Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01350 and IAI47_01355 are separated by 56 nucleotides IAI47_01355 and IAI47_01360 are separated by 414 nucleotides IAI47_01360 and IAI47_01365 are separated by 37 nucleotides
IAI47_01350: IAI47_01350 - 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ, at 292,244 to 292,990
_01350
IAI47_01355: IAI47_01355 - universal stress protein UspA, at 293,047 to 293,484
_01355
IAI47_01360: IAI47_01360 - universal stress protein UspB, at 293,899 to 294,234
_01360
IAI47_01365: IAI47_01365 - inorganic phosphate transporter PitA, at 294,272 to 295,774
_01365
Position (kb) 293
294
295 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 292.907 kb on + strand, within IAI47_01350 at 292.907 kb on + strand, within IAI47_01350 at 292.907 kb on + strand, within IAI47_01350 at 292.908 kb on - strand, within IAI47_01350 at 292.908 kb on - strand, within IAI47_01350 at 292.908 kb on - strand, within IAI47_01350 at 292.908 kb on - strand, within IAI47_01350 at 292.908 kb on - strand, within IAI47_01350 at 292.972 kb on + strand at 292.972 kb on + strand at 292.972 kb on + strand at 292.972 kb on + strand at 292.972 kb on + strand at 292.973 kb on - strand at 292.973 kb on - strand at 292.973 kb on - strand at 292.973 kb on - strand at 292.973 kb on - strand at 292.973 kb on - strand at 292.976 kb on + strand at 292.976 kb on + strand at 292.976 kb on + strand at 292.976 kb on + strand at 292.976 kb on + strand at 292.976 kb on + strand at 292.976 kb on + strand at 292.977 kb on - strand at 292.977 kb on - strand at 292.977 kb on - strand at 292.995 kb on - strand at 292.996 kb on + strand at 293.023 kb on + strand at 293.023 kb on + strand at 293.024 kb on - strand at 293.091 kb on + strand, within IAI47_01355 at 293.100 kb on + strand, within IAI47_01355 at 293.100 kb on + strand, within IAI47_01355 at 293.100 kb on + strand, within IAI47_01355 at 293.101 kb on - strand, within IAI47_01355 at 293.180 kb on + strand, within IAI47_01355 at 293.180 kb on + strand, within IAI47_01355 at 293.180 kb on + strand, within IAI47_01355 at 293.180 kb on + strand, within IAI47_01355 at 293.180 kb on + strand, within IAI47_01355 at 293.181 kb on - strand, within IAI47_01355 at 293.181 kb on - strand, within IAI47_01355 at 293.181 kb on - strand, within IAI47_01355 at 293.301 kb on + strand, within IAI47_01355 at 293.301 kb on + strand, within IAI47_01355 at 293.302 kb on - strand, within IAI47_01355 at 293.313 kb on + strand, within IAI47_01355 at 293.313 kb on + strand, within IAI47_01355 at 293.313 kb on + strand, within IAI47_01355 at 293.313 kb on + strand, within IAI47_01355 at 293.313 kb on + strand, within IAI47_01355 at 293.314 kb on - strand, within IAI47_01355 at 293.320 kb on + strand, within IAI47_01355 at 293.345 kb on + strand, within IAI47_01355 at 293.358 kb on - strand, within IAI47_01355 at 293.358 kb on - strand, within IAI47_01355 at 293.397 kb on - strand, within IAI47_01355 at 293.397 kb on - strand, within IAI47_01355 at 293.455 kb on + strand at 293.455 kb on + strand at 293.455 kb on + strand at 293.456 kb on - strand at 293.456 kb on - strand at 293.475 kb on + strand at 293.475 kb on + strand at 293.475 kb on + strand at 293.476 kb on - strand at 293.476 kb on - strand at 293.476 kb on - strand at 293.476 kb on - strand at 293.476 kb on - strand at 293.476 kb on - strand at 293.477 kb on + strand at 293.477 kb on + strand at 293.477 kb on + strand at 293.478 kb on - strand at 293.478 kb on - strand at 293.478 kb on - strand at 293.478 kb on - strand at 293.478 kb on - strand at 293.478 kb on - strand at 293.487 kb on + strand at 293.487 kb on + strand at 293.487 kb on + strand at 293.488 kb on - strand at 293.508 kb on - strand at 293.544 kb on + strand at 293.545 kb on - strand at 293.618 kb on + strand at 293.618 kb on + strand at 293.619 kb on - strand at 293.620 kb on + strand at 293.620 kb on + strand at 293.620 kb on + strand at 293.620 kb on + strand at 293.621 kb on - strand at 293.621 kb on - strand at 293.629 kb on + strand at 293.629 kb on + strand at 293.630 kb on - strand at 293.630 kb on - strand at 293.630 kb on - strand at 293.631 kb on + strand at 293.631 kb on + strand at 293.632 kb on - strand at 293.632 kb on - strand at 293.632 kb on - strand at 293.632 kb on - strand at 293.632 kb on - strand at 293.647 kb on + strand at 293.647 kb on + strand at 293.673 kb on - strand at 293.678 kb on + strand at 293.678 kb on + strand at 293.678 kb on + strand at 293.679 kb on - strand at 293.679 kb on - strand at 293.679 kb on - strand at 293.679 kb on - strand at 293.679 kb on - strand at 293.691 kb on - strand at 293.702 kb on - strand at 293.702 kb on - strand at 293.702 kb on - strand at 293.751 kb on + strand at 293.751 kb on + strand at 293.752 kb on - strand at 293.898 kb on + strand at 293.898 kb on + strand at 293.898 kb on + strand at 293.898 kb on + strand at 293.898 kb on + strand at 293.898 kb on + strand at 293.899 kb on - strand at 293.899 kb on - strand at 293.899 kb on - strand at 293.899 kb on - strand at 293.899 kb on - strand at 293.899 kb on - strand at 293.899 kb on - strand at 293.899 kb on - strand at 293.899 kb on - strand at 293.910 kb on + strand at 293.910 kb on + strand at 293.911 kb on - strand at 293.911 kb on - strand at 293.943 kb on + strand, within IAI47_01360 at 293.943 kb on + strand, within IAI47_01360 at 293.943 kb on + strand, within IAI47_01360 at 293.943 kb on + strand, within IAI47_01360 at 293.944 kb on - strand, within IAI47_01360 at 293.944 kb on - strand, within IAI47_01360 at 293.944 kb on - strand, within IAI47_01360 at 293.944 kb on - strand, within IAI47_01360 at 293.944 kb on - strand, within IAI47_01360 at 293.952 kb on + strand, within IAI47_01360 at 293.952 kb on + strand, within IAI47_01360 at 293.952 kb on + strand, within IAI47_01360 at 293.984 kb on + strand, within IAI47_01360 at 293.984 kb on + strand, within IAI47_01360 at 293.993 kb on + strand, within IAI47_01360 at 293.997 kb on - strand, within IAI47_01360 at 294.019 kb on + strand, within IAI47_01360 at 294.019 kb on + strand, within IAI47_01360 at 294.019 kb on + strand, within IAI47_01360 at 294.020 kb on - strand, within IAI47_01360 at 294.020 kb on - strand, within IAI47_01360 at 294.020 kb on - strand, within IAI47_01360 at 294.020 kb on - strand, within IAI47_01360 at 294.025 kb on + strand, within IAI47_01360 at 294.025 kb on + strand, within IAI47_01360 at 294.025 kb on + strand, within IAI47_01360 at 294.025 kb on + strand, within IAI47_01360 at 294.025 kb on + strand, within IAI47_01360 at 294.025 kb on + strand, within IAI47_01360 at 294.025 kb on + strand, within IAI47_01360 at 294.025 kb on + strand, within IAI47_01360 at 294.026 kb on - strand, within IAI47_01360 at 294.026 kb on - strand, within IAI47_01360 at 294.026 kb on - strand, within IAI47_01360 at 294.026 kb on - strand, within IAI47_01360 at 294.026 kb on - strand, within IAI47_01360 at 294.026 kb on - strand, within IAI47_01360 at 294.026 kb on - strand, within IAI47_01360 at 294.026 kb on - strand, within IAI47_01360 at 294.026 kb on - strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.091 kb on + strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.092 kb on - strand, within IAI47_01360 at 294.093 kb on + strand, within IAI47_01360 at 294.093 kb on + strand, within IAI47_01360 at 294.093 kb on + strand, within IAI47_01360 at 294.093 kb on + strand, within IAI47_01360 at 294.093 kb on + strand, within IAI47_01360 at 294.093 kb on + strand, within IAI47_01360 at 294.093 kb on + strand, within IAI47_01360 at 294.094 kb on - strand, within IAI47_01360 at 294.094 kb on - strand, within IAI47_01360 at 294.094 kb on - strand, within IAI47_01360 at 294.094 kb on - strand, within IAI47_01360 at 294.094 kb on - strand, within IAI47_01360 at 294.094 kb on - strand, within IAI47_01360 at 294.094 kb on - strand, within IAI47_01360 at 294.135 kb on + strand, within IAI47_01360 at 294.136 kb on - strand, within IAI47_01360 at 294.136 kb on - strand, within IAI47_01360 at 294.202 kb on - strand at 294.513 kb on + strand, within IAI47_01365 at 294.514 kb on - strand, within IAI47_01365 at 294.578 kb on - strand, within IAI47_01365 at 294.664 kb on + strand, within IAI47_01365 at 294.904 kb on + strand, within IAI47_01365 at 295.108 kb on - strand, within IAI47_01365 at 295.201 kb on + strand, within IAI47_01365
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 292,907 + IAI47_01350 0.89 -0.2 292,907 + IAI47_01350 0.89 +0.4 292,907 + IAI47_01350 0.89 -0.4 292,908 - IAI47_01350 0.89 +1.8 292,908 - IAI47_01350 0.89 -1.1 292,908 - IAI47_01350 0.89 -1.4 292,908 - IAI47_01350 0.89 -0.1 292,908 - IAI47_01350 0.89 +0.4 292,972 + -1.7 292,972 + -1.1 292,972 + -0.1 292,972 + -1.1 292,972 + -0.2 292,973 - -0.7 292,973 - -1.3 292,973 - -0.7 292,973 - -0.3 292,973 - -1.6 292,973 - -0.1 292,976 + -0.7 292,976 + +1.3 292,976 + -0.2 292,976 + -0.8 292,976 + +1.2 292,976 + -0.9 292,976 + -0.0 292,977 - -0.2 292,977 - -1.4 292,977 - -0.2 292,995 - +1.1 292,996 + +0.2 293,023 + -0.8 293,023 + +0.2 293,024 - -0.4 293,091 + IAI47_01355 0.10 -1.6 293,100 + IAI47_01355 0.12 -0.9 293,100 + IAI47_01355 0.12 -1.0 293,100 + IAI47_01355 0.12 +0.2 293,101 - IAI47_01355 0.12 -0.5 293,180 + IAI47_01355 0.30 +0.2 293,180 + IAI47_01355 0.30 -1.2 293,180 + IAI47_01355 0.30 +2.0 293,180 + IAI47_01355 0.30 -0.3 293,180 + IAI47_01355 0.30 +0.8 293,181 - IAI47_01355 0.31 -0.1 293,181 - IAI47_01355 0.31 +0.2 293,181 - IAI47_01355 0.31 +0.3 293,301 + IAI47_01355 0.58 +0.5 293,301 + IAI47_01355 0.58 +0.2 293,302 - IAI47_01355 0.58 -0.1 293,313 + IAI47_01355 0.61 -0.3 293,313 + IAI47_01355 0.61 -0.1 293,313 + IAI47_01355 0.61 +0.5 293,313 + IAI47_01355 0.61 +0.3 293,313 + IAI47_01355 0.61 +0.2 293,314 - IAI47_01355 0.61 +0.8 293,320 + IAI47_01355 0.62 -0.8 293,345 + IAI47_01355 0.68 -0.4 293,358 - IAI47_01355 0.71 +1.4 293,358 - IAI47_01355 0.71 +2.8 293,397 - IAI47_01355 0.80 +0.7 293,397 - IAI47_01355 0.80 -1.4 293,455 + -1.2 293,455 + -0.7 293,455 + -0.2 293,456 - -1.2 293,456 - -1.0 293,475 + +0.0 293,475 + -0.2 293,475 + +1.2 293,476 - +1.2 293,476 - +0.4 293,476 - -0.8 293,476 - -0.3 293,476 - +0.8 293,476 - +1.2 293,477 + -0.5 293,477 + +0.7 293,477 + -0.4 293,478 - +1.2 293,478 - +0.8 293,478 - +0.2 293,478 - +0.8 293,478 - +1.2 293,478 - -0.5 293,487 + -1.0 293,487 + -0.8 293,487 + -0.3 293,488 - +2.3 293,508 - +1.8 293,544 + +0.8 293,545 - -0.5 293,618 + -0.2 293,618 + -1.6 293,619 - -1.6 293,620 + -1.4 293,620 + -0.7 293,620 + +0.5 293,620 + +1.2 293,621 - -0.5 293,621 - +0.4 293,629 + +1.1 293,629 + -1.6 293,630 - -0.2 293,630 - +1.3 293,630 - +1.2 293,631 + -1.8 293,631 + +1.2 293,632 - -0.5 293,632 - -0.8 293,632 - +1.6 293,632 - +1.2 293,632 - -0.0 293,647 + +0.0 293,647 + +0.6 293,673 - +0.2 293,678 + -0.5 293,678 + -1.4 293,678 + +0.3 293,679 - -0.4 293,679 - -0.2 293,679 - -0.6 293,679 - -0.7 293,679 - -0.1 293,691 - +0.8 293,702 - +0.6 293,702 - -0.5 293,702 - +0.3 293,751 + -1.0 293,751 + +0.2 293,752 - -0.7 293,898 + -0.1 293,898 + -0.9 293,898 + -1.2 293,898 + +1.8 293,898 + -1.2 293,898 + -1.2 293,899 - +0.2 293,899 - +1.2 293,899 - +0.8 293,899 - +1.3 293,899 - -0.2 293,899 - +1.6 293,899 - +0.9 293,899 - -0.3 293,899 - +0.5 293,910 + -0.5 293,910 + +1.3 293,911 - +1.3 293,911 - -0.1 293,943 + IAI47_01360 0.13 -0.2 293,943 + IAI47_01360 0.13 -0.4 293,943 + IAI47_01360 0.13 -1.8 293,943 + IAI47_01360 0.13 -0.3 293,944 - IAI47_01360 0.13 +0.2 293,944 - IAI47_01360 0.13 -0.2 293,944 - IAI47_01360 0.13 -0.0 293,944 - IAI47_01360 0.13 -1.4 293,944 - IAI47_01360 0.13 +2.2 293,952 + IAI47_01360 0.16 -0.1 293,952 + IAI47_01360 0.16 -0.1 293,952 + IAI47_01360 0.16 -0.2 293,984 + IAI47_01360 0.25 +2.5 293,984 + IAI47_01360 0.25 +1.0 293,993 + IAI47_01360 0.28 -0.2 293,997 - IAI47_01360 0.29 +1.2 294,019 + IAI47_01360 0.36 +2.2 294,019 + IAI47_01360 0.36 -0.2 294,019 + IAI47_01360 0.36 +0.1 294,020 - IAI47_01360 0.36 -1.2 294,020 - IAI47_01360 0.36 -1.2 294,020 - IAI47_01360 0.36 +0.3 294,020 - IAI47_01360 0.36 -1.2 294,025 + IAI47_01360 0.38 +0.2 294,025 + IAI47_01360 0.38 -0.3 294,025 + IAI47_01360 0.38 +0.4 294,025 + IAI47_01360 0.38 +0.0 294,025 + IAI47_01360 0.38 -0.0 294,025 + IAI47_01360 0.38 +0.2 294,025 + IAI47_01360 0.38 -1.0 294,025 + IAI47_01360 0.38 +1.5 294,026 - IAI47_01360 0.38 -0.1 294,026 - IAI47_01360 0.38 -1.1 294,026 - IAI47_01360 0.38 -0.4 294,026 - IAI47_01360 0.38 -1.2 294,026 - IAI47_01360 0.38 -0.2 294,026 - IAI47_01360 0.38 -0.5 294,026 - IAI47_01360 0.38 -0.2 294,026 - IAI47_01360 0.38 -0.6 294,026 - IAI47_01360 0.38 +0.2 294,091 + IAI47_01360 0.57 -1.0 294,091 + IAI47_01360 0.57 +0.9 294,091 + IAI47_01360 0.57 +0.7 294,091 + IAI47_01360 0.57 +1.4 294,091 + IAI47_01360 0.57 -0.2 294,091 + IAI47_01360 0.57 -1.0 294,091 + IAI47_01360 0.57 +2.3 294,091 + IAI47_01360 0.57 -0.1 294,091 + IAI47_01360 0.57 -0.2 294,091 + IAI47_01360 0.57 +0.2 294,091 + IAI47_01360 0.57 +0.2 294,091 + IAI47_01360 0.57 -0.2 294,091 + IAI47_01360 0.57 +0.8 294,092 - IAI47_01360 0.57 -0.4 294,092 - IAI47_01360 0.57 +1.2 294,092 - IAI47_01360 0.57 -0.2 294,092 - IAI47_01360 0.57 -0.5 294,092 - IAI47_01360 0.57 -0.4 294,092 - IAI47_01360 0.57 +0.1 294,092 - IAI47_01360 0.57 +0.5 294,092 - IAI47_01360 0.57 +0.8 294,092 - IAI47_01360 0.57 +2.2 294,092 - IAI47_01360 0.57 -0.1 294,092 - IAI47_01360 0.57 -2.4 294,092 - IAI47_01360 0.57 +0.1 294,092 - IAI47_01360 0.57 -0.2 294,092 - IAI47_01360 0.57 +1.3 294,092 - IAI47_01360 0.57 -0.1 294,092 - IAI47_01360 0.57 +1.0 294,092 - IAI47_01360 0.57 -0.8 294,092 - IAI47_01360 0.57 -1.4 294,092 - IAI47_01360 0.57 -0.7 294,092 - IAI47_01360 0.57 +0.4 294,092 - IAI47_01360 0.57 +2.0 294,092 - IAI47_01360 0.57 -0.3 294,092 - IAI47_01360 0.57 +1.0 294,093 + IAI47_01360 0.58 -1.8 294,093 + IAI47_01360 0.58 +2.2 294,093 + IAI47_01360 0.58 +0.4 294,093 + IAI47_01360 0.58 +0.6 294,093 + IAI47_01360 0.58 -0.2 294,093 + IAI47_01360 0.58 +0.8 294,093 + IAI47_01360 0.58 +0.7 294,094 - IAI47_01360 0.58 -0.4 294,094 - IAI47_01360 0.58 +0.5 294,094 - IAI47_01360 0.58 +0.6 294,094 - IAI47_01360 0.58 -0.2 294,094 - IAI47_01360 0.58 +1.0 294,094 - IAI47_01360 0.58 +0.2 294,094 - IAI47_01360 0.58 +2.8 294,135 + IAI47_01360 0.70 -2.2 294,136 - IAI47_01360 0.71 +0.6 294,136 - IAI47_01360 0.71 -0.8 294,202 - +0.2 294,513 + IAI47_01365 0.16 -1.8 294,514 - IAI47_01365 0.16 -2.2 294,578 - IAI47_01365 0.20 -0.8 294,664 + IAI47_01365 0.26 -2.4 294,904 + IAI47_01365 0.42 -2.2 295,108 - IAI47_01365 0.56 -1.8 295,201 + IAI47_01365 0.62 -1.4
Or see this region's nucleotide sequence