Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01365 and IAI47_01370 are separated by 242 nucleotides IAI47_01370 and IAI47_01375 are separated by 7 nucleotides
IAI47_01365: IAI47_01365 - inorganic phosphate transporter PitA, at 294,272 to 295,774
_01365
IAI47_01370: IAI47_01370 - NAD(P)/FAD-dependent oxidoreductase, at 296,017 to 297,201
_01370
IAI47_01375: IAI47_01375 - aldo/keto reductase, at 297,209 to 298,195
_01375
Position (kb) 296
297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 295.108 kb on - strand, within IAI47_01365 at 295.201 kb on + strand, within IAI47_01365 at 295.541 kb on - strand at 295.541 kb on - strand at 295.645 kb on - strand at 295.739 kb on - strand at 295.752 kb on - strand at 295.769 kb on + strand at 295.774 kb on + strand at 295.857 kb on + strand at 295.857 kb on + strand at 295.857 kb on + strand at 295.857 kb on + strand at 295.907 kb on + strand at 295.907 kb on + strand at 295.912 kb on - strand at 295.912 kb on - strand at 295.912 kb on - strand at 295.912 kb on - strand at 295.914 kb on + strand at 295.922 kb on + strand at 295.927 kb on + strand at 295.928 kb on - strand at 295.981 kb on - strand at 296.001 kb on + strand at 296.001 kb on + strand at 296.002 kb on - strand at 296.034 kb on + strand at 296.106 kb on - strand at 296.106 kb on - strand at 296.182 kb on + strand, within IAI47_01370 at 296.183 kb on - strand, within IAI47_01370 at 296.200 kb on + strand, within IAI47_01370 at 296.201 kb on - strand, within IAI47_01370 at 296.201 kb on - strand, within IAI47_01370 at 296.201 kb on - strand, within IAI47_01370 at 296.201 kb on - strand, within IAI47_01370 at 296.227 kb on - strand, within IAI47_01370 at 296.227 kb on - strand, within IAI47_01370 at 296.245 kb on + strand, within IAI47_01370 at 296.245 kb on + strand, within IAI47_01370 at 296.246 kb on - strand, within IAI47_01370 at 296.246 kb on - strand, within IAI47_01370 at 296.247 kb on + strand, within IAI47_01370 at 296.247 kb on + strand, within IAI47_01370 at 296.247 kb on + strand, within IAI47_01370 at 296.247 kb on + strand, within IAI47_01370 at 296.248 kb on - strand, within IAI47_01370 at 296.263 kb on - strand, within IAI47_01370 at 296.263 kb on - strand, within IAI47_01370 at 296.263 kb on - strand, within IAI47_01370 at 296.268 kb on + strand, within IAI47_01370 at 296.274 kb on + strand, within IAI47_01370 at 296.437 kb on + strand, within IAI47_01370 at 296.437 kb on + strand, within IAI47_01370 at 296.437 kb on + strand, within IAI47_01370 at 296.438 kb on - strand, within IAI47_01370 at 296.438 kb on - strand, within IAI47_01370 at 296.569 kb on + strand, within IAI47_01370 at 296.569 kb on + strand, within IAI47_01370 at 296.570 kb on - strand, within IAI47_01370 at 296.598 kb on + strand, within IAI47_01370 at 296.598 kb on + strand, within IAI47_01370 at 296.598 kb on + strand, within IAI47_01370 at 296.599 kb on - strand, within IAI47_01370 at 296.607 kb on + strand, within IAI47_01370 at 296.607 kb on + strand, within IAI47_01370 at 296.607 kb on + strand, within IAI47_01370 at 296.607 kb on + strand, within IAI47_01370 at 296.607 kb on + strand, within IAI47_01370 at 296.607 kb on + strand, within IAI47_01370 at 296.608 kb on - strand, within IAI47_01370 at 296.608 kb on - strand, within IAI47_01370 at 296.608 kb on - strand, within IAI47_01370 at 296.627 kb on + strand, within IAI47_01370 at 296.627 kb on + strand, within IAI47_01370 at 296.627 kb on + strand, within IAI47_01370 at 296.627 kb on + strand, within IAI47_01370 at 296.627 kb on + strand, within IAI47_01370 at 296.628 kb on - strand, within IAI47_01370 at 296.628 kb on - strand, within IAI47_01370 at 296.628 kb on - strand, within IAI47_01370 at 296.628 kb on - strand, within IAI47_01370 at 296.679 kb on + strand, within IAI47_01370 at 296.688 kb on + strand, within IAI47_01370 at 296.688 kb on + strand, within IAI47_01370 at 296.735 kb on + strand, within IAI47_01370 at 296.752 kb on + strand, within IAI47_01370 at 296.753 kb on - strand, within IAI47_01370 at 296.898 kb on - strand, within IAI47_01370 at 296.898 kb on - strand, within IAI47_01370 at 296.898 kb on - strand, within IAI47_01370 at 296.898 kb on - strand, within IAI47_01370 at 296.898 kb on - strand, within IAI47_01370 at 297.016 kb on + strand, within IAI47_01370 at 297.047 kb on + strand, within IAI47_01370 at 297.048 kb on - strand, within IAI47_01370 at 297.103 kb on + strand at 297.103 kb on + strand at 297.103 kb on + strand at 297.104 kb on - strand at 297.104 kb on - strand at 297.104 kb on - strand at 297.104 kb on - strand at 297.108 kb on + strand at 297.109 kb on - strand at 297.109 kb on - strand at 297.109 kb on - strand at 297.109 kb on - strand at 297.109 kb on - strand at 297.109 kb on - strand at 297.148 kb on + strand at 297.148 kb on + strand at 297.148 kb on + strand at 297.148 kb on + strand at 297.148 kb on + strand at 297.149 kb on - strand at 297.149 kb on - strand at 297.149 kb on - strand at 297.150 kb on + strand at 297.150 kb on + strand at 297.150 kb on + strand at 297.150 kb on + strand at 297.150 kb on + strand at 297.150 kb on + strand at 297.150 kb on + strand at 297.150 kb on + strand at 297.150 kb on + strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.199 kb on + strand at 297.199 kb on + strand at 297.200 kb on - strand at 297.249 kb on + strand at 297.249 kb on + strand at 297.250 kb on - strand at 297.250 kb on - strand at 297.274 kb on + strand at 297.274 kb on + strand at 297.275 kb on - strand at 297.462 kb on + strand, within IAI47_01375 at 297.462 kb on + strand, within IAI47_01375 at 297.462 kb on + strand, within IAI47_01375 at 297.462 kb on + strand, within IAI47_01375 at 297.462 kb on + strand, within IAI47_01375 at 297.463 kb on - strand, within IAI47_01375 at 297.463 kb on - strand, within IAI47_01375 at 297.463 kb on - strand, within IAI47_01375 at 297.463 kb on - strand, within IAI47_01375 at 297.463 kb on - strand, within IAI47_01375 at 297.463 kb on - strand, within IAI47_01375 at 297.509 kb on - strand, within IAI47_01375 at 297.509 kb on - strand, within IAI47_01375 at 297.669 kb on + strand, within IAI47_01375 at 297.669 kb on + strand, within IAI47_01375 at 297.748 kb on - strand, within IAI47_01375 at 297.748 kb on - strand, within IAI47_01375 at 297.807 kb on + strand, within IAI47_01375 at 297.807 kb on + strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.810 kb on + strand, within IAI47_01375 at 297.810 kb on + strand, within IAI47_01375 at 297.810 kb on + strand, within IAI47_01375 at 297.810 kb on + strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.887 kb on - strand, within IAI47_01375 at 297.913 kb on - strand, within IAI47_01375 at 297.913 kb on - strand, within IAI47_01375 at 297.913 kb on - strand, within IAI47_01375 at 298.029 kb on + strand, within IAI47_01375 at 298.029 kb on + strand, within IAI47_01375 at 298.030 kb on - strand, within IAI47_01375 at 298.030 kb on - strand, within IAI47_01375 at 298.030 kb on - strand, within IAI47_01375 at 298.042 kb on + strand, within IAI47_01375 at 298.043 kb on - strand, within IAI47_01375 at 298.048 kb on + strand, within IAI47_01375 at 298.049 kb on - strand, within IAI47_01375 at 298.049 kb on - strand, within IAI47_01375 at 298.049 kb on - strand, within IAI47_01375
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 295,108 - IAI47_01365 0.56 -1.8 295,201 + IAI47_01365 0.62 -1.4 295,541 - -1.4 295,541 - +0.2 295,645 - -2.6 295,739 - -2.8 295,752 - -3.3 295,769 + -1.4 295,774 + -1.4 295,857 + +0.2 295,857 + -2.0 295,857 + +0.2 295,857 + -2.4 295,907 + +0.2 295,907 + +1.1 295,912 - +0.6 295,912 - +0.8 295,912 - -1.4 295,912 - +0.6 295,914 + -0.6 295,922 + +0.2 295,927 + -0.3 295,928 - +0.0 295,981 - +0.8 296,001 + -1.6 296,001 + -0.3 296,002 - -0.8 296,034 + +0.5 296,106 - -1.3 296,106 - -0.4 296,182 + IAI47_01370 0.14 +0.2 296,183 - IAI47_01370 0.14 -1.6 296,200 + IAI47_01370 0.15 +0.8 296,201 - IAI47_01370 0.16 +0.2 296,201 - IAI47_01370 0.16 -0.8 296,201 - IAI47_01370 0.16 +0.2 296,201 - IAI47_01370 0.16 -0.0 296,227 - IAI47_01370 0.18 +0.6 296,227 - IAI47_01370 0.18 -0.2 296,245 + IAI47_01370 0.19 +0.1 296,245 + IAI47_01370 0.19 -0.8 296,246 - IAI47_01370 0.19 +0.1 296,246 - IAI47_01370 0.19 -0.8 296,247 + IAI47_01370 0.19 +0.1 296,247 + IAI47_01370 0.19 -0.1 296,247 + IAI47_01370 0.19 -0.2 296,247 + IAI47_01370 0.19 +1.0 296,248 - IAI47_01370 0.19 -0.2 296,263 - IAI47_01370 0.21 +0.5 296,263 - IAI47_01370 0.21 -0.6 296,263 - IAI47_01370 0.21 -0.6 296,268 + IAI47_01370 0.21 -1.3 296,274 + IAI47_01370 0.22 -0.4 296,437 + IAI47_01370 0.35 -0.8 296,437 + IAI47_01370 0.35 +0.4 296,437 + IAI47_01370 0.35 -1.2 296,438 - IAI47_01370 0.36 +0.6 296,438 - IAI47_01370 0.36 -0.7 296,569 + IAI47_01370 0.47 -0.7 296,569 + IAI47_01370 0.47 -0.7 296,570 - IAI47_01370 0.47 -0.5 296,598 + IAI47_01370 0.49 -0.2 296,598 + IAI47_01370 0.49 +1.3 296,598 + IAI47_01370 0.49 -0.3 296,599 - IAI47_01370 0.49 -0.4 296,607 + IAI47_01370 0.50 +1.0 296,607 + IAI47_01370 0.50 -0.7 296,607 + IAI47_01370 0.50 +0.7 296,607 + IAI47_01370 0.50 -0.6 296,607 + IAI47_01370 0.50 +1.4 296,607 + IAI47_01370 0.50 +0.8 296,608 - IAI47_01370 0.50 +3.0 296,608 - IAI47_01370 0.50 -2.6 296,608 - IAI47_01370 0.50 -0.2 296,627 + IAI47_01370 0.51 -1.2 296,627 + IAI47_01370 0.51 +0.2 296,627 + IAI47_01370 0.51 -0.3 296,627 + IAI47_01370 0.51 +1.0 296,627 + IAI47_01370 0.51 +0.6 296,628 - IAI47_01370 0.52 -0.6 296,628 - IAI47_01370 0.52 -0.4 296,628 - IAI47_01370 0.52 -1.4 296,628 - IAI47_01370 0.52 -0.6 296,679 + IAI47_01370 0.56 -0.1 296,688 + IAI47_01370 0.57 -0.6 296,688 + IAI47_01370 0.57 +1.5 296,735 + IAI47_01370 0.61 -0.6 296,752 + IAI47_01370 0.62 -0.1 296,753 - IAI47_01370 0.62 -0.8 296,898 - IAI47_01370 0.74 -0.6 296,898 - IAI47_01370 0.74 -0.1 296,898 - IAI47_01370 0.74 +0.4 296,898 - IAI47_01370 0.74 +0.5 296,898 - IAI47_01370 0.74 -0.1 297,016 + IAI47_01370 0.84 +0.4 297,047 + IAI47_01370 0.87 -0.8 297,048 - IAI47_01370 0.87 -1.8 297,103 + -0.4 297,103 + +0.2 297,103 + -0.2 297,104 - +1.6 297,104 - -0.8 297,104 - +0.2 297,104 - +0.1 297,108 + -2.2 297,109 - +0.5 297,109 - -0.2 297,109 - -0.2 297,109 - +0.0 297,109 - +1.2 297,109 - -0.7 297,148 + +0.8 297,148 + +2.5 297,148 + +1.3 297,148 + +0.2 297,148 + +1.4 297,149 - -0.1 297,149 - -0.7 297,149 - +0.1 297,150 + +1.6 297,150 + -0.6 297,150 + -0.3 297,150 + -0.6 297,150 + -0.2 297,150 + +0.2 297,150 + -1.1 297,150 + -0.8 297,150 + -0.3 297,151 - +1.8 297,151 - -0.6 297,151 - -0.1 297,151 - -0.7 297,151 - -0.5 297,151 - +0.2 297,151 - -0.5 297,151 - +0.7 297,151 - +0.2 297,151 - +0.6 297,151 - +0.6 297,151 - +1.0 297,199 + +0.9 297,199 + -0.1 297,200 - -0.9 297,249 + +1.2 297,249 + +1.8 297,250 - +0.2 297,250 - +0.8 297,274 + +2.3 297,274 + +0.9 297,275 - +1.2 297,462 + IAI47_01375 0.26 -1.3 297,462 + IAI47_01375 0.26 -0.0 297,462 + IAI47_01375 0.26 -0.2 297,462 + IAI47_01375 0.26 -0.7 297,462 + IAI47_01375 0.26 -0.1 297,463 - IAI47_01375 0.26 -0.5 297,463 - IAI47_01375 0.26 +0.4 297,463 - IAI47_01375 0.26 +0.5 297,463 - IAI47_01375 0.26 -2.0 297,463 - IAI47_01375 0.26 +0.9 297,463 - IAI47_01375 0.26 +0.2 297,509 - IAI47_01375 0.30 -0.6 297,509 - IAI47_01375 0.30 +0.8 297,669 + IAI47_01375 0.47 +1.2 297,669 + IAI47_01375 0.47 -0.1 297,748 - IAI47_01375 0.55 -0.2 297,748 - IAI47_01375 0.55 +0.4 297,807 + IAI47_01375 0.61 +0.7 297,807 + IAI47_01375 0.61 -1.0 297,808 - IAI47_01375 0.61 -0.7 297,808 - IAI47_01375 0.61 +1.3 297,808 - IAI47_01375 0.61 +1.2 297,808 - IAI47_01375 0.61 -0.7 297,808 - IAI47_01375 0.61 -0.4 297,808 - IAI47_01375 0.61 -0.8 297,808 - IAI47_01375 0.61 -0.2 297,808 - IAI47_01375 0.61 -0.1 297,810 + IAI47_01375 0.61 -0.4 297,810 + IAI47_01375 0.61 -0.2 297,810 + IAI47_01375 0.61 +1.4 297,810 + IAI47_01375 0.61 +1.3 297,811 - IAI47_01375 0.61 -0.3 297,811 - IAI47_01375 0.61 -0.9 297,811 - IAI47_01375 0.61 +0.0 297,811 - IAI47_01375 0.61 -0.2 297,811 - IAI47_01375 0.61 +0.2 297,811 - IAI47_01375 0.61 +0.0 297,887 - IAI47_01375 0.69 -0.1 297,913 - IAI47_01375 0.71 -0.1 297,913 - IAI47_01375 0.71 +0.0 297,913 - IAI47_01375 0.71 +0.9 298,029 + IAI47_01375 0.83 +1.1 298,029 + IAI47_01375 0.83 +0.8 298,030 - IAI47_01375 0.83 +0.6 298,030 - IAI47_01375 0.83 +0.5 298,030 - IAI47_01375 0.83 +1.8 298,042 + IAI47_01375 0.84 -1.3 298,043 - IAI47_01375 0.84 -0.2 298,048 + IAI47_01375 0.85 -0.2 298,049 - IAI47_01375 0.85 +1.0 298,049 - IAI47_01375 0.85 -1.4 298,049 - IAI47_01375 0.85 +0.2
Or see this region's nucleotide sequence