Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03195 and IAI47_03200 are separated by 99 nucleotides IAI47_03200 and IAI47_03205 are separated by 204 nucleotides
IAI47_03195: IAI47_03195 - cell division protein FtsP, at 662,188 to 663,618
_03195
IAI47_03200: IAI47_03200 - 2,5-didehydrogluconate reductase DkgA, at 663,718 to 664,542
_03200
IAI47_03205: IAI47_03205 - AraC family transcriptional regulator, at 664,747 to 665,655
_03205
Position (kb) 663
664
665 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 662.852 kb on + strand, within IAI47_03195 at 662.939 kb on + strand, within IAI47_03195 at 662.939 kb on + strand, within IAI47_03195 at 663.050 kb on + strand, within IAI47_03195 at 663.054 kb on + strand, within IAI47_03195 at 663.147 kb on + strand, within IAI47_03195 at 663.148 kb on - strand, within IAI47_03195 at 663.154 kb on - strand, within IAI47_03195 at 663.185 kb on + strand, within IAI47_03195 at 663.551 kb on - strand at 663.616 kb on + strand at 663.616 kb on + strand at 663.616 kb on + strand at 663.616 kb on + strand at 663.657 kb on - strand at 663.657 kb on - strand at 663.660 kb on + strand at 663.660 kb on + strand at 663.660 kb on + strand at 663.661 kb on - strand at 663.661 kb on - strand at 663.661 kb on - strand at 663.667 kb on + strand at 663.668 kb on - strand at 663.668 kb on - strand at 663.668 kb on - strand at 663.668 kb on - strand at 663.668 kb on - strand at 663.692 kb on + strand at 663.692 kb on + strand at 663.692 kb on + strand at 663.692 kb on + strand at 663.693 kb on - strand at 663.719 kb on + strand at 663.719 kb on + strand at 663.719 kb on + strand at 663.719 kb on + strand at 663.719 kb on + strand at 663.720 kb on - strand at 663.720 kb on - strand at 663.720 kb on - strand at 663.720 kb on - strand at 663.720 kb on - strand at 663.723 kb on + strand at 663.723 kb on + strand at 663.723 kb on + strand at 663.723 kb on + strand at 663.723 kb on + strand at 663.724 kb on - strand at 663.724 kb on - strand at 663.774 kb on + strand at 663.774 kb on + strand at 663.775 kb on - strand at 663.792 kb on + strand at 663.793 kb on - strand at 663.816 kb on + strand, within IAI47_03200 at 663.816 kb on + strand, within IAI47_03200 at 663.816 kb on + strand, within IAI47_03200 at 663.817 kb on - strand, within IAI47_03200 at 663.817 kb on - strand, within IAI47_03200 at 663.817 kb on - strand, within IAI47_03200 at 663.918 kb on - strand, within IAI47_03200 at 663.918 kb on - strand, within IAI47_03200 at 663.918 kb on - strand, within IAI47_03200 at 663.918 kb on - strand, within IAI47_03200 at 663.918 kb on - strand, within IAI47_03200 at 663.936 kb on + strand, within IAI47_03200 at 663.936 kb on + strand, within IAI47_03200 at 663.936 kb on + strand, within IAI47_03200 at 663.936 kb on + strand, within IAI47_03200 at 663.936 kb on + strand, within IAI47_03200 at 663.937 kb on - strand, within IAI47_03200 at 663.937 kb on - strand, within IAI47_03200 at 663.937 kb on - strand, within IAI47_03200 at 663.937 kb on - strand, within IAI47_03200 at 664.032 kb on + strand, within IAI47_03200 at 664.032 kb on + strand, within IAI47_03200 at 664.033 kb on - strand, within IAI47_03200 at 664.069 kb on + strand, within IAI47_03200 at 664.070 kb on - strand, within IAI47_03200 at 664.128 kb on + strand, within IAI47_03200 at 664.128 kb on + strand, within IAI47_03200 at 664.129 kb on - strand, within IAI47_03200 at 664.129 kb on - strand, within IAI47_03200 at 664.196 kb on + strand, within IAI47_03200 at 664.196 kb on + strand, within IAI47_03200 at 664.196 kb on + strand, within IAI47_03200 at 664.196 kb on + strand, within IAI47_03200 at 664.196 kb on + strand, within IAI47_03200 at 664.196 kb on + strand, within IAI47_03200 at 664.196 kb on + strand, within IAI47_03200 at 664.196 kb on + strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.197 kb on - strand, within IAI47_03200 at 664.232 kb on + strand, within IAI47_03200 at 664.232 kb on + strand, within IAI47_03200 at 664.232 kb on + strand, within IAI47_03200 at 664.233 kb on - strand, within IAI47_03200 at 664.391 kb on + strand, within IAI47_03200 at 664.392 kb on - strand, within IAI47_03200 at 664.392 kb on - strand, within IAI47_03200 at 664.404 kb on + strand, within IAI47_03200 at 664.419 kb on - strand, within IAI47_03200 at 664.477 kb on + strand at 664.478 kb on - strand at 664.478 kb on - strand at 664.503 kb on + strand at 664.503 kb on + strand at 664.503 kb on + strand at 664.503 kb on + strand at 664.503 kb on + strand at 664.504 kb on - strand at 664.504 kb on - strand at 664.504 kb on - strand at 664.504 kb on - strand at 664.504 kb on - strand at 664.542 kb on + strand at 664.542 kb on + strand at 664.542 kb on + strand at 664.542 kb on + strand at 664.542 kb on + strand at 664.542 kb on + strand at 664.542 kb on + strand at 664.542 kb on + strand at 664.542 kb on + strand at 664.542 kb on + strand at 664.543 kb on - strand at 664.543 kb on - strand at 664.543 kb on - strand at 664.543 kb on - strand at 664.589 kb on + strand at 664.589 kb on + strand at 664.589 kb on + strand at 664.589 kb on + strand at 664.589 kb on + strand at 664.589 kb on + strand at 664.590 kb on - strand at 664.590 kb on - strand at 664.590 kb on - strand at 664.590 kb on - strand at 664.596 kb on - strand at 664.596 kb on - strand at 664.618 kb on + strand at 664.618 kb on + strand at 664.618 kb on + strand at 664.618 kb on + strand at 664.619 kb on - strand at 664.619 kb on - strand at 664.619 kb on - strand at 664.619 kb on - strand at 664.619 kb on - strand at 664.619 kb on - strand at 664.630 kb on + strand at 664.648 kb on + strand at 664.649 kb on - strand at 664.649 kb on - strand at 664.649 kb on - strand at 664.649 kb on - strand at 664.649 kb on - strand at 664.663 kb on - strand at 664.668 kb on + strand at 664.669 kb on - strand at 664.746 kb on + strand at 664.746 kb on + strand at 664.797 kb on - strand at 664.797 kb on - strand at 664.850 kb on - strand, within IAI47_03205 at 664.885 kb on + strand, within IAI47_03205 at 664.885 kb on + strand, within IAI47_03205 at 664.885 kb on + strand, within IAI47_03205 at 664.886 kb on - strand, within IAI47_03205 at 664.886 kb on - strand, within IAI47_03205 at 664.886 kb on - strand, within IAI47_03205 at 664.886 kb on - strand, within IAI47_03205 at 664.886 kb on - strand, within IAI47_03205 at 664.886 kb on - strand, within IAI47_03205 at 664.886 kb on - strand, within IAI47_03205 at 664.886 kb on - strand, within IAI47_03205 at 664.931 kb on - strand, within IAI47_03205 at 664.931 kb on - strand, within IAI47_03205 at 664.954 kb on + strand, within IAI47_03205 at 664.954 kb on + strand, within IAI47_03205 at 664.955 kb on - strand, within IAI47_03205 at 664.955 kb on - strand, within IAI47_03205 at 664.969 kb on + strand, within IAI47_03205 at 664.969 kb on + strand, within IAI47_03205 at 664.969 kb on + strand, within IAI47_03205 at 664.970 kb on - strand, within IAI47_03205 at 665.027 kb on + strand, within IAI47_03205 at 665.028 kb on - strand, within IAI47_03205 at 665.247 kb on + strand, within IAI47_03205 at 665.247 kb on + strand, within IAI47_03205 at 665.248 kb on - strand, within IAI47_03205 at 665.248 kb on - strand, within IAI47_03205 at 665.248 kb on - strand, within IAI47_03205 at 665.251 kb on + strand, within IAI47_03205 at 665.251 kb on + strand, within IAI47_03205 at 665.251 kb on + strand, within IAI47_03205 at 665.251 kb on + strand, within IAI47_03205 at 665.252 kb on - strand, within IAI47_03205 at 665.252 kb on - strand, within IAI47_03205 at 665.252 kb on - strand, within IAI47_03205 at 665.252 kb on - strand, within IAI47_03205 at 665.252 kb on - strand, within IAI47_03205 at 665.252 kb on - strand, within IAI47_03205 at 665.252 kb on - strand, within IAI47_03205 at 665.252 kb on - strand, within IAI47_03205 at 665.252 kb on - strand, within IAI47_03205 at 665.252 kb on - strand, within IAI47_03205 at 665.254 kb on + strand, within IAI47_03205 at 665.254 kb on + strand, within IAI47_03205 at 665.254 kb on + strand, within IAI47_03205 at 665.254 kb on + strand, within IAI47_03205 at 665.254 kb on + strand, within IAI47_03205 at 665.254 kb on + strand, within IAI47_03205 at 665.254 kb on + strand, within IAI47_03205 at 665.254 kb on + strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.255 kb on - strand, within IAI47_03205 at 665.356 kb on + strand, within IAI47_03205 at 665.357 kb on - strand, within IAI47_03205 at 665.357 kb on - strand, within IAI47_03205 at 665.424 kb on + strand, within IAI47_03205 at 665.425 kb on - strand, within IAI47_03205 at 665.456 kb on + strand, within IAI47_03205 at 665.456 kb on + strand, within IAI47_03205 at 665.456 kb on + strand, within IAI47_03205 at 665.456 kb on + strand, within IAI47_03205 at 665.456 kb on + strand, within IAI47_03205 at 665.456 kb on + strand, within IAI47_03205 at 665.456 kb on + strand, within IAI47_03205 at 665.457 kb on - strand, within IAI47_03205 at 665.457 kb on - strand, within IAI47_03205 at 665.457 kb on - strand, within IAI47_03205 at 665.457 kb on - strand, within IAI47_03205 at 665.461 kb on + strand, within IAI47_03205 at 665.461 kb on + strand, within IAI47_03205 at 665.461 kb on + strand, within IAI47_03205 at 665.461 kb on + strand, within IAI47_03205 at 665.461 kb on + strand, within IAI47_03205 at 665.461 kb on + strand, within IAI47_03205 at 665.462 kb on - strand, within IAI47_03205 at 665.462 kb on - strand, within IAI47_03205 at 665.462 kb on - strand, within IAI47_03205 at 665.462 kb on - strand, within IAI47_03205 at 665.462 kb on - strand, within IAI47_03205 at 665.462 kb on - strand, within IAI47_03205
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 662,852 + IAI47_03195 0.46 +0.2 662,939 + IAI47_03195 0.52 +0.8 662,939 + IAI47_03195 0.52 +0.4 663,050 + IAI47_03195 0.60 +1.2 663,054 + IAI47_03195 0.61 -1.4 663,147 + IAI47_03195 0.67 +0.2 663,148 - IAI47_03195 0.67 +0.6 663,154 - IAI47_03195 0.68 +0.8 663,185 + IAI47_03195 0.70 -0.1 663,551 - +0.3 663,616 + +0.4 663,616 + -1.2 663,616 + -0.8 663,616 + +0.4 663,657 - -0.7 663,657 - +1.3 663,660 + -1.1 663,660 + -0.0 663,660 + -0.9 663,661 - -0.5 663,661 - -0.0 663,661 - +1.2 663,667 + -0.2 663,668 - +1.0 663,668 - -1.2 663,668 - +0.7 663,668 - -0.2 663,668 - -1.1 663,692 + -0.1 663,692 + +0.5 663,692 + -0.5 663,692 + +3.2 663,693 - +0.5 663,719 + -0.1 663,719 + +1.9 663,719 + +0.8 663,719 + +0.4 663,719 + +0.2 663,720 - -0.8 663,720 - +0.4 663,720 - -0.2 663,720 - +1.6 663,720 - -0.4 663,723 + -2.4 663,723 + +0.7 663,723 + -0.6 663,723 + -1.4 663,723 + +0.2 663,724 - -0.2 663,724 - +0.3 663,774 + +2.1 663,774 + +1.0 663,775 - +0.7 663,792 + +0.7 663,793 - +0.2 663,816 + IAI47_03200 0.12 +1.0 663,816 + IAI47_03200 0.12 +0.7 663,816 + IAI47_03200 0.12 +0.2 663,817 - IAI47_03200 0.12 -0.5 663,817 - IAI47_03200 0.12 +0.2 663,817 - IAI47_03200 0.12 +0.9 663,918 - IAI47_03200 0.24 -0.8 663,918 - IAI47_03200 0.24 +0.1 663,918 - IAI47_03200 0.24 +0.6 663,918 - IAI47_03200 0.24 -0.4 663,918 - IAI47_03200 0.24 -0.0 663,936 + IAI47_03200 0.26 +0.2 663,936 + IAI47_03200 0.26 +1.0 663,936 + IAI47_03200 0.26 -0.4 663,936 + IAI47_03200 0.26 +0.4 663,936 + IAI47_03200 0.26 -0.2 663,937 - IAI47_03200 0.27 +0.4 663,937 - IAI47_03200 0.27 +0.2 663,937 - IAI47_03200 0.27 +0.8 663,937 - IAI47_03200 0.27 -0.5 664,032 + IAI47_03200 0.38 +0.8 664,032 + IAI47_03200 0.38 +0.2 664,033 - IAI47_03200 0.38 +1.9 664,069 + IAI47_03200 0.43 +0.0 664,070 - IAI47_03200 0.43 -1.1 664,128 + IAI47_03200 0.50 +0.5 664,128 + IAI47_03200 0.50 +1.2 664,129 - IAI47_03200 0.50 +0.4 664,129 - IAI47_03200 0.50 +0.6 664,196 + IAI47_03200 0.58 +0.8 664,196 + IAI47_03200 0.58 -0.3 664,196 + IAI47_03200 0.58 -0.0 664,196 + IAI47_03200 0.58 -0.9 664,196 + IAI47_03200 0.58 -0.6 664,196 + IAI47_03200 0.58 -0.8 664,196 + IAI47_03200 0.58 -0.1 664,196 + IAI47_03200 0.58 +0.2 664,197 - IAI47_03200 0.58 -1.8 664,197 - IAI47_03200 0.58 -0.3 664,197 - IAI47_03200 0.58 +0.2 664,197 - IAI47_03200 0.58 +1.8 664,197 - IAI47_03200 0.58 +0.5 664,197 - IAI47_03200 0.58 -0.4 664,197 - IAI47_03200 0.58 -0.6 664,197 - IAI47_03200 0.58 +0.1 664,197 - IAI47_03200 0.58 -1.1 664,197 - IAI47_03200 0.58 +0.2 664,197 - IAI47_03200 0.58 +0.9 664,197 - IAI47_03200 0.58 -0.7 664,197 - IAI47_03200 0.58 +0.7 664,197 - IAI47_03200 0.58 -1.0 664,197 - IAI47_03200 0.58 +1.3 664,197 - IAI47_03200 0.58 +1.4 664,197 - IAI47_03200 0.58 +0.2 664,232 + IAI47_03200 0.62 -1.1 664,232 + IAI47_03200 0.62 +0.2 664,232 + IAI47_03200 0.62 +0.0 664,233 - IAI47_03200 0.62 -0.3 664,391 + IAI47_03200 0.82 -0.2 664,392 - IAI47_03200 0.82 -1.0 664,392 - IAI47_03200 0.82 -0.2 664,404 + IAI47_03200 0.83 -0.5 664,419 - IAI47_03200 0.85 +0.5 664,477 + -1.2 664,478 - +0.4 664,478 - +0.5 664,503 + +0.2 664,503 + -0.4 664,503 + -1.0 664,503 + +0.7 664,503 + -0.7 664,504 - -0.0 664,504 - +0.9 664,504 - -0.6 664,504 - -0.6 664,504 - +0.6 664,542 + -0.4 664,542 + -0.7 664,542 + -1.0 664,542 + -0.1 664,542 + +2.0 664,542 + +0.2 664,542 + +0.2 664,542 + -0.1 664,542 + -0.8 664,542 + -0.3 664,543 - -0.0 664,543 - +0.7 664,543 - -1.1 664,543 - +0.3 664,589 + +0.9 664,589 + -0.4 664,589 + -0.3 664,589 + +0.3 664,589 + -0.1 664,589 + +1.4 664,590 - -0.2 664,590 - +1.0 664,590 - +0.2 664,590 - -0.4 664,596 - -0.5 664,596 - -0.4 664,618 + +0.9 664,618 + -3.3 664,618 + +0.2 664,618 + +0.5 664,619 - +0.4 664,619 - +1.1 664,619 - -0.0 664,619 - +0.5 664,619 - -3.4 664,619 - -1.4 664,630 + +1.2 664,648 + -0.7 664,649 - -1.2 664,649 - -0.8 664,649 - -0.8 664,649 - -1.6 664,649 - -0.7 664,663 - -0.1 664,668 + +1.2 664,669 - +0.8 664,746 + +1.2 664,746 + +0.4 664,797 - -0.8 664,797 - +0.7 664,850 - IAI47_03205 0.11 +1.1 664,885 + IAI47_03205 0.15 +0.2 664,885 + IAI47_03205 0.15 -0.4 664,885 + IAI47_03205 0.15 +1.4 664,886 - IAI47_03205 0.15 +0.6 664,886 - IAI47_03205 0.15 +1.2 664,886 - IAI47_03205 0.15 +0.1 664,886 - IAI47_03205 0.15 +1.8 664,886 - IAI47_03205 0.15 -0.7 664,886 - IAI47_03205 0.15 +0.3 664,886 - IAI47_03205 0.15 +0.2 664,886 - IAI47_03205 0.15 -0.8 664,931 - IAI47_03205 0.20 -0.2 664,931 - IAI47_03205 0.20 +0.5 664,954 + IAI47_03205 0.23 -0.8 664,954 + IAI47_03205 0.23 +0.2 664,955 - IAI47_03205 0.23 -0.4 664,955 - IAI47_03205 0.23 +0.7 664,969 + IAI47_03205 0.24 -0.7 664,969 + IAI47_03205 0.24 +1.2 664,969 + IAI47_03205 0.24 +1.2 664,970 - IAI47_03205 0.25 -0.2 665,027 + IAI47_03205 0.31 -0.8 665,028 - IAI47_03205 0.31 -0.4 665,247 + IAI47_03205 0.55 +1.2 665,247 + IAI47_03205 0.55 +0.0 665,248 - IAI47_03205 0.55 +1.2 665,248 - IAI47_03205 0.55 +1.6 665,248 - IAI47_03205 0.55 -0.1 665,251 + IAI47_03205 0.55 -1.1 665,251 + IAI47_03205 0.55 +1.4 665,251 + IAI47_03205 0.55 +2.0 665,251 + IAI47_03205 0.55 +0.5 665,252 - IAI47_03205 0.56 -0.1 665,252 - IAI47_03205 0.56 -2.0 665,252 - IAI47_03205 0.56 -0.4 665,252 - IAI47_03205 0.56 -0.6 665,252 - IAI47_03205 0.56 +0.6 665,252 - IAI47_03205 0.56 -1.2 665,252 - IAI47_03205 0.56 +1.2 665,252 - IAI47_03205 0.56 -0.7 665,252 - IAI47_03205 0.56 -1.1 665,252 - IAI47_03205 0.56 +0.8 665,254 + IAI47_03205 0.56 +0.0 665,254 + IAI47_03205 0.56 -1.3 665,254 + IAI47_03205 0.56 -0.6 665,254 + IAI47_03205 0.56 +0.2 665,254 + IAI47_03205 0.56 -0.7 665,254 + IAI47_03205 0.56 +0.8 665,254 + IAI47_03205 0.56 +1.2 665,254 + IAI47_03205 0.56 -0.5 665,255 - IAI47_03205 0.56 -0.8 665,255 - IAI47_03205 0.56 +0.6 665,255 - IAI47_03205 0.56 -0.4 665,255 - IAI47_03205 0.56 -0.4 665,255 - IAI47_03205 0.56 +0.8 665,255 - IAI47_03205 0.56 +0.2 665,255 - IAI47_03205 0.56 -0.4 665,255 - IAI47_03205 0.56 -0.9 665,255 - IAI47_03205 0.56 -1.3 665,255 - IAI47_03205 0.56 -0.1 665,255 - IAI47_03205 0.56 -2.6 665,255 - IAI47_03205 0.56 +0.9 665,255 - IAI47_03205 0.56 -0.0 665,255 - IAI47_03205 0.56 +0.7 665,356 + IAI47_03205 0.67 -2.4 665,357 - IAI47_03205 0.67 +3.0 665,357 - IAI47_03205 0.67 +0.2 665,424 + IAI47_03205 0.74 +0.2 665,425 - IAI47_03205 0.75 -0.8 665,456 + IAI47_03205 0.78 -0.3 665,456 + IAI47_03205 0.78 -0.2 665,456 + IAI47_03205 0.78 +0.8 665,456 + IAI47_03205 0.78 +0.1 665,456 + IAI47_03205 0.78 +0.5 665,456 + IAI47_03205 0.78 -2.3 665,456 + IAI47_03205 0.78 +0.6 665,457 - IAI47_03205 0.78 +1.8 665,457 - IAI47_03205 0.78 -1.0 665,457 - IAI47_03205 0.78 +0.4 665,457 - IAI47_03205 0.78 -0.2 665,461 + IAI47_03205 0.79 -0.1 665,461 + IAI47_03205 0.79 -0.4 665,461 + IAI47_03205 0.79 -0.6 665,461 + IAI47_03205 0.79 -2.1 665,461 + IAI47_03205 0.79 -1.4 665,461 + IAI47_03205 0.79 +0.2 665,462 - IAI47_03205 0.79 -0.6 665,462 - IAI47_03205 0.79 -1.2 665,462 - IAI47_03205 0.79 -2.1 665,462 - IAI47_03205 0.79 +0.9 665,462 - IAI47_03205 0.79 +0.5 665,462 - IAI47_03205 0.79 -0.0
Or see this region's nucleotide sequence