Strain Fitness in Pantoea sp. MT58 around IAI47_01740

Experiment: Ying_Nucleobase14 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01730 and IAI47_01735 overlap by 8 nucleotidesIAI47_01735 and IAI47_01740 are separated by 8 nucleotidesIAI47_01740 and IAI47_01745 overlap by 1 nucleotides IAI47_01730: IAI47_01730 - biotin-independent malonate decarboxylase subunit beta, at 378,330 to 379,163 _01730 IAI47_01735: IAI47_01735 - malonate decarboxylase acyl carrier protein, at 379,156 to 379,455 _01735 IAI47_01740: IAI47_01740 - triphosphoribosyl-dephospho-CoA synthase, at 379,464 to 380,324 _01740 IAI47_01745: IAI47_01745 - malonate decarboxylase subunit alpha, at 380,324 to 381,979 _01745 Position (kb) 379 380 381Strain fitness (log2 ratio) -2 -1 0 1 2at 378.465 kb on - strand, within IAI47_01730at 378.465 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.566 kb on + strand, within IAI47_01730at 378.566 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.667 kb on + strand, within IAI47_01730at 378.667 kb on + strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.689 kb on + strand, within IAI47_01730at 378.689 kb on + strand, within IAI47_01730at 378.690 kb on - strand, within IAI47_01730at 378.745 kb on + strand, within IAI47_01730at 378.745 kb on + strand, within IAI47_01730at 378.746 kb on - strand, within IAI47_01730at 378.777 kb on - strand, within IAI47_01730at 379.090 kb on + strandat 379.134 kb on + strandat 379.135 kb on - strandat 379.143 kb on - strandat 379.157 kb on + strandat 379.157 kb on + strandat 379.157 kb on + strandat 379.158 kb on - strandat 379.191 kb on + strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.198 kb on - strand, within IAI47_01735at 379.233 kb on + strand, within IAI47_01735at 379.234 kb on - strand, within IAI47_01735at 379.234 kb on - strand, within IAI47_01735at 379.264 kb on + strand, within IAI47_01735at 379.264 kb on + strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.326 kb on + strand, within IAI47_01735at 379.327 kb on - strand, within IAI47_01735at 379.361 kb on + strand, within IAI47_01735at 379.361 kb on + strand, within IAI47_01735at 379.362 kb on - strand, within IAI47_01735at 379.362 kb on - strand, within IAI47_01735at 379.374 kb on + strand, within IAI47_01735at 379.374 kb on + strand, within IAI47_01735at 379.375 kb on - strand, within IAI47_01735at 379.375 kb on - strand, within IAI47_01735at 379.425 kb on + strand, within IAI47_01735at 379.426 kb on - strandat 379.432 kb on + strandat 379.433 kb on - strandat 379.438 kb on + strandat 379.438 kb on + strandat 379.438 kb on + strandat 379.438 kb on + strandat 379.438 kb on + strandat 379.438 kb on + strandat 379.439 kb on - strandat 379.439 kb on - strandat 379.439 kb on - strandat 379.439 kb on - strandat 379.439 kb on - strandat 379.439 kb on - strandat 379.455 kb on + strandat 379.456 kb on - strandat 379.465 kb on + strandat 379.471 kb on + strandat 379.471 kb on + strandat 379.472 kb on - strandat 379.472 kb on - strandat 379.691 kb on + strand, within IAI47_01740at 379.691 kb on + strand, within IAI47_01740at 379.846 kb on + strand, within IAI47_01740at 379.847 kb on - strand, within IAI47_01740at 379.863 kb on + strand, within IAI47_01740at 379.863 kb on + strand, within IAI47_01740at 379.864 kb on - strand, within IAI47_01740at 380.214 kb on + strand, within IAI47_01740at 380.326 kb on - strandat 380.341 kb on + strandat 380.342 kb on - strandat 380.355 kb on + strandat 380.355 kb on + strandat 380.355 kb on + strandat 380.355 kb on + strandat 380.356 kb on - strandat 380.356 kb on - strandat 380.356 kb on - strandat 380.435 kb on - strandat 380.435 kb on - strandat 380.435 kb on - strandat 380.440 kb on + strandat 380.441 kb on - strandat 380.452 kb on - strandat 380.518 kb on + strand, within IAI47_01745at 380.519 kb on - strand, within IAI47_01745at 380.580 kb on + strand, within IAI47_01745at 380.580 kb on + strand, within IAI47_01745at 380.580 kb on + strand, within IAI47_01745at 380.580 kb on + strand, within IAI47_01745at 380.581 kb on - strand, within IAI47_01745at 380.581 kb on - strand, within IAI47_01745at 380.581 kb on - strand, within IAI47_01745at 380.581 kb on - strand, within IAI47_01745at 380.587 kb on + strand, within IAI47_01745at 380.625 kb on + strand, within IAI47_01745at 380.625 kb on + strand, within IAI47_01745at 380.625 kb on + strand, within IAI47_01745at 380.626 kb on - strand, within IAI47_01745at 380.651 kb on - strand, within IAI47_01745at 380.651 kb on - strand, within IAI47_01745at 380.782 kb on + strand, within IAI47_01745at 380.782 kb on + strand, within IAI47_01745at 380.782 kb on + strand, within IAI47_01745at 380.782 kb on + strand, within IAI47_01745at 380.782 kb on + strand, within IAI47_01745at 380.783 kb on - strand, within IAI47_01745at 380.878 kb on + strand, within IAI47_01745at 380.878 kb on + strand, within IAI47_01745at 380.878 kb on + strand, within IAI47_01745at 380.879 kb on - strand, within IAI47_01745at 380.926 kb on + strand, within IAI47_01745at 380.926 kb on + strand, within IAI47_01745at 380.926 kb on + strand, within IAI47_01745at 380.927 kb on - strand, within IAI47_01745at 380.927 kb on - strand, within IAI47_01745at 380.937 kb on + strand, within IAI47_01745at 380.938 kb on - strand, within IAI47_01745at 380.968 kb on + strand, within IAI47_01745at 380.969 kb on - strand, within IAI47_01745at 381.022 kb on + strand, within IAI47_01745at 381.023 kb on - strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.024 kb on + strand, within IAI47_01745at 381.025 kb on - strand, within IAI47_01745at 381.025 kb on - strand, within IAI47_01745at 381.025 kb on - strand, within IAI47_01745at 381.025 kb on - strand, within IAI47_01745at 381.025 kb on - strand, within IAI47_01745at 381.025 kb on - strand, within IAI47_01745at 381.025 kb on - strand, within IAI47_01745at 381.025 kb on - strand, within IAI47_01745at 381.025 kb on - strand, within IAI47_01745at 381.128 kb on - strand, within IAI47_01745at 381.128 kb on - strand, within IAI47_01745at 381.162 kb on + strand, within IAI47_01745at 381.162 kb on + strand, within IAI47_01745at 381.163 kb on - strand, within IAI47_01745at 381.196 kb on + strand, within IAI47_01745at 381.197 kb on - strand, within IAI47_01745at 381.197 kb on - strand, within IAI47_01745at 381.215 kb on - strand, within IAI47_01745at 381.240 kb on + strand, within IAI47_01745at 381.240 kb on + strand, within IAI47_01745at 381.240 kb on + strand, within IAI47_01745at 381.240 kb on + strand, within IAI47_01745at 381.241 kb on - strand, within IAI47_01745at 381.241 kb on - strand, within IAI47_01745at 381.250 kb on + strand, within IAI47_01745at 381.274 kb on + strand, within IAI47_01745at 381.274 kb on + strand, within IAI47_01745at 381.275 kb on - strand, within IAI47_01745at 381.275 kb on - strand, within IAI47_01745at 381.275 kb on - strand, within IAI47_01745at 381.286 kb on + strand, within IAI47_01745at 381.287 kb on - strand, within IAI47_01745at 381.287 kb on - strand, within IAI47_01745at 381.287 kb on - strand, within IAI47_01745at 381.308 kb on - strand, within IAI47_01745

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3
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378,465 - IAI47_01730 0.16 -0.3
378,465 - IAI47_01730 0.16 +0.3
378,498 - IAI47_01730 0.20 +1.4
378,498 - IAI47_01730 0.20 +1.1
378,498 - IAI47_01730 0.20 -0.0
378,566 + IAI47_01730 0.28 -2.7
378,566 + IAI47_01730 0.28 +0.1
378,589 + IAI47_01730 0.31 -0.6
378,589 + IAI47_01730 0.31 -1.1
378,589 + IAI47_01730 0.31 -0.1
378,589 + IAI47_01730 0.31 -1.7
378,589 + IAI47_01730 0.31 +1.7
378,590 - IAI47_01730 0.31 +0.4
378,590 - IAI47_01730 0.31 -0.3
378,590 - IAI47_01730 0.31 +0.8
378,590 - IAI47_01730 0.31 +1.1
378,667 + IAI47_01730 0.40 +0.6
378,667 + IAI47_01730 0.40 -1.7
378,668 - IAI47_01730 0.41 +0.6
378,668 - IAI47_01730 0.41 -0.2
378,668 - IAI47_01730 0.41 -1.2
378,668 - IAI47_01730 0.41 +1.5
378,689 + IAI47_01730 0.43 -1.3
378,689 + IAI47_01730 0.43 -0.9
378,690 - IAI47_01730 0.43 +0.3
378,745 + IAI47_01730 0.50 +0.1
378,745 + IAI47_01730 0.50 -0.9
378,746 - IAI47_01730 0.50 +0.8
378,777 - IAI47_01730 0.54 +0.7
379,090 + -0.5
379,134 + -0.7
379,135 - +0.1
379,143 - +0.4
379,157 + +0.2
379,157 + +1.0
379,157 + -0.2
379,158 - +0.8
379,191 + IAI47_01735 0.12 -1.1
379,192 - IAI47_01735 0.12 -0.4
379,192 - IAI47_01735 0.12 +0.8
379,192 - IAI47_01735 0.12 +1.7
379,198 - IAI47_01735 0.14 -0.3
379,233 + IAI47_01735 0.26 +0.1
379,234 - IAI47_01735 0.26 -0.3
379,234 - IAI47_01735 0.26 +1.5
379,264 + IAI47_01735 0.36 -0.4
379,264 + IAI47_01735 0.36 -0.3
379,265 - IAI47_01735 0.36 +0.0
379,265 - IAI47_01735 0.36 -0.4
379,265 - IAI47_01735 0.36 +2.0
379,265 - IAI47_01735 0.36 -0.4
379,326 + IAI47_01735 0.57 +0.1
379,327 - IAI47_01735 0.57 +1.3
379,361 + IAI47_01735 0.68 -1.4
379,361 + IAI47_01735 0.68 -0.4
379,362 - IAI47_01735 0.69 -0.0
379,362 - IAI47_01735 0.69 -1.9
379,374 + IAI47_01735 0.73 +0.9
379,374 + IAI47_01735 0.73 +0.5
379,375 - IAI47_01735 0.73 +0.7
379,375 - IAI47_01735 0.73 -0.7
379,425 + IAI47_01735 0.90 +0.7
379,426 - +0.7
379,432 + -1.3
379,433 - +0.7
379,438 + -0.7
379,438 + +1.1
379,438 + -0.5
379,438 + -0.4
379,438 + -0.2
379,438 + -0.7
379,439 - -0.2
379,439 - +0.1
379,439 - +0.1
379,439 - +0.1
379,439 - -0.3
379,439 - +1.9
379,455 + +0.1
379,456 - -1.0
379,465 + +0.6
379,471 + -0.6
379,471 + -0.7
379,472 - +0.3
379,472 - -0.9
379,691 + IAI47_01740 0.26 -0.1
379,691 + IAI47_01740 0.26 -0.9
379,846 + IAI47_01740 0.44 +0.1
379,847 - IAI47_01740 0.44 +0.1
379,863 + IAI47_01740 0.46 +1.1
379,863 + IAI47_01740 0.46 +1.4
379,864 - IAI47_01740 0.46 +0.4
380,214 + IAI47_01740 0.87 -0.1
380,326 - +1.1
380,341 + +0.1
380,342 - +0.3
380,355 + -0.2
380,355 + +0.1
380,355 + -0.1
380,355 + +0.1
380,356 - +0.4
380,356 - -1.2
380,356 - -2.2
380,435 - -0.0
380,435 - -0.2
380,435 - -0.5
380,440 + +0.6
380,441 - -0.1
380,452 - +0.6
380,518 + IAI47_01745 0.12 +0.2
380,519 - IAI47_01745 0.12 +0.1
380,580 + IAI47_01745 0.15 -1.9
380,580 + IAI47_01745 0.15 -0.7
380,580 + IAI47_01745 0.15 +0.1
380,580 + IAI47_01745 0.15 -0.9
380,581 - IAI47_01745 0.16 +0.3
380,581 - IAI47_01745 0.16 +0.7
380,581 - IAI47_01745 0.16 -0.5
380,581 - IAI47_01745 0.16 +1.1
380,587 + IAI47_01745 0.16 -0.4
380,625 + IAI47_01745 0.18 +2.0
380,625 + IAI47_01745 0.18 +0.1
380,625 + IAI47_01745 0.18 -0.9
380,626 - IAI47_01745 0.18 +0.7
380,651 - IAI47_01745 0.20 +0.7
380,651 - IAI47_01745 0.20 +0.7
380,782 + IAI47_01745 0.28 -0.5
380,782 + IAI47_01745 0.28 +0.1
380,782 + IAI47_01745 0.28 -1.3
380,782 + IAI47_01745 0.28 +0.9
380,782 + IAI47_01745 0.28 +0.9
380,783 - IAI47_01745 0.28 -2.2
380,878 + IAI47_01745 0.33 -0.0
380,878 + IAI47_01745 0.33 +0.1
380,878 + IAI47_01745 0.33 +1.0
380,879 - IAI47_01745 0.34 +0.1
380,926 + IAI47_01745 0.36 +0.1
380,926 + IAI47_01745 0.36 +1.6
380,926 + IAI47_01745 0.36 -0.4
380,927 - IAI47_01745 0.36 +0.1
380,927 - IAI47_01745 0.36 -0.9
380,937 + IAI47_01745 0.37 +0.2
380,938 - IAI47_01745 0.37 +0.1
380,968 + IAI47_01745 0.39 +0.5
380,969 - IAI47_01745 0.39 +0.7
381,022 + IAI47_01745 0.42 +0.1
381,023 - IAI47_01745 0.42 -0.1
381,024 + IAI47_01745 0.42 -0.6
381,024 + IAI47_01745 0.42 +0.8
381,024 + IAI47_01745 0.42 -1.2
381,024 + IAI47_01745 0.42 -0.7
381,024 + IAI47_01745 0.42 +0.9
381,024 + IAI47_01745 0.42 +1.1
381,024 + IAI47_01745 0.42 +0.9
381,024 + IAI47_01745 0.42 +0.6
381,024 + IAI47_01745 0.42 +0.1
381,024 + IAI47_01745 0.42 -0.6
381,024 + IAI47_01745 0.42 +0.1
381,024 + IAI47_01745 0.42 +1.1
381,025 - IAI47_01745 0.42 +0.9
381,025 - IAI47_01745 0.42 +0.1
381,025 - IAI47_01745 0.42 -1.1
381,025 - IAI47_01745 0.42 +0.1
381,025 - IAI47_01745 0.42 +1.1
381,025 - IAI47_01745 0.42 -2.2
381,025 - IAI47_01745 0.42 -0.1
381,025 - IAI47_01745 0.42 -0.4
381,025 - IAI47_01745 0.42 +0.4
381,128 - IAI47_01745 0.49 -0.6
381,128 - IAI47_01745 0.49 +0.4
381,162 + IAI47_01745 0.51 +0.1
381,162 + IAI47_01745 0.51 -0.4
381,163 - IAI47_01745 0.51 +1.0
381,196 + IAI47_01745 0.53 +0.1
381,197 - IAI47_01745 0.53 +0.0
381,197 - IAI47_01745 0.53 +0.1
381,215 - IAI47_01745 0.54 +0.4
381,240 + IAI47_01745 0.55 +0.1
381,240 + IAI47_01745 0.55 +0.4
381,240 + IAI47_01745 0.55 +0.2
381,240 + IAI47_01745 0.55 +0.1
381,241 - IAI47_01745 0.55 +0.5
381,241 - IAI47_01745 0.55 -0.1
381,250 + IAI47_01745 0.56 +0.8
381,274 + IAI47_01745 0.57 -1.3
381,274 + IAI47_01745 0.57 -0.3
381,275 - IAI47_01745 0.57 +0.1
381,275 - IAI47_01745 0.57 -1.0
381,275 - IAI47_01745 0.57 +0.7
381,286 + IAI47_01745 0.58 -1.3
381,287 - IAI47_01745 0.58 +1.2
381,287 - IAI47_01745 0.58 +0.4
381,287 - IAI47_01745 0.58 +0.4
381,308 - IAI47_01745 0.59 +1.4

Or see this region's nucleotide sequence