Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02625 and IAI47_02630 are separated by 68 nucleotides IAI47_02630 and IAI47_02635 are separated by 220 nucleotides
IAI47_02625: IAI47_02625 - ribonuclease R, at 542,865 to 545,354
_02625
IAI47_02630: IAI47_02630 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 545,423 to 546,157
_02630
IAI47_02635: IAI47_02635 - isovaleryl-CoA dehydrogenase, at 546,378 to 548,006
_02635
Position (kb) 545
546
547 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 544.506 kb on + strand, within IAI47_02625 at 544.507 kb on - strand, within IAI47_02625 at 544.551 kb on + strand, within IAI47_02625 at 544.551 kb on + strand, within IAI47_02625 at 544.552 kb on - strand, within IAI47_02625 at 544.552 kb on - strand, within IAI47_02625 at 544.552 kb on - strand, within IAI47_02625 at 544.562 kb on + strand, within IAI47_02625 at 544.563 kb on - strand, within IAI47_02625 at 544.614 kb on + strand, within IAI47_02625 at 544.614 kb on + strand, within IAI47_02625 at 544.615 kb on - strand, within IAI47_02625 at 544.615 kb on - strand, within IAI47_02625 at 544.615 kb on - strand, within IAI47_02625 at 544.671 kb on + strand, within IAI47_02625 at 544.671 kb on + strand, within IAI47_02625 at 544.671 kb on + strand, within IAI47_02625 at 544.671 kb on + strand, within IAI47_02625 at 544.710 kb on - strand, within IAI47_02625 at 544.731 kb on + strand, within IAI47_02625 at 544.732 kb on - strand, within IAI47_02625 at 544.732 kb on - strand, within IAI47_02625 at 544.732 kb on - strand, within IAI47_02625 at 544.835 kb on + strand, within IAI47_02625 at 544.836 kb on - strand, within IAI47_02625 at 544.836 kb on - strand, within IAI47_02625 at 544.910 kb on - strand, within IAI47_02625 at 544.962 kb on + strand, within IAI47_02625 at 544.962 kb on + strand, within IAI47_02625 at 544.962 kb on + strand, within IAI47_02625 at 544.962 kb on + strand, within IAI47_02625 at 544.963 kb on - strand, within IAI47_02625 at 544.963 kb on - strand, within IAI47_02625 at 544.963 kb on - strand, within IAI47_02625 at 544.963 kb on - strand, within IAI47_02625 at 544.963 kb on - strand, within IAI47_02625 at 545.019 kb on + strand, within IAI47_02625 at 545.020 kb on - strand, within IAI47_02625 at 545.020 kb on - strand, within IAI47_02625 at 545.076 kb on - strand, within IAI47_02625 at 545.076 kb on - strand, within IAI47_02625 at 545.127 kb on - strand at 545.201 kb on + strand at 545.202 kb on - strand at 545.234 kb on + strand at 545.234 kb on + strand at 545.234 kb on + strand at 545.235 kb on - strand at 545.267 kb on + strand at 545.395 kb on + strand at 545.396 kb on - strand at 545.396 kb on - strand at 545.396 kb on - strand at 545.434 kb on + strand at 545.501 kb on - strand, within IAI47_02630 at 545.501 kb on - strand, within IAI47_02630 at 545.570 kb on - strand, within IAI47_02630 at 545.570 kb on - strand, within IAI47_02630 at 545.629 kb on + strand, within IAI47_02630 at 545.635 kb on - strand, within IAI47_02630 at 545.635 kb on - strand, within IAI47_02630 at 545.715 kb on + strand, within IAI47_02630 at 545.715 kb on + strand, within IAI47_02630 at 545.715 kb on + strand, within IAI47_02630 at 545.716 kb on - strand, within IAI47_02630 at 545.716 kb on - strand, within IAI47_02630 at 545.716 kb on - strand, within IAI47_02630 at 545.744 kb on - strand, within IAI47_02630 at 545.744 kb on - strand, within IAI47_02630 at 545.900 kb on - strand, within IAI47_02630 at 545.921 kb on + strand, within IAI47_02630 at 545.921 kb on + strand, within IAI47_02630 at 545.921 kb on + strand, within IAI47_02630 at 545.921 kb on + strand, within IAI47_02630 at 545.921 kb on + strand, within IAI47_02630 at 545.921 kb on + strand, within IAI47_02630 at 545.921 kb on + strand, within IAI47_02630 at 545.922 kb on - strand, within IAI47_02630 at 545.922 kb on - strand, within IAI47_02630 at 545.922 kb on - strand, within IAI47_02630 at 545.922 kb on - strand, within IAI47_02630 at 545.922 kb on - strand, within IAI47_02630 at 545.922 kb on - strand, within IAI47_02630 at 545.922 kb on - strand, within IAI47_02630 at 545.923 kb on + strand, within IAI47_02630 at 545.923 kb on + strand, within IAI47_02630 at 545.923 kb on + strand, within IAI47_02630 at 545.923 kb on + strand, within IAI47_02630 at 545.923 kb on + strand, within IAI47_02630 at 545.923 kb on + strand, within IAI47_02630 at 545.924 kb on - strand, within IAI47_02630 at 545.924 kb on - strand, within IAI47_02630 at 545.924 kb on - strand, within IAI47_02630 at 545.924 kb on - strand, within IAI47_02630 at 545.924 kb on - strand, within IAI47_02630 at 545.924 kb on - strand, within IAI47_02630 at 545.924 kb on - strand, within IAI47_02630 at 545.962 kb on + strand, within IAI47_02630 at 545.962 kb on + strand, within IAI47_02630 at 545.962 kb on + strand, within IAI47_02630 at 545.963 kb on - strand, within IAI47_02630 at 545.963 kb on - strand, within IAI47_02630 at 546.184 kb on + strand at 546.185 kb on - strand at 546.193 kb on + strand at 546.193 kb on + strand at 546.202 kb on + strand at 546.202 kb on + strand at 546.203 kb on - strand at 546.203 kb on - strand at 546.203 kb on - strand at 546.203 kb on - strand at 546.203 kb on - strand at 546.203 kb on - strand at 546.203 kb on - strand at 546.219 kb on + strand at 546.219 kb on + strand at 546.219 kb on + strand at 546.219 kb on + strand at 546.219 kb on + strand at 546.219 kb on + strand at 546.219 kb on + strand at 546.219 kb on + strand at 546.219 kb on + strand at 546.219 kb on + strand at 546.220 kb on - strand at 546.220 kb on - strand at 546.220 kb on - strand at 546.220 kb on - strand at 546.220 kb on - strand at 546.220 kb on - strand at 546.220 kb on - strand at 546.221 kb on + strand at 546.221 kb on + strand at 546.221 kb on + strand at 546.221 kb on + strand at 546.221 kb on + strand at 546.221 kb on + strand at 546.221 kb on + strand at 546.222 kb on - strand at 546.222 kb on - strand at 546.222 kb on - strand at 546.222 kb on - strand at 546.222 kb on - strand at 546.222 kb on - strand at 546.223 kb on + strand at 546.223 kb on + strand at 546.223 kb on + strand at 546.223 kb on + strand at 546.223 kb on + strand at 546.223 kb on + strand at 546.224 kb on - strand at 546.224 kb on - strand at 546.224 kb on - strand at 546.224 kb on - strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.279 kb on + strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.280 kb on - strand at 546.287 kb on + strand at 546.287 kb on + strand at 546.287 kb on + strand at 546.287 kb on + strand at 546.287 kb on + strand at 546.288 kb on - strand at 546.288 kb on - strand at 546.288 kb on - strand at 546.288 kb on - strand at 546.288 kb on - strand at 546.288 kb on - strand at 546.288 kb on - strand at 546.288 kb on - strand at 546.288 kb on - strand at 546.288 kb on - strand at 546.288 kb on - strand at 546.345 kb on - strand at 546.346 kb on + strand at 546.346 kb on + strand at 546.346 kb on + strand at 546.346 kb on + strand at 546.346 kb on + strand at 546.346 kb on + strand at 546.346 kb on + strand at 546.346 kb on + strand at 546.346 kb on + strand at 546.346 kb on + strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.347 kb on - strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.351 kb on - strand at 546.351 kb on - strand at 546.351 kb on - strand at 546.351 kb on - strand at 546.351 kb on - strand at 546.351 kb on - strand at 546.351 kb on - strand at 546.405 kb on - strand at 546.449 kb on + strand at 546.514 kb on + strand at 546.514 kb on + strand at 546.514 kb on + strand at 546.515 kb on - strand at 546.515 kb on - strand at 546.515 kb on - strand at 546.740 kb on + strand, within IAI47_02635 at 546.741 kb on - strand, within IAI47_02635 at 546.811 kb on + strand, within IAI47_02635 at 546.811 kb on + strand, within IAI47_02635 at 546.811 kb on + strand, within IAI47_02635 at 546.811 kb on + strand, within IAI47_02635 at 546.811 kb on + strand, within IAI47_02635 at 546.812 kb on - strand, within IAI47_02635 at 546.812 kb on - strand, within IAI47_02635 at 546.819 kb on + strand, within IAI47_02635 at 546.819 kb on + strand, within IAI47_02635 at 546.819 kb on + strand, within IAI47_02635 at 546.819 kb on + strand, within IAI47_02635 at 546.819 kb on + strand, within IAI47_02635 at 546.819 kb on + strand, within IAI47_02635 at 546.819 kb on + strand, within IAI47_02635 at 546.819 kb on + strand, within IAI47_02635 at 546.820 kb on - strand, within IAI47_02635 at 546.870 kb on + strand, within IAI47_02635 at 546.927 kb on - strand, within IAI47_02635 at 547.011 kb on + strand, within IAI47_02635 at 547.012 kb on - strand, within IAI47_02635 at 547.028 kb on + strand, within IAI47_02635 at 547.028 kb on + strand, within IAI47_02635 at 547.029 kb on - strand, within IAI47_02635 at 547.029 kb on - strand, within IAI47_02635 at 547.093 kb on + strand, within IAI47_02635 at 547.094 kb on - strand, within IAI47_02635 at 547.094 kb on - strand, within IAI47_02635 at 547.094 kb on - strand, within IAI47_02635 at 547.094 kb on - strand, within IAI47_02635
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 544,506 + IAI47_02625 0.66 -1.7 544,507 - IAI47_02625 0.66 -1.2 544,551 + IAI47_02625 0.68 +0.0 544,551 + IAI47_02625 0.68 -1.1 544,552 - IAI47_02625 0.68 -1.7 544,552 - IAI47_02625 0.68 -0.2 544,552 - IAI47_02625 0.68 -0.3 544,562 + IAI47_02625 0.68 -2.4 544,563 - IAI47_02625 0.68 -0.9 544,614 + IAI47_02625 0.70 -1.4 544,614 + IAI47_02625 0.70 -0.9 544,615 - IAI47_02625 0.70 -0.3 544,615 - IAI47_02625 0.70 -1.4 544,615 - IAI47_02625 0.70 -1.9 544,671 + IAI47_02625 0.73 -0.2 544,671 + IAI47_02625 0.73 -1.0 544,671 + IAI47_02625 0.73 -0.6 544,671 + IAI47_02625 0.73 +0.1 544,710 - IAI47_02625 0.74 -0.4 544,731 + IAI47_02625 0.75 +0.1 544,732 - IAI47_02625 0.75 +0.6 544,732 - IAI47_02625 0.75 -1.9 544,732 - IAI47_02625 0.75 -0.9 544,835 + IAI47_02625 0.79 -1.0 544,836 - IAI47_02625 0.79 -2.4 544,836 - IAI47_02625 0.79 -1.2 544,910 - IAI47_02625 0.82 -2.2 544,962 + IAI47_02625 0.84 -0.9 544,962 + IAI47_02625 0.84 -1.4 544,962 + IAI47_02625 0.84 -1.7 544,962 + IAI47_02625 0.84 -0.4 544,963 - IAI47_02625 0.84 -1.4 544,963 - IAI47_02625 0.84 -2.7 544,963 - IAI47_02625 0.84 -1.7 544,963 - IAI47_02625 0.84 -0.9 544,963 - IAI47_02625 0.84 -0.2 545,019 + IAI47_02625 0.87 -0.2 545,020 - IAI47_02625 0.87 -2.2 545,020 - IAI47_02625 0.87 +0.1 545,076 - IAI47_02625 0.89 -1.4 545,076 - IAI47_02625 0.89 -0.4 545,127 - +0.7 545,201 + +0.1 545,202 - -0.4 545,234 + -0.7 545,234 + +0.1 545,234 + -0.1 545,235 - -0.9 545,267 + +0.5 545,395 + -1.0 545,396 - -1.4 545,396 - +1.4 545,396 - +2.5 545,434 + +0.4 545,501 - IAI47_02630 0.11 +0.6 545,501 - IAI47_02630 0.11 +0.3 545,570 - IAI47_02630 0.20 -0.8 545,570 - IAI47_02630 0.20 -1.7 545,629 + IAI47_02630 0.28 -0.7 545,635 - IAI47_02630 0.29 +0.3 545,635 - IAI47_02630 0.29 +0.3 545,715 + IAI47_02630 0.40 -0.2 545,715 + IAI47_02630 0.40 -1.4 545,715 + IAI47_02630 0.40 -0.4 545,716 - IAI47_02630 0.40 +0.4 545,716 - IAI47_02630 0.40 -0.5 545,716 - IAI47_02630 0.40 +0.1 545,744 - IAI47_02630 0.44 +0.6 545,744 - IAI47_02630 0.44 -1.0 545,900 - IAI47_02630 0.65 +1.1 545,921 + IAI47_02630 0.68 -1.7 545,921 + IAI47_02630 0.68 -0.9 545,921 + IAI47_02630 0.68 +1.4 545,921 + IAI47_02630 0.68 +1.1 545,921 + IAI47_02630 0.68 -0.4 545,921 + IAI47_02630 0.68 -1.1 545,921 + IAI47_02630 0.68 +0.5 545,922 - IAI47_02630 0.68 -1.9 545,922 - IAI47_02630 0.68 +1.3 545,922 - IAI47_02630 0.68 -1.2 545,922 - IAI47_02630 0.68 -0.1 545,922 - IAI47_02630 0.68 -1.7 545,922 - IAI47_02630 0.68 +0.5 545,922 - IAI47_02630 0.68 -0.6 545,923 + IAI47_02630 0.68 +0.1 545,923 + IAI47_02630 0.68 +0.1 545,923 + IAI47_02630 0.68 +0.3 545,923 + IAI47_02630 0.68 -0.4 545,923 + IAI47_02630 0.68 -0.4 545,923 + IAI47_02630 0.68 +0.1 545,924 - IAI47_02630 0.68 +0.1 545,924 - IAI47_02630 0.68 +0.1 545,924 - IAI47_02630 0.68 -0.5 545,924 - IAI47_02630 0.68 -0.3 545,924 - IAI47_02630 0.68 -0.9 545,924 - IAI47_02630 0.68 -0.9 545,924 - IAI47_02630 0.68 +0.6 545,962 + IAI47_02630 0.73 -1.9 545,962 + IAI47_02630 0.73 -1.1 545,962 + IAI47_02630 0.73 -0.2 545,963 - IAI47_02630 0.73 -0.2 545,963 - IAI47_02630 0.73 -0.9 546,184 + -0.1 546,185 - +0.1 546,193 + -0.4 546,193 + +0.1 546,202 + -0.4 546,202 + -0.9 546,203 - -1.2 546,203 - +1.0 546,203 - +2.6 546,203 - +0.1 546,203 - +0.1 546,203 - -1.3 546,203 - -0.4 546,219 + +0.1 546,219 + -2.2 546,219 + +0.7 546,219 + -1.7 546,219 + +1.1 546,219 + +0.8 546,219 + +1.4 546,219 + -0.1 546,219 + +0.1 546,219 + -0.6 546,220 - -1.1 546,220 - -0.6 546,220 - +1.7 546,220 - -1.6 546,220 - -2.4 546,220 - +0.4 546,220 - -0.3 546,221 + +1.0 546,221 + -0.4 546,221 + +0.1 546,221 + -0.1 546,221 + -0.7 546,221 + +0.9 546,221 + -0.4 546,222 - -1.0 546,222 - -0.6 546,222 - -0.7 546,222 - +2.0 546,222 - +0.1 546,222 - -0.7 546,223 + +0.8 546,223 + -1.0 546,223 + -0.4 546,223 + +0.7 546,223 + -0.7 546,223 + -0.4 546,224 - -0.1 546,224 - -0.4 546,224 - -0.5 546,224 - +1.3 546,279 + -0.9 546,279 + -0.1 546,279 + +2.1 546,279 + -0.6 546,279 + -0.2 546,279 + -0.7 546,279 + +0.3 546,279 + -0.2 546,279 + -0.4 546,279 + -0.7 546,279 + +0.8 546,279 + -0.9 546,279 + +0.4 546,279 + -2.4 546,279 + +2.5 546,280 - +0.6 546,280 - +0.6 546,280 - +0.1 546,280 - +0.7 546,280 - +0.1 546,280 - -0.3 546,280 - -0.3 546,280 - -1.4 546,280 - +0.1 546,280 - +0.3 546,280 - +1.1 546,280 - +0.1 546,280 - +1.7 546,280 - +1.0 546,280 - -0.0 546,280 - -0.7 546,280 - +1.0 546,280 - -0.1 546,287 + +0.6 546,287 + +0.1 546,287 + -0.3 546,287 + +0.8 546,287 + -0.1 546,288 - -0.9 546,288 - +0.4 546,288 - +3.1 546,288 - -0.5 546,288 - +0.8 546,288 - -0.5 546,288 - +1.1 546,288 - -0.9 546,288 - -2.0 546,288 - -0.9 546,288 - +1.7 546,345 - +0.7 546,346 + -0.5 546,346 + -0.4 546,346 + -3.2 546,346 + +0.6 546,346 + -0.1 546,346 + +0.3 546,346 + +0.0 546,346 + +0.4 546,346 + +0.6 546,346 + -0.2 546,347 - -1.4 546,347 - -0.9 546,347 - +0.4 546,347 - +1.1 546,347 - +0.1 546,347 - +0.3 546,347 - +0.1 546,347 - -0.4 546,347 - -0.3 546,347 - -0.6 546,347 - -0.5 546,347 - -0.9 546,347 - -0.1 546,347 - +2.1 546,347 - -2.0 546,350 + +1.4 546,350 + +0.1 546,350 + +0.5 546,350 + -1.1 546,350 + +0.6 546,351 - +1.0 546,351 - +0.4 546,351 - -0.9 546,351 - +2.1 546,351 - -0.7 546,351 - -0.3 546,351 - +1.1 546,405 - +0.6 546,449 + -1.4 546,514 + +1.6 546,514 + -0.0 546,514 + +0.6 546,515 - -0.6 546,515 - +0.1 546,515 - +0.4 546,740 + IAI47_02635 0.22 -0.9 546,741 - IAI47_02635 0.22 -1.3 546,811 + IAI47_02635 0.27 +1.1 546,811 + IAI47_02635 0.27 -0.4 546,811 + IAI47_02635 0.27 +1.4 546,811 + IAI47_02635 0.27 +0.1 546,811 + IAI47_02635 0.27 +0.6 546,812 - IAI47_02635 0.27 +0.1 546,812 - IAI47_02635 0.27 -1.4 546,819 + IAI47_02635 0.27 -0.9 546,819 + IAI47_02635 0.27 -0.1 546,819 + IAI47_02635 0.27 +0.4 546,819 + IAI47_02635 0.27 +0.4 546,819 + IAI47_02635 0.27 +0.6 546,819 + IAI47_02635 0.27 -0.9 546,819 + IAI47_02635 0.27 -0.3 546,819 + IAI47_02635 0.27 +0.6 546,820 - IAI47_02635 0.27 +0.8 546,870 + IAI47_02635 0.30 +0.1 546,927 - IAI47_02635 0.34 +0.1 547,011 + IAI47_02635 0.39 -1.4 547,012 - IAI47_02635 0.39 +1.0 547,028 + IAI47_02635 0.40 +0.1 547,028 + IAI47_02635 0.40 -0.5 547,029 - IAI47_02635 0.40 +0.3 547,029 - IAI47_02635 0.40 +2.1 547,093 + IAI47_02635 0.44 -0.2 547,094 - IAI47_02635 0.44 -1.7 547,094 - IAI47_02635 0.44 -0.4 547,094 - IAI47_02635 0.44 +0.1 547,094 - IAI47_02635 0.44 -0.7
Or see this region's nucleotide sequence