741 + IAI47_04120 0.81 +0.6
865,741 + IAI47_04120 0.81 +1.0
865,741 + IAI47_04120 0.81 -0.7
865,742 - IAI47_04120 0.81 -1.4
865,889 + IAI47_04120 0.88 -0.4
865,890 - IAI47_04120 0.88 -0.5
865,890 - IAI47_04120 0.88 +1.5
865,917 + IAI47_04120 0.89 -0.8
865,917 + IAI47_04120 0.89 +0.2
865,929 + IAI47_04120 0.89 +0.2
865,972 + -0.8
866,017 + -0.6
866,018 - +0.4
866,018 - +2.6
866,068 - -0.1
866,069 + +0.3
866,085 + +0.7
866,085 + +1.3
866,085 + +0.5
866,086 - -0.6
866,086 - +1.0
866,086 - -1.1
866,138 + -0.4
866,139 - +0.9
866,139 - -0.2
866,139 - +1.2
866,139 - +0.4
866,166 + -0.2
866,267 - +1.1
866,267 - +1.3
866,267 - -0.6
866,333 - +0.2
866,352 + -0.2
866,353 - -1.0
866,416 + IAI47_04125 0.12 -0.0
866,416 + IAI47_04125 0.12 -0.4
866,426 + IAI47_04125 0.13 -0.7
866,426 + IAI47_04125 0.13 -1.1
866,426 + IAI47_04125 0.13 +1.4
866,426 + IAI47_04125 0.13 +0.2
866,426 + IAI47_04125 0.13 +0.9
866,426 + IAI47_04125 0.13 -1.2
866,427 - IAI47_04125 0.13 +0.4
866,427 - IAI47_04125 0.13 -1.4
866,428 + IAI47_04125 0.13 -1.5
866,429 - IAI47_04125 0.13 -0.3
866,444 + IAI47_04125 0.15 +0.5
866,444 + IAI47_04125 0.15 -1.2
866,444 + IAI47_04125 0.15 -0.8
866,444 + IAI47_04125 0.15 -2.6
866,445 - IAI47_04125 0.15 +0.6
866,445 - IAI47_04125 0.15 +0.6
866,520 + IAI47_04125 0.25 +0.7
866,520 + IAI47_04125 0.25 +1.5
866,520 + IAI47_04125 0.25 -0.1
866,521 - IAI47_04125 0.25 -0.8
866,521 - IAI47_04125 0.25 +2.8
866,521 - IAI47_04125 0.25 -0.8
866,521 - IAI47_04125 0.25 +0.4
866,521 - IAI47_04125 0.25 -0.1
866,528 + IAI47_04125 0.26 -0.1
866,528 + IAI47_04125 0.26 -0.7
866,528 + IAI47_04125 0.26 +1.2
866,528 + IAI47_04125 0.26 +0.3
866,529 - IAI47_04125 0.26 -0.6
866,529 - IAI47_04125 0.26 -0.0
866,529 - IAI47_04125 0.26 +0.7
866,529 - IAI47_04125 0.26 +0.5
866,529 - IAI47_04125 0.26 +0.9
866,529 - IAI47_04125 0.26 +0.6
866,572 + IAI47_04125 0.31 -0.3
866,572 + IAI47_04125 0.31 +2.2
866,573 - IAI47_04125 0.32 -1.5
866,573 - IAI47_04125 0.32 -0.5
866,573 - IAI47_04125 0.32 -0.4
866,573 - IAI47_04125 0.32 +1.8
866,573 - IAI47_04125 0.32 +0.2
866,584 + IAI47_04125 0.33 +0.2
866,584 + IAI47_04125 0.33 +0.5
866,584 + IAI47_04125 0.33 +0.2
866,585 - IAI47_04125 0.33 +1.4
866,585 - IAI47_04125 0.33 -1.4
866,617 + IAI47_04125 0.37 +0.9
866,677 + IAI47_04125 0.45 +0.4
867,022 + IAI47_04125 0.88 +0.2
867,023 - IAI47_04125 0.89 -1.0
867,023 - IAI47_04125 0.89 +2.8
867,114 + +1.1
867,115 - -0.1
867,213 + -0.1
867,213 + -0.4
867,213 + -2.1
867,213 + +1.2
867,214 - +1.7
867,214 - -0.9
867,214 - -0.0
867,214 - +2.1
867,214 - -1.0
867,218 + -0.0
867,218 + +1.8
867,219 - +2.3
867,219 - -0.3
867,219 - +0.4
867,219 - +0.3
867,219 - -0.6

Or see this region's nucleotide sequence