Experiment: Ying_Nucleobase14 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20940 and IAI47_20945 are separated by 71 nucleotides IAI47_20945 and IAI47_20950 are separated by 394 nucleotides IAI47_20950 and IAI47_20955 are separated by 364 nucleotides
IAI47_20940: IAI47_20940 - hypothetical protein, at 436,186 to 436,743
_20940
IAI47_20945: IAI47_20945 - hypothetical protein, at 436,815 to 437,156
_20945
IAI47_20950: IAI47_20950 - DUF2628 domain-containing protein, at 437,551 to 437,988
_20950
IAI47_20955: IAI47_20955 - M48 family metallopeptidase, at 438,353 to 440,212
_20955
Position (kb) 437
438 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 436.690 kb on + strand at 436.691 kb on - strand at 436.716 kb on + strand at 436.716 kb on + strand at 436.716 kb on + strand at 436.716 kb on + strand at 436.717 kb on - strand at 436.717 kb on - strand at 436.723 kb on + strand at 436.724 kb on - strand at 436.736 kb on - strand at 436.760 kb on + strand at 436.761 kb on - strand at 436.761 kb on - strand at 436.767 kb on + strand at 436.767 kb on + strand at 436.816 kb on + strand at 436.816 kb on + strand at 436.816 kb on + strand at 436.831 kb on + strand at 436.832 kb on - strand at 436.835 kb on + strand at 436.835 kb on + strand at 436.836 kb on - strand at 436.836 kb on - strand at 436.836 kb on - strand at 436.836 kb on - strand at 437.041 kb on - strand, within IAI47_20945 at 437.041 kb on - strand, within IAI47_20945 at 437.058 kb on - strand, within IAI47_20945 at 437.058 kb on - strand, within IAI47_20945 at 437.058 kb on - strand, within IAI47_20945 at 437.065 kb on + strand, within IAI47_20945 at 437.065 kb on + strand, within IAI47_20945 at 437.065 kb on + strand, within IAI47_20945 at 437.066 kb on - strand, within IAI47_20945 at 437.066 kb on - strand, within IAI47_20945 at 437.066 kb on - strand, within IAI47_20945 at 437.071 kb on + strand, within IAI47_20945 at 437.072 kb on - strand, within IAI47_20945 at 437.090 kb on + strand, within IAI47_20945 at 437.091 kb on - strand, within IAI47_20945 at 437.115 kb on + strand, within IAI47_20945 at 437.116 kb on - strand, within IAI47_20945 at 437.116 kb on - strand, within IAI47_20945 at 437.157 kb on - strand at 437.157 kb on - strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.161 kb on - strand at 437.161 kb on - strand at 437.163 kb on - strand at 437.163 kb on - strand at 437.168 kb on - strand at 437.168 kb on - strand at 437.169 kb on + strand at 437.169 kb on + strand at 437.169 kb on + strand at 437.169 kb on + strand at 437.169 kb on + strand at 437.169 kb on + strand at 437.170 kb on - strand at 437.170 kb on - strand at 437.170 kb on - strand at 437.212 kb on - strand at 437.249 kb on + strand at 437.250 kb on - strand at 437.274 kb on + strand at 437.275 kb on - strand at 437.275 kb on - strand at 437.292 kb on + strand at 437.317 kb on - strand at 437.361 kb on + strand at 437.361 kb on + strand at 437.361 kb on + strand at 437.361 kb on + strand at 437.361 kb on + strand at 437.361 kb on + strand at 437.362 kb on - strand at 437.362 kb on - strand at 437.404 kb on - strand at 437.406 kb on + strand at 437.407 kb on - strand at 437.411 kb on + strand at 437.437 kb on - strand at 437.437 kb on - strand at 437.469 kb on - strand at 437.469 kb on - strand at 437.483 kb on + strand at 437.483 kb on + strand at 437.483 kb on + strand at 437.483 kb on + strand at 437.484 kb on - strand at 437.484 kb on - strand at 437.484 kb on - strand at 437.484 kb on - strand at 437.510 kb on + strand at 437.510 kb on + strand at 437.510 kb on + strand at 437.511 kb on - strand at 437.511 kb on - strand at 437.592 kb on + strand at 437.593 kb on - strand at 437.600 kb on - strand, within IAI47_20950 at 437.642 kb on - strand, within IAI47_20950 at 437.724 kb on - strand, within IAI47_20950 at 437.724 kb on - strand, within IAI47_20950 at 437.749 kb on + strand, within IAI47_20950 at 437.750 kb on - strand, within IAI47_20950 at 437.759 kb on + strand, within IAI47_20950 at 437.799 kb on + strand, within IAI47_20950 at 437.799 kb on + strand, within IAI47_20950 at 437.800 kb on - strand, within IAI47_20950 at 437.812 kb on + strand, within IAI47_20950 at 437.817 kb on + strand, within IAI47_20950 at 437.892 kb on + strand, within IAI47_20950 at 437.893 kb on - strand, within IAI47_20950 at 437.903 kb on - strand, within IAI47_20950 at 437.926 kb on + strand, within IAI47_20950 at 437.927 kb on - strand, within IAI47_20950 at 437.930 kb on - strand, within IAI47_20950 at 437.970 kb on + strand at 437.970 kb on + strand at 438.028 kb on - strand at 438.114 kb on - strand at 438.213 kb on - strand at 438.213 kb on - strand at 438.213 kb on - strand at 438.214 kb on + strand at 438.215 kb on - strand at 438.215 kb on - strand at 438.232 kb on + strand at 438.233 kb on - strand at 438.233 kb on - strand at 438.233 kb on - strand at 438.252 kb on + strand at 438.253 kb on - strand at 438.253 kb on - strand at 438.253 kb on - strand at 438.286 kb on - strand at 438.337 kb on - strand at 438.337 kb on - strand at 438.338 kb on + strand at 438.338 kb on + strand at 438.338 kb on + strand at 438.339 kb on - strand at 438.339 kb on - strand at 438.339 kb on - strand at 438.339 kb on - strand at 438.347 kb on - strand at 438.393 kb on + strand at 438.427 kb on - strand at 438.427 kb on - strand at 438.433 kb on + strand at 438.433 kb on + strand at 438.434 kb on - strand at 438.437 kb on - strand at 438.437 kb on - strand at 438.455 kb on + strand at 438.482 kb on + strand at 438.482 kb on + strand at 438.483 kb on - strand at 438.483 kb on - strand at 438.483 kb on - strand at 438.483 kb on - strand at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.651 kb on - strand, within IAI47_20955 at 438.651 kb on - strand, within IAI47_20955 at 438.651 kb on - strand, within IAI47_20955 at 438.651 kb on - strand, within IAI47_20955 at 438.651 kb on - strand, within IAI47_20955 at 438.661 kb on + strand, within IAI47_20955 at 438.662 kb on - strand, within IAI47_20955 at 438.706 kb on - strand, within IAI47_20955 at 438.714 kb on + strand, within IAI47_20955 at 438.714 kb on + strand, within IAI47_20955 at 438.714 kb on + strand, within IAI47_20955 at 438.715 kb on - strand, within IAI47_20955 at 438.715 kb on - strand, within IAI47_20955 at 438.715 kb on - strand, within IAI47_20955 at 438.715 kb on - strand, within IAI47_20955 at 438.715 kb on - strand, within IAI47_20955 at 438.811 kb on + strand, within IAI47_20955 at 438.811 kb on + strand, within IAI47_20955 at 438.811 kb on + strand, within IAI47_20955 at 438.811 kb on + strand, within IAI47_20955 at 438.875 kb on + strand, within IAI47_20955 at 438.875 kb on + strand, within IAI47_20955 at 438.875 kb on + strand, within IAI47_20955 at 438.875 kb on + strand, within IAI47_20955 at 438.876 kb on - strand, within IAI47_20955 at 438.876 kb on - strand, within IAI47_20955 at 438.876 kb on - strand, within IAI47_20955 at 438.878 kb on + strand, within IAI47_20955 at 438.879 kb on - strand, within IAI47_20955 at 438.926 kb on + strand, within IAI47_20955 at 438.926 kb on + strand, within IAI47_20955 at 438.926 kb on + strand, within IAI47_20955 at 438.926 kb on + strand, within IAI47_20955 at 438.926 kb on + strand, within IAI47_20955 at 438.927 kb on - strand, within IAI47_20955 at 438.927 kb on - strand, within IAI47_20955 at 438.929 kb on + strand, within IAI47_20955 at 438.929 kb on + strand, within IAI47_20955 at 438.929 kb on + strand, within IAI47_20955 at 438.929 kb on + strand, within IAI47_20955 at 438.930 kb on - strand, within IAI47_20955 at 438.930 kb on - strand, within IAI47_20955 at 438.930 kb on - strand, within IAI47_20955 at 438.930 kb on - strand, within IAI47_20955 at 438.937 kb on + strand, within IAI47_20955 at 438.937 kb on + strand, within IAI47_20955 at 438.937 kb on + strand, within IAI47_20955 at 438.938 kb on - strand, within IAI47_20955 at 438.938 kb on - strand, within IAI47_20955 at 438.973 kb on + strand, within IAI47_20955 at 438.973 kb on + strand, within IAI47_20955 at 438.973 kb on + strand, within IAI47_20955 at 438.973 kb on + strand, within IAI47_20955 at 438.974 kb on - strand, within IAI47_20955 at 438.974 kb on - strand, within IAI47_20955
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3 remove 436,690 + +0.0 436,691 - +0.6 436,716 + +0.3 436,716 + +0.3 436,716 + +0.2 436,716 + +0.2 436,717 - +0.7 436,717 - +0.6 436,723 + +1.2 436,724 - +0.5 436,736 - -0.1 436,760 + -0.0 436,761 - +4.1 436,761 - +1.6 436,767 + -0.3 436,767 + +0.4 436,816 + +1.6 436,816 + +0.0 436,816 + +0.4 436,831 + +0.4 436,832 - -0.3 436,835 + +1.8 436,835 + +0.2 436,836 - -1.8 436,836 - -0.8 436,836 - -0.2 436,836 - -0.8 437,041 - IAI47_20945 0.66 -1.5 437,041 - IAI47_20945 0.66 +0.6 437,058 - IAI47_20945 0.71 +0.8 437,058 - IAI47_20945 0.71 -0.6 437,058 - IAI47_20945 0.71 +2.2 437,065 + IAI47_20945 0.73 -0.4 437,065 + IAI47_20945 0.73 +0.1 437,065 + IAI47_20945 0.73 +0.8 437,066 - IAI47_20945 0.73 -0.0 437,066 - IAI47_20945 0.73 +0.3 437,066 - IAI47_20945 0.73 +0.6 437,071 + IAI47_20945 0.75 -2.0 437,072 - IAI47_20945 0.75 -0.2 437,090 + IAI47_20945 0.80 -0.4 437,091 - IAI47_20945 0.81 -0.9 437,115 + IAI47_20945 0.88 -1.2 437,116 - IAI47_20945 0.88 +0.9 437,116 - IAI47_20945 0.88 +1.0 437,157 - +2.5 437,157 - +0.2 437,160 + +1.2 437,160 + +0.2 437,160 + +1.5 437,160 + +1.5 437,160 + -2.0 437,160 + +0.2 437,160 + -0.6 437,161 - +0.3 437,161 - -1.4 437,163 - -0.2 437,163 - +2.5 437,168 - -0.5 437,168 - -0.1 437,169 + +1.5 437,169 + +0.2 437,169 + -1.1 437,169 + +0.0 437,169 + +0.5 437,169 + +0.4 437,170 - -0.8 437,170 - +1.5 437,170 - +1.5 437,212 - +0.9 437,249 + -0.8 437,250 - +0.2 437,274 + +0.6 437,275 - -0.2 437,275 - -0.3 437,292 + -1.8 437,317 - -0.0 437,361 + -2.6 437,361 + -1.1 437,361 + -1.0 437,361 + +0.2 437,361 + -0.1 437,361 + -0.1 437,362 - +0.4 437,362 - -0.2 437,404 - -0.8 437,406 + -0.0 437,407 - -1.8 437,411 + -1.6 437,437 - -0.4 437,437 - +1.4 437,469 - +0.7 437,469 - +1.1 437,483 + -1.7 437,483 + +0.8 437,483 + -0.2 437,483 + +0.6 437,484 - -0.8 437,484 - -0.0 437,484 - -1.0 437,484 - +0.0 437,510 + -0.3 437,510 + -1.0 437,510 + -0.1 437,511 - +0.8 437,511 - +0.5 437,592 + -0.4 437,593 - -1.8 437,600 - IAI47_20950 0.11 -0.2 437,642 - IAI47_20950 0.21 -0.5 437,724 - IAI47_20950 0.39 +0.2 437,724 - IAI47_20950 0.39 -0.8 437,749 + IAI47_20950 0.45 -0.4 437,750 - IAI47_20950 0.45 +2.1 437,759 + IAI47_20950 0.47 +0.4 437,799 + IAI47_20950 0.57 -0.5 437,799 + IAI47_20950 0.57 +1.0 437,800 - IAI47_20950 0.57 +1.0 437,812 + IAI47_20950 0.60 +0.9 437,817 + IAI47_20950 0.61 -1.1 437,892 + IAI47_20950 0.78 -1.5 437,893 - IAI47_20950 0.78 -1.1 437,903 - IAI47_20950 0.80 -1.1 437,926 + IAI47_20950 0.86 -1.1 437,927 - IAI47_20950 0.86 +3.0 437,930 - IAI47_20950 0.87 +0.7 437,970 + +0.6 437,970 + -0.8 438,028 - +0.2 438,114 - -0.2 438,213 - +1.2 438,213 - +0.9 438,213 - +1.0 438,214 + -0.2 438,215 - +0.2 438,215 - +0.1 438,232 + +0.6 438,233 - +0.2 438,233 - +0.5 438,233 - -0.5 438,252 + +0.1 438,253 - -0.6 438,253 - -1.0 438,253 - +1.0 438,286 - +1.4 438,337 - -1.4 438,337 - +0.5 438,338 + +0.2 438,338 + +2.0 438,338 + -0.2 438,339 - +0.2 438,339 - +0.7 438,339 - -0.5 438,339 - +1.0 438,347 - -0.6 438,393 + -1.4 438,427 - -0.2 438,427 - -1.4 438,433 + +1.2 438,433 + +0.9 438,434 - -1.7 438,437 - +1.8 438,437 - -0.6 438,455 + -0.3 438,482 + -0.8 438,482 + -0.2 438,483 - -0.4 438,483 - -0.1 438,483 - -0.2 438,483 - +0.9 438,650 + IAI47_20955 0.16 -0.4 438,650 + IAI47_20955 0.16 -0.0 438,650 + IAI47_20955 0.16 -0.5 438,650 + IAI47_20955 0.16 -1.1 438,650 + IAI47_20955 0.16 +1.7 438,650 + IAI47_20955 0.16 +1.5 438,650 + IAI47_20955 0.16 -1.2 438,651 - IAI47_20955 0.16 -0.4 438,651 - IAI47_20955 0.16 -1.3 438,651 - IAI47_20955 0.16 +0.5 438,651 - IAI47_20955 0.16 -1.0 438,651 - IAI47_20955 0.16 +0.4 438,661 + IAI47_20955 0.17 -0.5 438,662 - IAI47_20955 0.17 -0.2 438,706 - IAI47_20955 0.19 +0.2 438,714 + IAI47_20955 0.19 -0.2 438,714 + IAI47_20955 0.19 -0.2 438,714 + IAI47_20955 0.19 +1.0 438,715 - IAI47_20955 0.19 +2.2 438,715 - IAI47_20955 0.19 +0.9 438,715 - IAI47_20955 0.19 -0.1 438,715 - IAI47_20955 0.19 -1.2 438,715 - IAI47_20955 0.19 -0.4 438,811 + IAI47_20955 0.25 -0.8 438,811 + IAI47_20955 0.25 +0.8 438,811 + IAI47_20955 0.25 -0.3 438,811 + IAI47_20955 0.25 -0.5 438,875 + IAI47_20955 0.28 -0.0 438,875 + IAI47_20955 0.28 +0.2 438,875 + IAI47_20955 0.28 +0.4 438,875 + IAI47_20955 0.28 +1.2 438,876 - IAI47_20955 0.28 -0.5 438,876 - IAI47_20955 0.28 +4.2 438,876 - IAI47_20955 0.28 -0.8 438,878 + IAI47_20955 0.28 +0.4 438,879 - IAI47_20955 0.28 +1.2 438,926 + IAI47_20955 0.31 +0.1 438,926 + IAI47_20955 0.31 +0.4 438,926 + IAI47_20955 0.31 -0.8 438,926 + IAI47_20955 0.31 -0.1 438,926 + IAI47_20955 0.31 +0.8 438,927 - IAI47_20955 0.31 +0.2 438,927 - IAI47_20955 0.31 -1.3 438,929 + IAI47_20955 0.31 -0.7 438,929 + IAI47_20955 0.31 -1.4 438,929 + IAI47_20955 0.31 +0.5 438,929 + IAI47_20955 0.31 -0.6 438,930 - IAI47_20955 0.31 -0.8 438,930 - IAI47_20955 0.31 +0.4 438,930 - IAI47_20955 0.31 -1.0 438,930 - IAI47_20955 0.31 -1.4 438,937 + IAI47_20955 0.31 +0.2 438,937 + IAI47_20955 0.31 +0.8 438,937 + IAI47_20955 0.31 -1.5 438,938 - IAI47_20955 0.31 -0.0 438,938 - IAI47_20955 0.31 +0.3 438,973 + IAI47_20955 0.33 -0.9 438,973 + IAI47_20955 0.33 +0.9 438,973 + IAI47_20955 0.33 -0.1 438,973 + IAI47_20955 0.33 -0.0 438,974 - IAI47_20955 0.33 -1.3 438,974 - IAI47_20955 0.33 +1.2
Or see this region's nucleotide sequence