Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03790 and IAI47_03795 are separated by 169 nucleotides IAI47_03795 and IAI47_03800 are separated by 49 nucleotides
IAI47_03790: IAI47_03790 - MurR/RpiR family transcriptional regulator, at 791,914 to 792,633
_03790
IAI47_03795: IAI47_03795 - hemolysin III family protein, at 792,803 to 793,468
_03795
IAI47_03800: IAI47_03800 - tRNA-modifying protein YgfZ, at 793,518 to 794,504
_03800
Position (kb) 792
793
794 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 791.803 kb on + strand at 791.803 kb on + strand at 791.803 kb on + strand at 791.803 kb on + strand at 791.804 kb on - strand at 791.811 kb on + strand at 791.837 kb on + strand at 791.837 kb on + strand at 791.837 kb on + strand at 791.838 kb on - strand at 791.838 kb on - strand at 791.838 kb on - strand at 791.838 kb on - strand at 791.848 kb on + strand at 791.863 kb on + strand at 791.863 kb on + strand at 791.864 kb on - strand at 791.864 kb on - strand at 791.865 kb on + strand at 791.865 kb on + strand at 791.865 kb on + strand at 791.866 kb on - strand at 791.866 kb on - strand at 791.866 kb on - strand at 791.866 kb on - strand at 791.866 kb on - strand at 791.883 kb on + strand at 791.884 kb on - strand at 791.892 kb on + strand at 791.892 kb on + strand at 791.892 kb on + strand at 791.892 kb on + strand at 791.893 kb on - strand at 791.893 kb on - strand at 791.893 kb on - strand at 791.936 kb on - strand at 791.936 kb on - strand at 791.946 kb on + strand at 791.947 kb on - strand at 791.947 kb on - strand at 791.947 kb on - strand at 791.947 kb on - strand at 791.947 kb on - strand at 791.949 kb on + strand at 791.949 kb on + strand at 791.949 kb on + strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.950 kb on - strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.951 kb on + strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 791.952 kb on - strand at 792.014 kb on + strand, within IAI47_03790 at 792.014 kb on + strand, within IAI47_03790 at 792.014 kb on + strand, within IAI47_03790 at 792.015 kb on - strand, within IAI47_03790 at 792.015 kb on - strand, within IAI47_03790 at 792.015 kb on - strand, within IAI47_03790 at 792.015 kb on - strand, within IAI47_03790 at 792.015 kb on - strand, within IAI47_03790 at 792.025 kb on - strand, within IAI47_03790 at 792.150 kb on + strand, within IAI47_03790 at 792.150 kb on + strand, within IAI47_03790 at 792.151 kb on - strand, within IAI47_03790 at 792.170 kb on + strand, within IAI47_03790 at 792.170 kb on + strand, within IAI47_03790 at 792.191 kb on + strand, within IAI47_03790 at 792.192 kb on - strand, within IAI47_03790 at 792.192 kb on - strand, within IAI47_03790 at 792.194 kb on + strand, within IAI47_03790 at 792.194 kb on + strand, within IAI47_03790 at 792.194 kb on + strand, within IAI47_03790 at 792.194 kb on + strand, within IAI47_03790 at 792.195 kb on - strand, within IAI47_03790 at 792.223 kb on - strand, within IAI47_03790 at 792.232 kb on - strand, within IAI47_03790 at 792.310 kb on - strand, within IAI47_03790 at 792.354 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.357 kb on + strand, within IAI47_03790 at 792.358 kb on - strand, within IAI47_03790 at 792.358 kb on - strand, within IAI47_03790 at 792.358 kb on - strand, within IAI47_03790 at 792.360 kb on + strand, within IAI47_03790 at 792.361 kb on - strand, within IAI47_03790 at 792.361 kb on - strand, within IAI47_03790 at 792.361 kb on - strand, within IAI47_03790 at 792.361 kb on - strand, within IAI47_03790 at 792.430 kb on + strand, within IAI47_03790 at 792.543 kb on + strand, within IAI47_03790 at 792.543 kb on + strand, within IAI47_03790 at 792.543 kb on + strand, within IAI47_03790 at 792.544 kb on - strand, within IAI47_03790 at 792.544 kb on - strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.545 kb on + strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.546 kb on - strand, within IAI47_03790 at 792.567 kb on + strand at 792.567 kb on + strand at 792.568 kb on - strand at 792.568 kb on - strand at 792.568 kb on - strand at 792.568 kb on - strand at 792.581 kb on + strand at 792.581 kb on + strand at 792.581 kb on + strand at 792.603 kb on + strand at 792.604 kb on - strand at 792.645 kb on + strand at 792.645 kb on + strand at 792.645 kb on + strand at 792.645 kb on + strand at 792.681 kb on + strand at 792.681 kb on + strand at 792.681 kb on + strand at 792.682 kb on - strand at 792.682 kb on - strand at 792.691 kb on - strand at 792.725 kb on + strand at 792.733 kb on + strand at 792.733 kb on + strand at 792.734 kb on - strand at 792.734 kb on - strand at 792.734 kb on - strand at 792.754 kb on + strand at 792.754 kb on + strand at 792.773 kb on + strand at 792.773 kb on + strand at 792.773 kb on + strand at 792.773 kb on + strand at 792.773 kb on + strand at 792.774 kb on - strand at 792.774 kb on - strand at 792.774 kb on - strand at 792.779 kb on + strand at 792.779 kb on + strand at 792.779 kb on + strand at 792.779 kb on + strand at 792.780 kb on - strand at 792.780 kb on - strand at 792.799 kb on + strand at 792.799 kb on + strand at 792.799 kb on + strand at 792.799 kb on + strand at 792.799 kb on + strand at 792.800 kb on - strand at 792.800 kb on - strand at 792.800 kb on - strand at 792.800 kb on - strand at 792.800 kb on - strand at 792.802 kb on + strand at 792.802 kb on + strand at 792.802 kb on + strand at 792.803 kb on - strand at 792.846 kb on - strand at 792.854 kb on - strand at 792.874 kb on + strand, within IAI47_03795 at 792.874 kb on + strand, within IAI47_03795 at 792.875 kb on - strand, within IAI47_03795 at 792.875 kb on - strand, within IAI47_03795 at 792.875 kb on - strand, within IAI47_03795 at 792.875 kb on - strand, within IAI47_03795 at 792.967 kb on + strand, within IAI47_03795 at 792.968 kb on - strand, within IAI47_03795 at 792.968 kb on - strand, within IAI47_03795 at 792.968 kb on - strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.974 kb on + strand, within IAI47_03795 at 792.975 kb on - strand, within IAI47_03795 at 792.975 kb on - strand, within IAI47_03795 at 792.975 kb on - strand, within IAI47_03795 at 792.975 kb on - strand, within IAI47_03795 at 793.026 kb on - strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.088 kb on + strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.089 kb on - strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.109 kb on + strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.110 kb on - strand, within IAI47_03795 at 793.111 kb on + strand, within IAI47_03795 at 793.111 kb on + strand, within IAI47_03795 at 793.111 kb on + strand, within IAI47_03795 at 793.112 kb on - strand, within IAI47_03795 at 793.151 kb on + strand, within IAI47_03795 at 793.151 kb on + strand, within IAI47_03795 at 793.152 kb on - strand, within IAI47_03795 at 793.152 kb on - strand, within IAI47_03795 at 793.152 kb on - strand, within IAI47_03795 at 793.159 kb on - strand, within IAI47_03795 at 793.159 kb on - strand, within IAI47_03795 at 793.192 kb on + strand, within IAI47_03795 at 793.247 kb on + strand, within IAI47_03795 at 793.247 kb on + strand, within IAI47_03795 at 793.247 kb on + strand, within IAI47_03795 at 793.247 kb on + strand, within IAI47_03795 at 793.248 kb on - strand, within IAI47_03795 at 793.248 kb on - strand, within IAI47_03795 at 793.248 kb on - strand, within IAI47_03795 at 793.248 kb on - strand, within IAI47_03795 at 793.283 kb on + strand, within IAI47_03795 at 793.283 kb on + strand, within IAI47_03795 at 793.283 kb on + strand, within IAI47_03795 at 793.283 kb on + strand, within IAI47_03795 at 793.284 kb on - strand, within IAI47_03795 at 793.284 kb on - strand, within IAI47_03795 at 793.284 kb on - strand, within IAI47_03795 at 793.342 kb on + strand, within IAI47_03795 at 793.342 kb on + strand, within IAI47_03795 at 793.342 kb on + strand, within IAI47_03795 at 793.342 kb on + strand, within IAI47_03795 at 793.342 kb on + strand, within IAI47_03795 at 793.343 kb on - strand, within IAI47_03795 at 793.343 kb on - strand, within IAI47_03795 at 793.343 kb on - strand, within IAI47_03795 at 793.346 kb on + strand, within IAI47_03795 at 793.346 kb on + strand, within IAI47_03795 at 793.346 kb on + strand, within IAI47_03795 at 793.346 kb on + strand, within IAI47_03795 at 793.346 kb on + strand, within IAI47_03795 at 793.347 kb on - strand, within IAI47_03795 at 793.367 kb on + strand, within IAI47_03795 at 793.367 kb on + strand, within IAI47_03795 at 793.367 kb on + strand, within IAI47_03795 at 793.368 kb on - strand, within IAI47_03795 at 793.391 kb on - strand, within IAI47_03795 at 793.391 kb on - strand, within IAI47_03795 at 793.391 kb on - strand, within IAI47_03795 at 793.451 kb on + strand at 793.451 kb on + strand at 793.452 kb on - strand at 793.452 kb on - strand at 793.457 kb on + strand at 793.457 kb on + strand at 793.458 kb on - strand at 793.458 kb on - strand at 793.458 kb on - strand at 793.470 kb on + strand at 793.470 kb on + strand at 793.514 kb on + strand at 793.515 kb on - strand at 793.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 791,803 + -0.8 791,803 + -0.0 791,803 + -1.4 791,803 + +0.5 791,804 - +0.8 791,811 + +0.4 791,837 + -1.1 791,837 + -1.3 791,837 + -1.2 791,838 - +0.3 791,838 - -0.2 791,838 - +1.5 791,838 - -0.0 791,848 + -1.6 791,863 + +0.2 791,863 + +0.9 791,864 - -0.1 791,864 - +0.2 791,865 + -0.1 791,865 + -0.8 791,865 + +2.2 791,866 - +0.2 791,866 - -2.2 791,866 - +0.6 791,866 - -0.4 791,866 - +0.9 791,883 + +1.1 791,884 - -0.8 791,892 + -0.2 791,892 + -1.6 791,892 + -0.2 791,892 + +0.8 791,893 - +0.7 791,893 - +0.6 791,893 - -0.1 791,936 - -0.2 791,936 - -0.3 791,946 + +0.7 791,947 - -1.1 791,947 - +1.0 791,947 - +1.2 791,947 - +0.2 791,947 - -0.2 791,949 + +1.2 791,949 + -0.4 791,949 + +0.6 791,950 - +0.5 791,950 - -0.7 791,950 - +0.7 791,950 - -0.4 791,950 - -0.5 791,950 - -0.8 791,950 - +0.9 791,950 - +0.2 791,951 + +0.4 791,951 + +0.2 791,951 + -0.0 791,951 + -0.3 791,951 + +2.5 791,951 + -0.6 791,951 + +0.3 791,952 - +1.2 791,952 - +1.4 791,952 - +0.2 791,952 - -0.2 791,952 - -0.6 791,952 - +0.7 791,952 - +0.5 791,952 - -0.6 791,952 - +0.2 792,014 + IAI47_03790 0.14 +0.9 792,014 + IAI47_03790 0.14 +2.5 792,014 + IAI47_03790 0.14 -1.2 792,015 - IAI47_03790 0.14 +0.4 792,015 - IAI47_03790 0.14 -0.3 792,015 - IAI47_03790 0.14 -0.3 792,015 - IAI47_03790 0.14 -0.2 792,015 - IAI47_03790 0.14 +0.2 792,025 - IAI47_03790 0.15 +1.2 792,150 + IAI47_03790 0.33 +0.8 792,150 + IAI47_03790 0.33 +0.5 792,151 - IAI47_03790 0.33 +1.1 792,170 + IAI47_03790 0.36 -0.4 792,170 + IAI47_03790 0.36 -0.1 792,191 + IAI47_03790 0.38 -1.2 792,192 - IAI47_03790 0.39 -0.8 792,192 - IAI47_03790 0.39 -0.9 792,194 + IAI47_03790 0.39 +1.8 792,194 + IAI47_03790 0.39 +0.2 792,194 + IAI47_03790 0.39 +0.7 792,194 + IAI47_03790 0.39 +2.8 792,195 - IAI47_03790 0.39 -0.2 792,223 - IAI47_03790 0.43 +0.2 792,232 - IAI47_03790 0.44 -0.7 792,310 - IAI47_03790 0.55 +0.4 792,354 + IAI47_03790 0.61 +1.5 792,357 + IAI47_03790 0.62 +0.0 792,357 + IAI47_03790 0.62 +0.1 792,357 + IAI47_03790 0.62 +1.2 792,357 + IAI47_03790 0.62 +0.6 792,357 + IAI47_03790 0.62 +0.9 792,357 + IAI47_03790 0.62 +1.6 792,357 + IAI47_03790 0.62 -1.1 792,358 - IAI47_03790 0.62 +1.2 792,358 - IAI47_03790 0.62 +2.5 792,358 - IAI47_03790 0.62 -1.2 792,360 + IAI47_03790 0.62 +0.4 792,361 - IAI47_03790 0.62 +0.4 792,361 - IAI47_03790 0.62 -0.8 792,361 - IAI47_03790 0.62 +0.6 792,361 - IAI47_03790 0.62 -1.0 792,430 + IAI47_03790 0.72 +0.9 792,543 + IAI47_03790 0.87 -1.4 792,543 + IAI47_03790 0.87 +1.4 792,543 + IAI47_03790 0.87 -3.2 792,544 - IAI47_03790 0.88 -0.2 792,544 - IAI47_03790 0.88 +0.8 792,545 + IAI47_03790 0.88 +0.2 792,545 + IAI47_03790 0.88 -1.1 792,545 + IAI47_03790 0.88 +1.5 792,545 + IAI47_03790 0.88 -0.6 792,545 + IAI47_03790 0.88 +0.9 792,545 + IAI47_03790 0.88 -0.4 792,545 + IAI47_03790 0.88 -0.7 792,545 + IAI47_03790 0.88 -0.2 792,545 + IAI47_03790 0.88 -0.6 792,545 + IAI47_03790 0.88 +0.8 792,545 + IAI47_03790 0.88 -0.6 792,545 + IAI47_03790 0.88 +0.8 792,546 - IAI47_03790 0.88 +0.2 792,546 - IAI47_03790 0.88 +0.2 792,546 - IAI47_03790 0.88 -0.5 792,546 - IAI47_03790 0.88 +1.2 792,546 - IAI47_03790 0.88 +0.5 792,546 - IAI47_03790 0.88 -0.1 792,567 + +0.2 792,567 + +0.2 792,568 - +1.2 792,568 - -0.1 792,568 - -0.5 792,568 - -1.4 792,581 + -0.2 792,581 + +0.4 792,581 + -2.2 792,603 + +0.2 792,604 - +2.5 792,645 + +0.8 792,645 + +2.3 792,645 + +0.8 792,645 + +1.9 792,681 + -0.5 792,681 + -0.1 792,681 + +0.7 792,682 - -0.2 792,682 - -0.0 792,691 - +0.2 792,725 + -0.3 792,733 + -0.5 792,733 + -0.7 792,734 - +0.2 792,734 - +0.8 792,734 - +0.5 792,754 + +0.2 792,754 + -0.1 792,773 + +0.1 792,773 + -0.4 792,773 + -0.6 792,773 + -0.3 792,773 + -0.4 792,774 - +0.2 792,774 - +0.8 792,774 - +1.0 792,779 + -0.5 792,779 + +0.5 792,779 + +0.2 792,779 + +0.5 792,780 - +0.5 792,780 - +2.8 792,799 + +1.8 792,799 + +0.2 792,799 + -0.8 792,799 + +0.6 792,799 + -1.6 792,800 - -1.4 792,800 - +0.9 792,800 - -0.1 792,800 - -0.2 792,800 - -0.0 792,802 + +0.2 792,802 + +0.9 792,802 + +0.3 792,803 - +2.0 792,846 - -0.8 792,854 - -0.2 792,874 + IAI47_03795 0.11 +0.2 792,874 + IAI47_03795 0.11 +1.8 792,875 - IAI47_03795 0.11 +0.2 792,875 - IAI47_03795 0.11 +0.9 792,875 - IAI47_03795 0.11 -0.6 792,875 - IAI47_03795 0.11 -0.2 792,967 + IAI47_03795 0.25 -0.4 792,968 - IAI47_03795 0.25 -0.3 792,968 - IAI47_03795 0.25 -1.1 792,968 - IAI47_03795 0.25 -0.4 792,974 + IAI47_03795 0.26 -0.2 792,974 + IAI47_03795 0.26 -0.6 792,974 + IAI47_03795 0.26 -0.6 792,974 + IAI47_03795 0.26 -1.2 792,974 + IAI47_03795 0.26 +1.6 792,974 + IAI47_03795 0.26 -0.7 792,974 + IAI47_03795 0.26 -0.1 792,975 - IAI47_03795 0.26 -0.5 792,975 - IAI47_03795 0.26 +0.3 792,975 - IAI47_03795 0.26 -0.5 792,975 - IAI47_03795 0.26 +0.9 793,026 - IAI47_03795 0.33 +0.6 793,088 + IAI47_03795 0.43 +0.3 793,088 + IAI47_03795 0.43 -0.0 793,088 + IAI47_03795 0.43 -0.2 793,088 + IAI47_03795 0.43 -1.7 793,088 + IAI47_03795 0.43 +2.5 793,088 + IAI47_03795 0.43 -0.6 793,088 + IAI47_03795 0.43 -0.7 793,088 + IAI47_03795 0.43 -1.4 793,088 + IAI47_03795 0.43 +1.9 793,088 + IAI47_03795 0.43 +0.8 793,089 - IAI47_03795 0.43 -0.8 793,089 - IAI47_03795 0.43 -0.0 793,089 - IAI47_03795 0.43 -0.4 793,089 - IAI47_03795 0.43 +0.4 793,089 - IAI47_03795 0.43 -0.8 793,089 - 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Or see this region's nucleotide sequence