Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03705 and IAI47_03710 are separated by 144 nucleotides IAI47_03710 and IAI47_03715 are separated by 30 nucleotides IAI47_03715 and IAI47_03720 are separated by 181 nucleotides
IAI47_03705: IAI47_03705 - arginine exporter ArgO, at 773,833 to 774,456
_03705
IAI47_03710: IAI47_03710 - oxidative stress defense protein, at 774,601 to 775,326
_03710
IAI47_03715: IAI47_03715 - LysR family transcriptional regulator ArgP, at 775,357 to 776,262
_03715
IAI47_03720: IAI47_03720 - ribose-5-phosphate isomerase RpiA, at 776,444 to 777,103
_03720
Position (kb) 775
776
777 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 774.384 kb on + strand, within IAI47_03705 at 774.385 kb on - strand, within IAI47_03705 at 774.385 kb on - strand, within IAI47_03705 at 774.404 kb on + strand at 774.415 kb on - strand at 774.415 kb on - strand at 774.441 kb on + strand at 774.441 kb on + strand at 774.442 kb on - strand at 774.442 kb on - strand at 774.442 kb on - strand at 774.460 kb on + strand at 774.460 kb on + strand at 774.460 kb on + strand at 774.460 kb on + strand at 774.461 kb on - strand at 774.461 kb on - strand at 774.479 kb on + strand at 774.480 kb on - strand at 774.510 kb on + strand at 774.510 kb on + strand at 774.510 kb on + strand at 774.511 kb on - strand at 774.511 kb on - strand at 774.535 kb on + strand at 774.575 kb on + strand at 774.575 kb on + strand at 774.576 kb on - strand at 774.576 kb on - strand at 774.576 kb on - strand at 774.659 kb on + strand at 774.660 kb on - strand at 774.747 kb on + strand, within IAI47_03710 at 774.747 kb on + strand, within IAI47_03710 at 774.747 kb on + strand, within IAI47_03710 at 774.747 kb on + strand, within IAI47_03710 at 774.748 kb on - strand, within IAI47_03710 at 774.748 kb on - strand, within IAI47_03710 at 774.801 kb on + strand, within IAI47_03710 at 774.802 kb on - strand, within IAI47_03710 at 774.818 kb on - strand, within IAI47_03710 at 774.859 kb on - strand, within IAI47_03710 at 774.859 kb on - strand, within IAI47_03710 at 774.892 kb on + strand, within IAI47_03710 at 774.892 kb on + strand, within IAI47_03710 at 774.898 kb on + strand, within IAI47_03710 at 774.899 kb on - strand, within IAI47_03710 at 774.899 kb on - strand, within IAI47_03710 at 774.912 kb on + strand, within IAI47_03710 at 774.912 kb on + strand, within IAI47_03710 at 774.912 kb on + strand, within IAI47_03710 at 774.920 kb on + strand, within IAI47_03710 at 774.950 kb on + strand, within IAI47_03710 at 774.950 kb on + strand, within IAI47_03710 at 774.950 kb on + strand, within IAI47_03710 at 775.029 kb on + strand, within IAI47_03710 at 775.030 kb on - strand, within IAI47_03710 at 775.030 kb on - strand, within IAI47_03710 at 775.041 kb on - strand, within IAI47_03710 at 775.041 kb on - strand, within IAI47_03710 at 775.041 kb on - strand, within IAI47_03710 at 775.064 kb on - strand, within IAI47_03710 at 775.064 kb on - strand, within IAI47_03710 at 775.064 kb on - strand, within IAI47_03710 at 775.065 kb on + strand, within IAI47_03710 at 775.065 kb on + strand, within IAI47_03710 at 775.066 kb on - strand, within IAI47_03710 at 775.066 kb on - strand, within IAI47_03710 at 775.066 kb on - strand, within IAI47_03710 at 775.092 kb on + strand, within IAI47_03710 at 775.134 kb on + strand, within IAI47_03710 at 775.156 kb on + strand, within IAI47_03710 at 775.157 kb on - strand, within IAI47_03710 at 775.157 kb on - strand, within IAI47_03710 at 775.157 kb on - strand, within IAI47_03710 at 775.183 kb on + strand, within IAI47_03710 at 775.183 kb on + strand, within IAI47_03710 at 775.183 kb on + strand, within IAI47_03710 at 775.184 kb on - strand, within IAI47_03710 at 775.210 kb on + strand, within IAI47_03710 at 775.210 kb on + strand, within IAI47_03710 at 775.210 kb on + strand, within IAI47_03710 at 775.210 kb on + strand, within IAI47_03710 at 775.210 kb on + strand, within IAI47_03710 at 775.210 kb on + strand, within IAI47_03710 at 775.210 kb on + strand, within IAI47_03710 at 775.211 kb on - strand, within IAI47_03710 at 775.233 kb on + strand, within IAI47_03710 at 775.233 kb on + strand, within IAI47_03710 at 775.233 kb on + strand, within IAI47_03710 at 775.234 kb on - strand, within IAI47_03710 at 775.234 kb on - strand, within IAI47_03710 at 775.234 kb on - strand, within IAI47_03710 at 775.234 kb on - strand, within IAI47_03710 at 775.252 kb on + strand, within IAI47_03710 at 775.252 kb on + strand, within IAI47_03710 at 775.252 kb on + strand, within IAI47_03710 at 775.252 kb on + strand, within IAI47_03710 at 775.252 kb on + strand, within IAI47_03710 at 775.252 kb on + strand, within IAI47_03710 at 775.253 kb on - strand, within IAI47_03710 at 775.253 kb on - strand, within IAI47_03710 at 775.253 kb on - strand, within IAI47_03710 at 775.253 kb on - strand, within IAI47_03710 at 775.253 kb on - strand, within IAI47_03710 at 775.253 kb on - strand, within IAI47_03710 at 775.253 kb on - strand, within IAI47_03710 at 775.253 kb on - strand, within IAI47_03710 at 775.253 kb on - strand, within IAI47_03710 at 775.292 kb on + strand at 775.292 kb on + strand at 775.292 kb on + strand at 775.292 kb on + strand at 775.292 kb on + strand at 775.292 kb on + strand at 775.293 kb on - strand at 775.293 kb on - strand at 775.293 kb on - strand at 775.293 kb on - strand at 775.293 kb on - strand at 775.293 kb on - strand at 775.305 kb on + strand at 775.305 kb on + strand at 775.305 kb on + strand at 775.306 kb on - strand at 775.306 kb on - strand at 775.324 kb on + strand at 775.324 kb on + strand at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.501 kb on + strand, within IAI47_03715 at 775.502 kb on - strand, within IAI47_03715 at 775.548 kb on + strand, within IAI47_03715 at 775.548 kb on + strand, within IAI47_03715 at 775.548 kb on + strand, within IAI47_03715 at 775.549 kb on - strand, within IAI47_03715 at 775.549 kb on - strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.827 kb on + strand, within IAI47_03715 at 775.827 kb on + strand, within IAI47_03715 at 775.827 kb on + strand, within IAI47_03715 at 775.828 kb on - strand, within IAI47_03715 at 776.066 kb on - strand, within IAI47_03715 at 776.066 kb on - strand, within IAI47_03715 at 776.175 kb on + strand at 776.175 kb on + strand at 776.176 kb on - strand at 776.176 kb on - strand at 776.176 kb on - strand at 776.264 kb on - strand at 776.264 kb on - strand at 776.264 kb on - strand at 776.266 kb on + strand at 776.266 kb on + strand at 776.267 kb on - strand at 776.267 kb on - strand at 776.267 kb on - strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.296 kb on - strand at 776.296 kb on - strand at 776.311 kb on + strand at 776.311 kb on + strand at 776.312 kb on - strand at 776.312 kb on - strand at 776.356 kb on + strand at 776.357 kb on + strand at 776.357 kb on + strand at 776.401 kb on + strand at 776.401 kb on + strand at 776.402 kb on - strand at 776.402 kb on - strand at 776.402 kb on - strand at 776.403 kb on + strand at 776.403 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.434 kb on + strand at 776.434 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 777.091 kb on + strand at 777.092 kb on - strand at 777.132 kb on - strand at 777.132 kb on - strand at 777.181 kb on + strand at 777.181 kb on + strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.191 kb on - strand at 777.191 kb on - strand at 777.191 kb on - strand at 777.255 kb on + strand at 777.255 kb on + strand at 777.255 kb on + strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 774,384 + IAI47_03705 0.88 +1.3 774,385 - IAI47_03705 0.88 +1.2 774,385 - IAI47_03705 0.88 -0.2 774,404 + +0.7 774,415 - +0.7 774,415 - -0.2 774,441 + +0.4 774,441 + +0.5 774,442 - -0.3 774,442 - +0.4 774,442 - -1.4 774,460 + -0.8 774,460 + +1.5 774,460 + +0.4 774,460 + +1.2 774,461 - +2.1 774,461 - +0.8 774,479 + +0.8 774,480 - -0.0 774,510 + +0.2 774,510 + +0.8 774,510 + -0.0 774,511 - +1.4 774,511 - +1.4 774,535 + +0.5 774,575 + +0.2 774,575 + -1.8 774,576 - -1.6 774,576 - -0.3 774,576 - -0.3 774,659 + +0.0 774,660 - +1.3 774,747 + IAI47_03710 0.20 +0.4 774,747 + IAI47_03710 0.20 +0.2 774,747 + IAI47_03710 0.20 -0.9 774,747 + IAI47_03710 0.20 +0.2 774,748 - IAI47_03710 0.20 -0.8 774,748 - IAI47_03710 0.20 -2.5 774,801 + IAI47_03710 0.28 -0.9 774,802 - IAI47_03710 0.28 -1.0 774,818 - IAI47_03710 0.30 +0.4 774,859 - IAI47_03710 0.36 +0.4 774,859 - IAI47_03710 0.36 +0.2 774,892 + IAI47_03710 0.40 -2.4 774,892 + IAI47_03710 0.40 +1.1 774,898 + IAI47_03710 0.41 -0.8 774,899 - IAI47_03710 0.41 -0.3 774,899 - IAI47_03710 0.41 +0.2 774,912 + IAI47_03710 0.43 -1.3 774,912 + IAI47_03710 0.43 -0.8 774,912 + IAI47_03710 0.43 -0.1 774,920 + IAI47_03710 0.44 +2.5 774,950 + IAI47_03710 0.48 +0.1 774,950 + IAI47_03710 0.48 +0.1 774,950 + IAI47_03710 0.48 +1.4 775,029 + IAI47_03710 0.59 -0.1 775,030 - IAI47_03710 0.59 +0.2 775,030 - IAI47_03710 0.59 -2.4 775,041 - IAI47_03710 0.61 +0.8 775,041 - IAI47_03710 0.61 -0.1 775,041 - IAI47_03710 0.61 +2.5 775,064 - IAI47_03710 0.64 +0.4 775,064 - IAI47_03710 0.64 +0.6 775,064 - IAI47_03710 0.64 -0.6 775,065 + IAI47_03710 0.64 -0.1 775,065 + IAI47_03710 0.64 -0.5 775,066 - IAI47_03710 0.64 -0.1 775,066 - IAI47_03710 0.64 +0.3 775,066 - IAI47_03710 0.64 -0.2 775,092 + IAI47_03710 0.68 -0.2 775,134 + IAI47_03710 0.73 -0.4 775,156 + IAI47_03710 0.76 -0.7 775,157 - IAI47_03710 0.77 -0.2 775,157 - IAI47_03710 0.77 -0.5 775,157 - IAI47_03710 0.77 -0.3 775,183 + IAI47_03710 0.80 +0.6 775,183 + IAI47_03710 0.80 +2.2 775,183 + IAI47_03710 0.80 +0.1 775,184 - IAI47_03710 0.80 +1.8 775,210 + IAI47_03710 0.84 -0.1 775,210 + IAI47_03710 0.84 +0.2 775,210 + IAI47_03710 0.84 +0.2 775,210 + IAI47_03710 0.84 -0.1 775,210 + IAI47_03710 0.84 +1.5 775,210 + IAI47_03710 0.84 +0.2 775,210 + IAI47_03710 0.84 +0.1 775,211 - IAI47_03710 0.84 -0.3 775,233 + IAI47_03710 0.87 +1.2 775,233 + IAI47_03710 0.87 +1.0 775,233 + IAI47_03710 0.87 -1.1 775,234 - IAI47_03710 0.87 -0.7 775,234 - IAI47_03710 0.87 +1.0 775,234 - IAI47_03710 0.87 -0.3 775,234 - IAI47_03710 0.87 -0.2 775,252 + IAI47_03710 0.90 -0.9 775,252 + IAI47_03710 0.90 +1.2 775,252 + IAI47_03710 0.90 -0.6 775,252 + IAI47_03710 0.90 +1.3 775,252 + IAI47_03710 0.90 -0.2 775,252 + IAI47_03710 0.90 -0.8 775,253 - IAI47_03710 0.90 -0.8 775,253 - IAI47_03710 0.90 +2.2 775,253 - IAI47_03710 0.90 +0.2 775,253 - IAI47_03710 0.90 +0.2 775,253 - IAI47_03710 0.90 -1.1 775,253 - IAI47_03710 0.90 +0.1 775,253 - IAI47_03710 0.90 -0.3 775,253 - IAI47_03710 0.90 -0.8 775,253 - IAI47_03710 0.90 +0.7 775,292 + -1.0 775,292 + -1.4 775,292 + +0.1 775,292 + +0.9 775,292 + +0.1 775,292 + +1.8 775,293 - -0.5 775,293 - +1.0 775,293 - +1.1 775,293 - +0.2 775,293 - +0.4 775,293 - -1.7 775,305 + +2.1 775,305 + +0.6 775,305 + -0.3 775,306 - +0.2 775,306 - +0.4 775,324 + -0.4 775,324 + +1.1 775,460 + IAI47_03715 0.11 +0.2 775,460 + IAI47_03715 0.11 -1.7 775,460 + IAI47_03715 0.11 -0.8 775,460 + IAI47_03715 0.11 -0.8 775,460 + IAI47_03715 0.11 +0.6 775,461 - IAI47_03715 0.11 -2.4 775,461 - IAI47_03715 0.11 -1.0 775,461 - IAI47_03715 0.11 -1.4 775,461 - IAI47_03715 0.11 -0.2 775,478 + IAI47_03715 0.13 -0.8 775,478 + IAI47_03715 0.13 -1.1 775,478 + IAI47_03715 0.13 +1.0 775,478 + IAI47_03715 0.13 +1.2 775,478 + IAI47_03715 0.13 -1.5 775,479 - IAI47_03715 0.13 +1.4 775,479 - IAI47_03715 0.13 -2.9 775,479 - IAI47_03715 0.13 -2.1 775,479 - IAI47_03715 0.13 -0.4 775,479 - IAI47_03715 0.13 -1.6 775,479 - IAI47_03715 0.13 -1.1 775,479 - IAI47_03715 0.13 +3.0 775,501 + IAI47_03715 0.16 -0.5 775,502 - IAI47_03715 0.16 +1.2 775,548 + IAI47_03715 0.21 -1.5 775,548 + IAI47_03715 0.21 -0.2 775,548 + IAI47_03715 0.21 -2.8 775,549 - IAI47_03715 0.21 -0.2 775,549 - IAI47_03715 0.21 -1.2 775,665 + IAI47_03715 0.34 -0.2 775,665 + IAI47_03715 0.34 -0.1 775,665 + IAI47_03715 0.34 -0.8 775,665 + IAI47_03715 0.34 -0.5 775,665 + IAI47_03715 0.34 -1.0 775,665 + IAI47_03715 0.34 +0.5 775,665 + IAI47_03715 0.34 -0.8 775,666 - IAI47_03715 0.34 -0.6 775,666 - IAI47_03715 0.34 -0.5 775,666 - IAI47_03715 0.34 -1.3 775,666 - IAI47_03715 0.34 -1.1 775,666 - IAI47_03715 0.34 -2.6 775,666 - IAI47_03715 0.34 -0.1 775,666 - IAI47_03715 0.34 -0.4 775,827 + IAI47_03715 0.52 -0.4 775,827 + IAI47_03715 0.52 -0.2 775,827 + IAI47_03715 0.52 +0.2 775,828 - IAI47_03715 0.52 -0.3 776,066 - IAI47_03715 0.78 -1.4 776,066 - IAI47_03715 0.78 -0.8 776,175 + -0.8 776,175 + -0.5 776,176 - -0.7 776,176 - -0.7 776,176 - +1.8 776,264 - +0.0 776,264 - -0.5 776,264 - +2.2 776,266 + -0.4 776,266 + -0.3 776,267 - -0.5 776,267 - -1.1 776,267 - +2.2 776,295 + +1.0 776,295 + -1.4 776,295 + -1.1 776,295 + -1.3 776,295 + +0.2 776,296 - -1.1 776,296 - +0.6 776,311 + -0.4 776,311 + -0.3 776,312 - +0.9 776,312 - -0.4 776,356 + +0.2 776,357 + -1.4 776,357 + -0.2 776,401 + -1.1 776,401 + -2.3 776,402 - -0.8 776,402 - +0.2 776,402 - -0.8 776,403 + +0.2 776,403 + -2.4 776,406 + -1.0 776,406 + -0.9 776,406 + -0.1 776,406 + -1.9 776,434 + +0.9 776,434 + -1.8 776,440 + +0.2 776,440 + -3.9 776,440 + -1.5 776,440 + -3.5 776,440 + -1.1 777,091 + -0.1 777,092 - -1.4 777,132 - -0.8 777,132 - +2.1 777,181 + -0.2 777,181 + -0.6 777,182 - -2.2 777,182 - -0.0 777,182 - +1.8 777,182 - -0.2 777,182 - -1.4 777,182 - -0.8 777,182 - -0.3 777,182 - -0.7 777,190 + -1.4 777,190 + +2.2 777,190 + -1.4 777,190 + -1.0 777,191 - -1.4 777,191 - -1.0 777,191 - -0.1 777,255 + -0.8 777,255 + -0.4 777,255 + +0.8 777,256 - -1.5 777,256 - +0.7 777,256 - -1.8 777,256 - -1.4 777,256 - +0.4 777,256 - -1.4 777,256 - +0.2 777,256 - -0.2 777,256 - +0.2
Or see this region's nucleotide sequence