Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02635 and IAI47_02640 overlap by 27 nucleotides IAI47_02640 and IAI47_02645 are separated by 56 nucleotides
IAI47_02635: IAI47_02635 - isovaleryl-CoA dehydrogenase, at 546,378 to 548,006
_02635
IAI47_02640: IAI47_02640 - biofilm peroxide resistance protein BsmA, at 547,980 to 548,306
_02640
IAI47_02645: IAI47_02645 - Cache 3/Cache 2 fusion domain-containing protein, at 548,363 to 550,294
_02645
Position (kb) 547
548
549 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 547.011 kb on + strand, within IAI47_02635 at 547.012 kb on - strand, within IAI47_02635 at 547.028 kb on + strand, within IAI47_02635 at 547.028 kb on + strand, within IAI47_02635 at 547.029 kb on - strand, within IAI47_02635 at 547.029 kb on - strand, within IAI47_02635 at 547.093 kb on + strand, within IAI47_02635 at 547.094 kb on - strand, within IAI47_02635 at 547.094 kb on - strand, within IAI47_02635 at 547.094 kb on - strand, within IAI47_02635 at 547.094 kb on - strand, within IAI47_02635 at 547.166 kb on + strand, within IAI47_02635 at 547.166 kb on + strand, within IAI47_02635 at 547.166 kb on + strand, within IAI47_02635 at 547.166 kb on + strand, within IAI47_02635 at 547.166 kb on + strand, within IAI47_02635 at 547.166 kb on + strand, within IAI47_02635 at 547.167 kb on - strand, within IAI47_02635 at 547.167 kb on - strand, within IAI47_02635 at 547.167 kb on - strand, within IAI47_02635 at 547.366 kb on + strand, within IAI47_02635 at 547.366 kb on + strand, within IAI47_02635 at 547.366 kb on + strand, within IAI47_02635 at 547.367 kb on - strand, within IAI47_02635 at 547.367 kb on - strand, within IAI47_02635 at 547.367 kb on - strand, within IAI47_02635 at 547.367 kb on - strand, within IAI47_02635 at 547.537 kb on - strand, within IAI47_02635 at 547.537 kb on - strand, within IAI47_02635 at 547.632 kb on + strand, within IAI47_02635 at 547.652 kb on + strand, within IAI47_02635 at 547.652 kb on + strand, within IAI47_02635 at 547.652 kb on + strand, within IAI47_02635 at 547.652 kb on + strand, within IAI47_02635 at 547.653 kb on - strand, within IAI47_02635 at 547.653 kb on - strand, within IAI47_02635 at 547.653 kb on - strand, within IAI47_02635 at 547.653 kb on - strand, within IAI47_02635 at 547.735 kb on + strand, within IAI47_02635 at 547.736 kb on - strand, within IAI47_02635 at 547.736 kb on - strand, within IAI47_02635 at 547.736 kb on - strand, within IAI47_02635 at 547.767 kb on - strand, within IAI47_02635 at 547.812 kb on - strand, within IAI47_02635 at 547.882 kb on + strand at 547.882 kb on + strand at 547.882 kb on + strand at 547.883 kb on - strand at 547.883 kb on - strand at 547.883 kb on - strand at 547.883 kb on - strand at 547.890 kb on + strand at 547.891 kb on - strand at 547.891 kb on - strand at 547.891 kb on - strand at 547.891 kb on - strand at 547.971 kb on - strand at 548.014 kb on + strand, within IAI47_02640 at 548.033 kb on - strand, within IAI47_02640 at 548.077 kb on + strand, within IAI47_02640 at 548.078 kb on - strand, within IAI47_02640 at 548.078 kb on - strand, within IAI47_02640 at 548.080 kb on + strand, within IAI47_02640 at 548.081 kb on - strand, within IAI47_02640 at 548.081 kb on - strand, within IAI47_02640 at 548.081 kb on - strand, within IAI47_02640 at 548.081 kb on - strand, within IAI47_02640 at 548.081 kb on - strand, within IAI47_02640 at 548.081 kb on - strand, within IAI47_02640 at 548.145 kb on + strand, within IAI47_02640 at 548.145 kb on + strand, within IAI47_02640 at 548.145 kb on + strand, within IAI47_02640 at 548.145 kb on + strand, within IAI47_02640 at 548.146 kb on - strand, within IAI47_02640 at 548.146 kb on - strand, within IAI47_02640 at 548.146 kb on - strand, within IAI47_02640 at 548.156 kb on + strand, within IAI47_02640 at 548.156 kb on + strand, within IAI47_02640 at 548.156 kb on + strand, within IAI47_02640 at 548.157 kb on - strand, within IAI47_02640 at 548.157 kb on - strand, within IAI47_02640 at 548.160 kb on - strand, within IAI47_02640 at 548.160 kb on - strand, within IAI47_02640 at 548.160 kb on - strand, within IAI47_02640 at 548.160 kb on - strand, within IAI47_02640 at 548.160 kb on - strand, within IAI47_02640 at 548.160 kb on - strand, within IAI47_02640 at 548.160 kb on - strand, within IAI47_02640 at 548.289 kb on + strand at 548.289 kb on + strand at 548.289 kb on + strand at 548.290 kb on - strand at 548.290 kb on - strand at 548.290 kb on - strand at 548.290 kb on - strand at 548.290 kb on - strand at 548.290 kb on - strand at 548.293 kb on + strand at 548.293 kb on + strand at 548.293 kb on + strand at 548.294 kb on - strand at 548.307 kb on - strand at 548.307 kb on - strand at 548.341 kb on + strand at 548.341 kb on + strand at 548.341 kb on + strand at 548.341 kb on + strand at 548.341 kb on + strand at 548.341 kb on + strand at 548.342 kb on - strand at 548.342 kb on - strand at 548.342 kb on - strand at 548.342 kb on - strand at 548.342 kb on - strand at 548.342 kb on - strand at 548.342 kb on - strand at 548.381 kb on + strand at 548.382 kb on - strand at 548.413 kb on + strand at 548.414 kb on - strand at 548.486 kb on - strand at 548.500 kb on + strand at 548.500 kb on + strand at 548.500 kb on + strand at 548.500 kb on + strand at 548.501 kb on - strand at 548.501 kb on - strand at 548.503 kb on + strand at 548.503 kb on + strand at 548.503 kb on + strand at 548.504 kb on - strand at 548.504 kb on - strand at 548.504 kb on - strand at 548.504 kb on - strand at 548.504 kb on - strand at 548.516 kb on - strand at 548.516 kb on - strand at 548.516 kb on - strand at 548.516 kb on - strand at 548.516 kb on - strand at 548.650 kb on + strand, within IAI47_02645 at 548.650 kb on + strand, within IAI47_02645 at 548.651 kb on - strand, within IAI47_02645 at 548.651 kb on - strand, within IAI47_02645 at 548.727 kb on - strand, within IAI47_02645 at 548.833 kb on + strand, within IAI47_02645 at 548.860 kb on + strand, within IAI47_02645 at 548.861 kb on - strand, within IAI47_02645 at 548.875 kb on + strand, within IAI47_02645 at 548.875 kb on + strand, within IAI47_02645 at 548.875 kb on + strand, within IAI47_02645 at 548.875 kb on + strand, within IAI47_02645 at 548.875 kb on + strand, within IAI47_02645 at 548.876 kb on - strand, within IAI47_02645 at 548.876 kb on - strand, within IAI47_02645 at 548.876 kb on - strand, within IAI47_02645 at 548.876 kb on - strand, within IAI47_02645 at 548.876 kb on - strand, within IAI47_02645 at 548.876 kb on - strand, within IAI47_02645 at 548.918 kb on - strand, within IAI47_02645 at 548.918 kb on - strand, within IAI47_02645 at 548.918 kb on - strand, within IAI47_02645 at 549.055 kb on + strand, within IAI47_02645 at 549.055 kb on + strand, within IAI47_02645 at 549.055 kb on + strand, within IAI47_02645 at 549.056 kb on - strand, within IAI47_02645 at 549.056 kb on - strand, within IAI47_02645 at 549.196 kb on + strand, within IAI47_02645 at 549.203 kb on - strand, within IAI47_02645 at 549.228 kb on + strand, within IAI47_02645 at 549.228 kb on + strand, within IAI47_02645 at 549.228 kb on + strand, within IAI47_02645 at 549.228 kb on + strand, within IAI47_02645 at 549.228 kb on + strand, within IAI47_02645 at 549.229 kb on - strand, within IAI47_02645 at 549.229 kb on - strand, within IAI47_02645 at 549.229 kb on - strand, within IAI47_02645 at 549.285 kb on + strand, within IAI47_02645 at 549.285 kb on + strand, within IAI47_02645 at 549.286 kb on - strand, within IAI47_02645 at 549.286 kb on - strand, within IAI47_02645
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 547,011 + IAI47_02635 0.39 -1.4 547,012 - IAI47_02635 0.39 +1.0 547,028 + IAI47_02635 0.40 +0.1 547,028 + IAI47_02635 0.40 -0.5 547,029 - IAI47_02635 0.40 +0.3 547,029 - IAI47_02635 0.40 +2.1 547,093 + IAI47_02635 0.44 -0.2 547,094 - IAI47_02635 0.44 -1.7 547,094 - IAI47_02635 0.44 -0.4 547,094 - IAI47_02635 0.44 +0.1 547,094 - IAI47_02635 0.44 -0.7 547,166 + IAI47_02635 0.48 -1.7 547,166 + IAI47_02635 0.48 +0.7 547,166 + IAI47_02635 0.48 +1.5 547,166 + IAI47_02635 0.48 +2.0 547,166 + IAI47_02635 0.48 -0.6 547,166 + IAI47_02635 0.48 +0.1 547,167 - IAI47_02635 0.48 -0.1 547,167 - IAI47_02635 0.48 -0.9 547,167 - IAI47_02635 0.48 +0.8 547,366 + IAI47_02635 0.61 +0.4 547,366 + IAI47_02635 0.61 +0.3 547,366 + IAI47_02635 0.61 +0.9 547,367 - IAI47_02635 0.61 -0.1 547,367 - IAI47_02635 0.61 +0.3 547,367 - IAI47_02635 0.61 -0.1 547,367 - IAI47_02635 0.61 -0.2 547,537 - IAI47_02635 0.71 +0.7 547,537 - IAI47_02635 0.71 +0.1 547,632 + IAI47_02635 0.77 -2.0 547,652 + IAI47_02635 0.78 +2.1 547,652 + IAI47_02635 0.78 -0.4 547,652 + IAI47_02635 0.78 +0.6 547,652 + IAI47_02635 0.78 -0.3 547,653 - IAI47_02635 0.78 +0.7 547,653 - IAI47_02635 0.78 +0.7 547,653 - IAI47_02635 0.78 +0.3 547,653 - IAI47_02635 0.78 -0.9 547,735 + IAI47_02635 0.83 +2.1 547,736 - IAI47_02635 0.83 +1.7 547,736 - IAI47_02635 0.83 -1.1 547,736 - IAI47_02635 0.83 -1.2 547,767 - IAI47_02635 0.85 -0.1 547,812 - IAI47_02635 0.88 -1.2 547,882 + -2.2 547,882 + +0.7 547,882 + -0.3 547,883 - -0.5 547,883 - -0.9 547,883 - -2.0 547,883 - +0.5 547,890 + -0.7 547,891 - +2.5 547,891 - +1.3 547,891 - -0.4 547,891 - +1.0 547,971 - -0.1 548,014 + IAI47_02640 0.10 -0.6 548,033 - IAI47_02640 0.16 +1.0 548,077 + IAI47_02640 0.30 -0.9 548,078 - IAI47_02640 0.30 +0.4 548,078 - IAI47_02640 0.30 -0.4 548,080 + IAI47_02640 0.31 +1.0 548,081 - IAI47_02640 0.31 +0.7 548,081 - IAI47_02640 0.31 -1.0 548,081 - IAI47_02640 0.31 -1.7 548,081 - IAI47_02640 0.31 +0.1 548,081 - IAI47_02640 0.31 -0.9 548,081 - IAI47_02640 0.31 +0.5 548,145 + IAI47_02640 0.50 -1.4 548,145 + IAI47_02640 0.50 -0.4 548,145 + IAI47_02640 0.50 +0.3 548,145 + IAI47_02640 0.50 -1.6 548,146 - IAI47_02640 0.51 +0.4 548,146 - IAI47_02640 0.51 -0.2 548,146 - IAI47_02640 0.51 -0.4 548,156 + IAI47_02640 0.54 +1.1 548,156 + IAI47_02640 0.54 -0.0 548,156 + IAI47_02640 0.54 +0.7 548,157 - IAI47_02640 0.54 -0.1 548,157 - IAI47_02640 0.54 +2.1 548,160 - IAI47_02640 0.55 +0.1 548,160 - IAI47_02640 0.55 +0.1 548,160 - IAI47_02640 0.55 -0.7 548,160 - IAI47_02640 0.55 +0.6 548,160 - IAI47_02640 0.55 +0.9 548,160 - IAI47_02640 0.55 -0.0 548,160 - IAI47_02640 0.55 +1.5 548,289 + +0.3 548,289 + +0.1 548,289 + -0.4 548,290 - -0.3 548,290 - -1.2 548,290 - +0.3 548,290 - -1.1 548,290 - +3.0 548,290 - +1.7 548,293 + +0.4 548,293 + -0.9 548,293 + +0.1 548,294 - -0.1 548,307 - -0.7 548,307 - +0.3 548,341 + -0.6 548,341 + +0.1 548,341 + -0.7 548,341 + +0.8 548,341 + +0.4 548,341 + +1.0 548,342 - -2.7 548,342 - +0.3 548,342 - +0.9 548,342 - +1.5 548,342 - +0.6 548,342 - +0.4 548,342 - +0.4 548,381 + +0.5 548,382 - -0.1 548,413 + +1.4 548,414 - -0.1 548,486 - -0.6 548,500 + -0.3 548,500 + +0.1 548,500 + +0.4 548,500 + -0.9 548,501 - -0.9 548,501 - +0.4 548,503 + -0.5 548,503 + +1.2 548,503 + +1.6 548,504 - +0.3 548,504 - +3.0 548,504 - -0.9 548,504 - +1.5 548,504 - +0.5 548,516 - -0.6 548,516 - +0.5 548,516 - +0.6 548,516 - -2.2 548,516 - +1.4 548,650 + IAI47_02645 0.15 -0.4 548,650 + IAI47_02645 0.15 +0.1 548,651 - IAI47_02645 0.15 -0.2 548,651 - IAI47_02645 0.15 +0.5 548,727 - IAI47_02645 0.19 +0.8 548,833 + IAI47_02645 0.24 -1.6 548,860 + IAI47_02645 0.26 +2.1 548,861 - IAI47_02645 0.26 -1.4 548,875 + IAI47_02645 0.27 +0.5 548,875 + IAI47_02645 0.27 +0.1 548,875 + IAI47_02645 0.27 -0.3 548,875 + IAI47_02645 0.27 +1.7 548,875 + IAI47_02645 0.27 +0.0 548,876 - IAI47_02645 0.27 +0.8 548,876 - IAI47_02645 0.27 +1.3 548,876 - IAI47_02645 0.27 -0.7 548,876 - IAI47_02645 0.27 +1.1 548,876 - IAI47_02645 0.27 -0.6 548,876 - IAI47_02645 0.27 +1.0 548,918 - IAI47_02645 0.29 -0.3 548,918 - IAI47_02645 0.29 -0.2 548,918 - IAI47_02645 0.29 +2.1 549,055 + IAI47_02645 0.36 +1.1 549,055 + IAI47_02645 0.36 -0.9 549,055 + IAI47_02645 0.36 -0.4 549,056 - IAI47_02645 0.36 -0.0 549,056 - IAI47_02645 0.36 +0.3 549,196 + IAI47_02645 0.43 -1.4 549,203 - IAI47_02645 0.43 -0.3 549,228 + IAI47_02645 0.45 +0.8 549,228 + IAI47_02645 0.45 +1.4 549,228 + IAI47_02645 0.45 +0.3 549,228 + IAI47_02645 0.45 -0.0 549,228 + IAI47_02645 0.45 -0.5 549,229 - IAI47_02645 0.45 -0.4 549,229 - IAI47_02645 0.45 +3.8 549,229 - IAI47_02645 0.45 +0.3 549,285 + IAI47_02645 0.48 +1.1 549,285 + IAI47_02645 0.48 -0.4 549,286 - IAI47_02645 0.48 -0.9 549,286 - IAI47_02645 0.48 +1.2
Or see this region's nucleotide sequence