Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01775 and IAI47_01780 are separated by 35 nucleotides IAI47_01780 and IAI47_01785 are separated by 58 nucleotides IAI47_01785 and IAI47_01790 are separated by 34 nucleotides
IAI47_01775: IAI47_01775 - 4-alpha-glucanotransferase, at 388,614 to 390,695
_01775
IAI47_01780: IAI47_01780 - Fe-S biogenesis protein NfuA, at 390,731 to 391,306
_01780
IAI47_01785: IAI47_01785 - DNA utilization protein GntX, at 391,365 to 392,045
_01785
IAI47_01790: IAI47_01790 - pimeloyl-ACP methyl ester esterase BioH, at 392,080 to 392,856
_01790
Position (kb) 390
391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 389.749 kb on + strand, within IAI47_01775 at 389.749 kb on + strand, within IAI47_01775 at 389.749 kb on + strand, within IAI47_01775 at 389.750 kb on - strand, within IAI47_01775 at 389.750 kb on - strand, within IAI47_01775 at 389.791 kb on - strand, within IAI47_01775 at 389.799 kb on - strand, within IAI47_01775 at 389.896 kb on - strand, within IAI47_01775 at 389.952 kb on - strand, within IAI47_01775 at 389.971 kb on + strand, within IAI47_01775 at 389.971 kb on + strand, within IAI47_01775 at 389.972 kb on - strand, within IAI47_01775 at 390.011 kb on + strand, within IAI47_01775 at 390.012 kb on - strand, within IAI47_01775 at 390.021 kb on + strand, within IAI47_01775 at 390.021 kb on + strand, within IAI47_01775 at 390.021 kb on + strand, within IAI47_01775 at 390.021 kb on + strand, within IAI47_01775 at 390.021 kb on + strand, within IAI47_01775 at 390.022 kb on - strand, within IAI47_01775 at 390.022 kb on - strand, within IAI47_01775 at 390.022 kb on - strand, within IAI47_01775 at 390.022 kb on - strand, within IAI47_01775 at 390.129 kb on - strand, within IAI47_01775 at 390.220 kb on - strand, within IAI47_01775 at 390.220 kb on - strand, within IAI47_01775 at 390.220 kb on - strand, within IAI47_01775 at 390.233 kb on + strand, within IAI47_01775 at 390.233 kb on + strand, within IAI47_01775 at 390.234 kb on - strand, within IAI47_01775 at 390.234 kb on - strand, within IAI47_01775 at 390.248 kb on + strand, within IAI47_01775 at 390.249 kb on - strand, within IAI47_01775 at 390.409 kb on + strand, within IAI47_01775 at 390.536 kb on + strand at 390.536 kb on + strand at 390.568 kb on + strand at 390.568 kb on + strand at 390.569 kb on - strand at 390.569 kb on - strand at 390.569 kb on - strand at 390.576 kb on + strand at 390.576 kb on + strand at 390.581 kb on + strand at 390.581 kb on + strand at 390.582 kb on - strand at 390.582 kb on - strand at 390.582 kb on - strand at 390.582 kb on - strand at 390.641 kb on + strand at 390.641 kb on + strand at 390.641 kb on + strand at 390.642 kb on - strand at 390.642 kb on - strand at 390.642 kb on - strand at 390.693 kb on + strand at 390.726 kb on + strand at 390.726 kb on + strand at 390.726 kb on + strand at 390.726 kb on + strand at 390.726 kb on + strand at 390.726 kb on + strand at 390.726 kb on + strand at 390.727 kb on - strand at 390.727 kb on - strand at 390.727 kb on - strand at 390.727 kb on - strand at 390.735 kb on + strand at 390.735 kb on + strand at 390.736 kb on - strand at 390.888 kb on + strand, within IAI47_01780 at 391.093 kb on - strand, within IAI47_01780 at 391.116 kb on + strand, within IAI47_01780 at 391.116 kb on + strand, within IAI47_01780 at 391.117 kb on - strand, within IAI47_01780 at 391.117 kb on - strand, within IAI47_01780 at 391.179 kb on + strand, within IAI47_01780 at 391.179 kb on + strand, within IAI47_01780 at 391.180 kb on - strand, within IAI47_01780 at 391.329 kb on - strand at 391.334 kb on - strand at 391.334 kb on - strand at 391.342 kb on - strand at 391.344 kb on - strand at 391.347 kb on - strand at 391.347 kb on - strand at 391.347 kb on - strand at 391.347 kb on - strand at 391.347 kb on - strand at 391.366 kb on + strand at 391.367 kb on - strand at 391.367 kb on - strand at 391.367 kb on - strand at 391.374 kb on - strand at 391.374 kb on - strand at 391.374 kb on - strand at 391.374 kb on - strand at 391.374 kb on - strand at 391.420 kb on - strand at 391.420 kb on - strand at 391.440 kb on + strand, within IAI47_01785 at 391.440 kb on + strand, within IAI47_01785 at 391.440 kb on + strand, within IAI47_01785 at 391.440 kb on + strand, within IAI47_01785 at 391.441 kb on - strand, within IAI47_01785 at 391.441 kb on - strand, within IAI47_01785 at 391.441 kb on - strand, within IAI47_01785 at 391.441 kb on - strand, within IAI47_01785 at 391.441 kb on - strand, within IAI47_01785 at 391.441 kb on - strand, within IAI47_01785 at 391.445 kb on + strand, within IAI47_01785 at 391.457 kb on + strand, within IAI47_01785 at 391.457 kb on + strand, within IAI47_01785 at 391.457 kb on + strand, within IAI47_01785 at 391.457 kb on + strand, within IAI47_01785 at 391.457 kb on + strand, within IAI47_01785 at 391.457 kb on + strand, within IAI47_01785 at 391.457 kb on + strand, within IAI47_01785 at 391.458 kb on - strand, within IAI47_01785 at 391.458 kb on - strand, within IAI47_01785 at 391.458 kb on - strand, within IAI47_01785 at 391.481 kb on + strand, within IAI47_01785 at 391.524 kb on + strand, within IAI47_01785 at 391.524 kb on + strand, within IAI47_01785 at 391.524 kb on + strand, within IAI47_01785 at 391.524 kb on + strand, within IAI47_01785 at 391.525 kb on - strand, within IAI47_01785 at 391.525 kb on - strand, within IAI47_01785 at 391.530 kb on - strand, within IAI47_01785 at 391.563 kb on + strand, within IAI47_01785 at 391.563 kb on + strand, within IAI47_01785 at 391.563 kb on + strand, within IAI47_01785 at 391.564 kb on - strand, within IAI47_01785 at 391.564 kb on - strand, within IAI47_01785 at 391.564 kb on - strand, within IAI47_01785 at 391.739 kb on + strand, within IAI47_01785 at 391.739 kb on + strand, within IAI47_01785 at 391.740 kb on - strand, within IAI47_01785 at 391.740 kb on - strand, within IAI47_01785 at 391.788 kb on + strand, within IAI47_01785 at 391.788 kb on + strand, within IAI47_01785 at 391.789 kb on - strand, within IAI47_01785 at 391.812 kb on - strand, within IAI47_01785 at 391.837 kb on + strand, within IAI47_01785 at 391.837 kb on + strand, within IAI47_01785 at 391.837 kb on + strand, within IAI47_01785 at 391.837 kb on + strand, within IAI47_01785 at 391.837 kb on + strand, within IAI47_01785 at 391.838 kb on - strand, within IAI47_01785 at 391.838 kb on - strand, within IAI47_01785 at 391.838 kb on - strand, within IAI47_01785 at 391.838 kb on - strand, within IAI47_01785 at 391.838 kb on - strand, within IAI47_01785 at 391.838 kb on - strand, within IAI47_01785 at 391.838 kb on - strand, within IAI47_01785 at 391.878 kb on - strand, within IAI47_01785 at 391.957 kb on - strand, within IAI47_01785 at 391.971 kb on + strand, within IAI47_01785 at 391.971 kb on + strand, within IAI47_01785 at 391.971 kb on + strand, within IAI47_01785 at 391.971 kb on + strand, within IAI47_01785 at 391.972 kb on - strand, within IAI47_01785 at 391.972 kb on - strand, within IAI47_01785 at 391.972 kb on - strand, within IAI47_01785 at 391.972 kb on - strand, within IAI47_01785 at 392.040 kb on + strand at 392.040 kb on + strand at 392.040 kb on + strand at 392.041 kb on - strand at 392.041 kb on - strand at 392.041 kb on - strand at 392.041 kb on - strand at 392.045 kb on + strand at 392.045 kb on + strand at 392.045 kb on + strand at 392.046 kb on - strand at 392.057 kb on + strand at 392.071 kb on + strand at 392.072 kb on - strand at 392.072 kb on - strand at 392.073 kb on + strand at 392.073 kb on + strand at 392.074 kb on + strand at 392.074 kb on + strand at 392.074 kb on + strand at 392.074 kb on + strand at 392.074 kb on + strand at 392.074 kb on + strand at 392.074 kb on + strand at 392.074 kb on + strand at 392.074 kb on + strand at 392.075 kb on - strand at 392.075 kb on - strand at 392.075 kb on - strand at 392.075 kb on - strand at 392.075 kb on - strand at 392.075 kb on - strand at 392.075 kb on - strand at 392.075 kb on - strand at 392.175 kb on + strand, within IAI47_01790 at 392.175 kb on + strand, within IAI47_01790 at 392.175 kb on + strand, within IAI47_01790 at 392.197 kb on + strand, within IAI47_01790 at 392.197 kb on + strand, within IAI47_01790 at 392.198 kb on - strand, within IAI47_01790 at 392.198 kb on - strand, within IAI47_01790 at 392.282 kb on + strand, within IAI47_01790 at 392.282 kb on + strand, within IAI47_01790 at 392.282 kb on + strand, within IAI47_01790 at 392.283 kb on - strand, within IAI47_01790 at 392.283 kb on - strand, within IAI47_01790 at 392.283 kb on - strand, within IAI47_01790 at 392.283 kb on - strand, within IAI47_01790
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 389,749 + IAI47_01775 0.55 +0.1 389,749 + IAI47_01775 0.55 -2.7 389,749 + IAI47_01775 0.55 +0.1 389,750 - IAI47_01775 0.55 -0.7 389,750 - IAI47_01775 0.55 -1.9 389,791 - IAI47_01775 0.57 -1.1 389,799 - IAI47_01775 0.57 +0.6 389,896 - IAI47_01775 0.62 -0.4 389,952 - IAI47_01775 0.64 -0.4 389,971 + IAI47_01775 0.65 -0.9 389,971 + IAI47_01775 0.65 +0.4 389,972 - IAI47_01775 0.65 -0.2 390,011 + IAI47_01775 0.67 +1.7 390,012 - IAI47_01775 0.67 -0.9 390,021 + IAI47_01775 0.68 -0.5 390,021 + IAI47_01775 0.68 +2.7 390,021 + IAI47_01775 0.68 -2.2 390,021 + IAI47_01775 0.68 -0.6 390,021 + IAI47_01775 0.68 -0.1 390,022 - IAI47_01775 0.68 +0.5 390,022 - IAI47_01775 0.68 +0.1 390,022 - IAI47_01775 0.68 +1.4 390,022 - IAI47_01775 0.68 -1.9 390,129 - IAI47_01775 0.73 +0.1 390,220 - IAI47_01775 0.77 +0.7 390,220 - IAI47_01775 0.77 -0.9 390,220 - IAI47_01775 0.77 -0.4 390,233 + IAI47_01775 0.78 +1.2 390,233 + IAI47_01775 0.78 +0.1 390,234 - IAI47_01775 0.78 +0.1 390,234 - IAI47_01775 0.78 +0.1 390,248 + IAI47_01775 0.78 -0.4 390,249 - IAI47_01775 0.79 -1.4 390,409 + IAI47_01775 0.86 +0.5 390,536 + +0.1 390,536 + -0.2 390,568 + +1.6 390,568 + +0.1 390,569 - -0.3 390,569 - -1.3 390,569 - -0.1 390,576 + -0.6 390,576 + -0.7 390,581 + +0.9 390,581 + -1.7 390,582 - +1.1 390,582 - +0.5 390,582 - +0.6 390,582 - +0.0 390,641 + +1.4 390,641 + -0.4 390,641 + -1.4 390,642 - +0.1 390,642 - -0.5 390,642 - -0.9 390,693 + -1.7 390,726 + +0.3 390,726 + -0.7 390,726 + -0.2 390,726 + +0.1 390,726 + +0.1 390,726 + +1.6 390,726 + +0.5 390,727 - -0.4 390,727 - +0.1 390,727 - +1.0 390,727 - +0.1 390,735 + -1.0 390,735 + -1.4 390,736 - -0.2 390,888 + IAI47_01780 0.27 +0.1 391,093 - IAI47_01780 0.63 -2.4 391,116 + IAI47_01780 0.67 -0.9 391,116 + IAI47_01780 0.67 +1.1 391,117 - IAI47_01780 0.67 +0.7 391,117 - IAI47_01780 0.67 -1.9 391,179 + IAI47_01780 0.78 -1.2 391,179 + IAI47_01780 0.78 -0.9 391,180 - IAI47_01780 0.78 +1.1 391,329 - +0.5 391,334 - +2.5 391,334 - -0.7 391,342 - +0.1 391,344 - +0.6 391,347 - +0.3 391,347 - +0.7 391,347 - +0.5 391,347 - -1.2 391,347 - -2.2 391,366 + -0.5 391,367 - +0.4 391,367 - -0.2 391,367 - -0.2 391,374 - +0.6 391,374 - +0.4 391,374 - +0.1 391,374 - -0.2 391,374 - +1.4 391,420 - -0.0 391,420 - -0.9 391,440 + IAI47_01785 0.11 +1.0 391,440 + IAI47_01785 0.11 -0.4 391,440 + IAI47_01785 0.11 -1.2 391,440 + IAI47_01785 0.11 +0.7 391,441 - IAI47_01785 0.11 -0.9 391,441 - IAI47_01785 0.11 +0.0 391,441 - IAI47_01785 0.11 -0.0 391,441 - IAI47_01785 0.11 -0.4 391,441 - IAI47_01785 0.11 -1.4 391,441 - IAI47_01785 0.11 -0.3 391,445 + IAI47_01785 0.12 -1.2 391,457 + IAI47_01785 0.14 +0.1 391,457 + IAI47_01785 0.14 +0.1 391,457 + IAI47_01785 0.14 +0.5 391,457 + IAI47_01785 0.14 -0.6 391,457 + IAI47_01785 0.14 -0.7 391,457 + IAI47_01785 0.14 +0.7 391,457 + IAI47_01785 0.14 -1.4 391,458 - IAI47_01785 0.14 +1.0 391,458 - IAI47_01785 0.14 -0.1 391,458 - IAI47_01785 0.14 -0.0 391,481 + IAI47_01785 0.17 +0.7 391,524 + IAI47_01785 0.23 -0.2 391,524 + IAI47_01785 0.23 -0.4 391,524 + IAI47_01785 0.23 +0.1 391,524 + IAI47_01785 0.23 +0.2 391,525 - IAI47_01785 0.23 -1.4 391,525 - IAI47_01785 0.23 -0.2 391,530 - IAI47_01785 0.24 +0.5 391,563 + IAI47_01785 0.29 +0.1 391,563 + IAI47_01785 0.29 -0.9 391,563 + IAI47_01785 0.29 +0.4 391,564 - IAI47_01785 0.29 -0.3 391,564 - IAI47_01785 0.29 +0.4 391,564 - IAI47_01785 0.29 -0.7 391,739 + IAI47_01785 0.55 +2.5 391,739 + IAI47_01785 0.55 +2.0 391,740 - IAI47_01785 0.55 -0.9 391,740 - IAI47_01785 0.55 -0.9 391,788 + IAI47_01785 0.62 -0.2 391,788 + IAI47_01785 0.62 -0.0 391,789 - IAI47_01785 0.62 +0.1 391,812 - IAI47_01785 0.66 +0.9 391,837 + IAI47_01785 0.69 +0.6 391,837 + IAI47_01785 0.69 -2.9 391,837 + IAI47_01785 0.69 -0.1 391,837 + IAI47_01785 0.69 +0.4 391,837 + IAI47_01785 0.69 +1.5 391,838 - IAI47_01785 0.69 -1.1 391,838 - IAI47_01785 0.69 +1.5 391,838 - IAI47_01785 0.69 +1.3 391,838 - IAI47_01785 0.69 +2.1 391,838 - IAI47_01785 0.69 -0.5 391,838 - IAI47_01785 0.69 -1.2 391,838 - IAI47_01785 0.69 -2.0 391,878 - IAI47_01785 0.75 +0.6 391,957 - IAI47_01785 0.87 +0.1 391,971 + IAI47_01785 0.89 -0.2 391,971 + IAI47_01785 0.89 +1.5 391,971 + IAI47_01785 0.89 +0.3 391,971 + IAI47_01785 0.89 +2.5 391,972 - IAI47_01785 0.89 +1.5 391,972 - IAI47_01785 0.89 +0.1 391,972 - IAI47_01785 0.89 +2.0 391,972 - IAI47_01785 0.89 +0.1 392,040 + +0.6 392,040 + -0.5 392,040 + +0.0 392,041 - +1.1 392,041 - +2.1 392,041 - -0.7 392,041 - +0.1 392,045 + +1.3 392,045 + -0.3 392,045 + -0.6 392,046 - +1.1 392,057 + +1.1 392,071 + -1.4 392,072 - +0.1 392,072 - -0.1 392,073 + -2.2 392,073 + +0.1 392,074 + +2.9 392,074 + -0.6 392,074 + -0.9 392,074 + -0.2 392,074 + -0.9 392,074 + -0.1 392,074 + -1.0 392,074 + +1.1 392,074 + +1.0 392,075 - +1.5 392,075 - -0.2 392,075 - -0.2 392,075 - -0.4 392,075 - -0.4 392,075 - -1.1 392,075 - -0.2 392,075 - +0.1 392,175 + IAI47_01790 0.12 -0.4 392,175 + IAI47_01790 0.12 -0.2 392,175 + IAI47_01790 0.12 -1.0 392,197 + IAI47_01790 0.15 -1.0 392,197 + IAI47_01790 0.15 -1.4 392,198 - IAI47_01790 0.15 -1.9 392,198 - IAI47_01790 0.15 +0.1 392,282 + IAI47_01790 0.26 -0.4 392,282 + IAI47_01790 0.26 +0.1 392,282 + IAI47_01790 0.26 +0.1 392,283 - IAI47_01790 0.26 +3.1 392,283 - IAI47_01790 0.26 -0.2 392,283 - IAI47_01790 0.26 +1.1 392,283 - IAI47_01790 0.26 +0.3
Or see this region's nucleotide sequence