Experiment: Ying_Nucleobase14 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20685 and IAI47_20690 are separated by 225 nucleotides IAI47_20690 and IAI47_20695 are separated by 9 nucleotides IAI47_20695 and IAI47_20700 are separated by 9 nucleotides IAI47_20700 and IAI47_20705 are separated by 2 nucleotides IAI47_20705 and IAI47_20710 overlap by 17 nucleotides
IAI47_20685: IAI47_20685 - thioredoxin domain-containing protein, at 386,684 to 387,226
_20685
IAI47_20690: IAI47_20690 - ASCH domain-containing protein, at 387,452 to 387,865
_20690
IAI47_20695: IAI47_20695 - HesA/MoeB/ThiF family protein, at 387,875 to 388,843
_20695
IAI47_20700: IAI47_20700 - thiazole synthase, at 388,853 to 389,608
_20700
IAI47_20705: IAI47_20705 - sulfur carrier protein ThiS, at 389,611 to 389,808
_20705
IAI47_20710: IAI47_20710 - FAD-dependent oxidoreductase, at 389,792 to 390,736
_20710
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 386.885 kb on + strand, within IAI47_20685 at 386.886 kb on - strand, within IAI47_20685 at 386.886 kb on - strand, within IAI47_20685 at 386.886 kb on - strand, within IAI47_20685 at 386.886 kb on - strand, within IAI47_20685 at 386.886 kb on - strand, within IAI47_20685 at 386.887 kb on + strand, within IAI47_20685 at 386.887 kb on + strand, within IAI47_20685 at 386.887 kb on + strand, within IAI47_20685 at 386.888 kb on - strand, within IAI47_20685 at 386.888 kb on - strand, within IAI47_20685 at 386.888 kb on - strand, within IAI47_20685 at 386.888 kb on - strand, within IAI47_20685 at 386.912 kb on - strand, within IAI47_20685 at 387.031 kb on + strand, within IAI47_20685 at 387.032 kb on - strand, within IAI47_20685 at 387.038 kb on + strand, within IAI47_20685 at 387.038 kb on + strand, within IAI47_20685 at 387.039 kb on - strand, within IAI47_20685 at 387.039 kb on - strand, within IAI47_20685 at 387.039 kb on - strand, within IAI47_20685 at 387.048 kb on + strand, within IAI47_20685 at 387.048 kb on + strand, within IAI47_20685 at 387.048 kb on + strand, within IAI47_20685 at 387.049 kb on - strand, within IAI47_20685 at 387.049 kb on - strand, within IAI47_20685 at 387.049 kb on - strand, within IAI47_20685 at 387.094 kb on + strand, within IAI47_20685 at 387.095 kb on - strand, within IAI47_20685 at 387.110 kb on + strand, within IAI47_20685 at 387.110 kb on + strand, within IAI47_20685 at 387.110 kb on + strand, within IAI47_20685 at 387.110 kb on + strand, within IAI47_20685 at 387.111 kb on - strand, within IAI47_20685 at 387.111 kb on - strand, within IAI47_20685 at 387.111 kb on - strand, within IAI47_20685 at 387.111 kb on - strand, within IAI47_20685 at 387.111 kb on - strand, within IAI47_20685 at 387.111 kb on - strand, within IAI47_20685 at 387.111 kb on - strand, within IAI47_20685 at 387.111 kb on - strand, within IAI47_20685 at 387.111 kb on - strand, within IAI47_20685 at 387.111 kb on - strand, within IAI47_20685 at 387.111 kb on - strand, within IAI47_20685 at 387.128 kb on - strand, within IAI47_20685 at 387.148 kb on + strand, within IAI47_20685 at 387.148 kb on + strand, within IAI47_20685 at 387.149 kb on - strand, within IAI47_20685 at 387.165 kb on + strand, within IAI47_20685 at 387.166 kb on - strand, within IAI47_20685 at 387.166 kb on - strand, within IAI47_20685 at 387.225 kb on - strand at 387.230 kb on + strand at 387.230 kb on + strand at 387.231 kb on - strand at 387.263 kb on + strand at 387.264 kb on - strand at 387.311 kb on + strand at 387.311 kb on + strand at 387.312 kb on - strand at 387.315 kb on + strand at 387.315 kb on + strand at 387.315 kb on + strand at 387.315 kb on + strand at 387.315 kb on + strand at 387.315 kb on + strand at 387.315 kb on + strand at 387.315 kb on + strand at 387.316 kb on - strand at 387.316 kb on - strand at 387.316 kb on - strand at 387.316 kb on - strand at 387.316 kb on - strand at 387.316 kb on - strand at 387.316 kb on - strand at 387.357 kb on + strand at 387.358 kb on - strand at 387.358 kb on - strand at 387.360 kb on + strand at 387.360 kb on + strand at 387.360 kb on + strand at 387.381 kb on + strand at 387.381 kb on + strand at 387.382 kb on - strand at 387.382 kb on - strand at 387.391 kb on - strand at 387.414 kb on + strand at 387.414 kb on + strand at 387.414 kb on + strand at 387.415 kb on - strand at 387.415 kb on - strand at 387.431 kb on + strand at 387.432 kb on - strand at 387.474 kb on + strand at 387.474 kb on + strand at 387.475 kb on - strand at 387.475 kb on - strand at 387.475 kb on - strand at 387.499 kb on + strand, within IAI47_20690 at 387.500 kb on - strand, within IAI47_20690 at 387.500 kb on - strand, within IAI47_20690 at 387.529 kb on - strand, within IAI47_20690 at 387.575 kb on - strand, within IAI47_20690 at 387.691 kb on - strand, within IAI47_20690 at 387.691 kb on - strand, within IAI47_20690 at 387.765 kb on - strand, within IAI47_20690 at 387.788 kb on + strand, within IAI47_20690 at 387.788 kb on + strand, within IAI47_20690 at 387.788 kb on + strand, within IAI47_20690 at 387.788 kb on + strand, within IAI47_20690 at 387.789 kb on - strand, within IAI47_20690 at 387.806 kb on + strand, within IAI47_20690 at 387.806 kb on + strand, within IAI47_20690 at 387.807 kb on - strand, within IAI47_20690 at 387.863 kb on + strand at 387.877 kb on - strand at 387.877 kb on - strand at 387.884 kb on - strand at 387.884 kb on - strand at 387.884 kb on - strand at 387.884 kb on - strand at 388.010 kb on + strand, within IAI47_20695 at 388.010 kb on + strand, within IAI47_20695 at 388.010 kb on + strand, within IAI47_20695 at 388.010 kb on + strand, within IAI47_20695 at 388.040 kb on - strand, within IAI47_20695 at 388.073 kb on - strand, within IAI47_20695 at 388.073 kb on - strand, within IAI47_20695 at 388.073 kb on - strand, within IAI47_20695 at 388.073 kb on - strand, within IAI47_20695 at 388.073 kb on - strand, within IAI47_20695 at 388.120 kb on + strand, within IAI47_20695 at 388.120 kb on + strand, within IAI47_20695 at 388.239 kb on - strand, within IAI47_20695 at 388.239 kb on - strand, within IAI47_20695 at 388.239 kb on - strand, within IAI47_20695 at 388.241 kb on + strand, within IAI47_20695 at 388.241 kb on + strand, within IAI47_20695 at 388.241 kb on + strand, within IAI47_20695 at 388.241 kb on + strand, within IAI47_20695 at 388.241 kb on + strand, within IAI47_20695 at 388.242 kb on - strand, within IAI47_20695 at 388.242 kb on - strand, within IAI47_20695 at 388.242 kb on - strand, within IAI47_20695 at 388.242 kb on - strand, within IAI47_20695 at 388.242 kb on - strand, within IAI47_20695 at 388.242 kb on - strand, within IAI47_20695 at 388.298 kb on + strand, within IAI47_20695 at 388.298 kb on + strand, within IAI47_20695 at 388.298 kb on + strand, within IAI47_20695 at 388.319 kb on - strand, within IAI47_20695 at 388.389 kb on + strand, within IAI47_20695 at 388.389 kb on + strand, within IAI47_20695 at 388.389 kb on + strand, within IAI47_20695 at 388.389 kb on + strand, within IAI47_20695 at 388.390 kb on - strand, within IAI47_20695 at 388.390 kb on - strand, within IAI47_20695 at 388.390 kb on - strand, within IAI47_20695 at 388.396 kb on + strand, within IAI47_20695 at 388.396 kb on + strand, within IAI47_20695 at 388.397 kb on - strand, within IAI47_20695 at 388.461 kb on + strand, within IAI47_20695 at 388.462 kb on - strand, within IAI47_20695 at 388.462 kb on - strand, within IAI47_20695 at 388.462 kb on - strand, within IAI47_20695 at 388.462 kb on - strand, within IAI47_20695 at 388.462 kb on - strand, within IAI47_20695 at 388.465 kb on + strand, within IAI47_20695 at 388.465 kb on + strand, within IAI47_20695 at 388.465 kb on + strand, within IAI47_20695 at 388.465 kb on + strand, within IAI47_20695 at 388.466 kb on - strand, within IAI47_20695 at 388.466 kb on - strand, within IAI47_20695 at 388.466 kb on - strand, within IAI47_20695 at 388.466 kb on - strand, within IAI47_20695 at 388.466 kb on - strand, within IAI47_20695 at 388.523 kb on + strand, within IAI47_20695 at 388.612 kb on + strand, within IAI47_20695 at 388.687 kb on - strand, within IAI47_20695 at 388.697 kb on - strand, within IAI47_20695 at 388.898 kb on - strand at 388.898 kb on - strand at 388.898 kb on - strand at 388.898 kb on - strand at 389.081 kb on - strand, within IAI47_20700 at 389.098 kb on + strand, within IAI47_20700 at 389.099 kb on - strand, within IAI47_20700 at 389.131 kb on + strand, within IAI47_20700 at 389.233 kb on + strand, within IAI47_20700 at 389.233 kb on + strand, within IAI47_20700 at 389.235 kb on + strand, within IAI47_20700 at 389.236 kb on - strand, within IAI47_20700 at 389.415 kb on + strand, within IAI47_20700 at 389.416 kb on + strand, within IAI47_20700 at 389.416 kb on + strand, within IAI47_20700 at 389.416 kb on + strand, within IAI47_20700 at 389.450 kb on + strand, within IAI47_20700 at 389.450 kb on + strand, within IAI47_20700 at 389.450 kb on + strand, within IAI47_20700 at 389.500 kb on + strand, within IAI47_20700 at 389.500 kb on + strand, within IAI47_20700 at 389.556 kb on + strand at 389.567 kb on - strand at 389.601 kb on + strand at 389.612 kb on + strand at 389.613 kb on - strand at 389.676 kb on - strand, within IAI47_20705 at 389.793 kb on + strand at 389.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3 remove 386,885 + IAI47_20685 0.37 +0.6 386,886 - IAI47_20685 0.37 -1.4 386,886 - IAI47_20685 0.37 -0.3 386,886 - IAI47_20685 0.37 +0.5 386,886 - IAI47_20685 0.37 +0.2 386,886 - IAI47_20685 0.37 -0.1 386,887 + IAI47_20685 0.37 +0.9 386,887 + IAI47_20685 0.37 +1.2 386,887 + IAI47_20685 0.37 -0.3 386,888 - IAI47_20685 0.38 +0.8 386,888 - IAI47_20685 0.38 -0.4 386,888 - IAI47_20685 0.38 -1.4 386,888 - IAI47_20685 0.38 +0.2 386,912 - IAI47_20685 0.42 +0.3 387,031 + IAI47_20685 0.64 -1.4 387,032 - IAI47_20685 0.64 +0.3 387,038 + IAI47_20685 0.65 +0.2 387,038 + IAI47_20685 0.65 -0.6 387,039 - IAI47_20685 0.65 +0.1 387,039 - IAI47_20685 0.65 +0.0 387,039 - IAI47_20685 0.65 -1.4 387,048 + IAI47_20685 0.67 +0.2 387,048 + IAI47_20685 0.67 -2.0 387,048 + IAI47_20685 0.67 -0.1 387,049 - IAI47_20685 0.67 -0.2 387,049 - IAI47_20685 0.67 +1.8 387,049 - IAI47_20685 0.67 +1.2 387,094 + IAI47_20685 0.76 -1.0 387,095 - IAI47_20685 0.76 +0.0 387,110 + IAI47_20685 0.78 -1.5 387,110 + IAI47_20685 0.78 -0.7 387,110 + IAI47_20685 0.78 -0.8 387,110 + IAI47_20685 0.78 -1.0 387,111 - IAI47_20685 0.79 +1.2 387,111 - IAI47_20685 0.79 -0.2 387,111 - IAI47_20685 0.79 -1.1 387,111 - IAI47_20685 0.79 -0.5 387,111 - IAI47_20685 0.79 +0.9 387,111 - IAI47_20685 0.79 -1.8 387,111 - IAI47_20685 0.79 -1.4 387,111 - IAI47_20685 0.79 -0.3 387,111 - IAI47_20685 0.79 +0.9 387,111 - IAI47_20685 0.79 +0.7 387,111 - IAI47_20685 0.79 -0.8 387,128 - IAI47_20685 0.82 +0.2 387,148 + IAI47_20685 0.85 -1.4 387,148 + IAI47_20685 0.85 +0.2 387,149 - IAI47_20685 0.86 +0.5 387,165 + IAI47_20685 0.89 -0.6 387,166 - IAI47_20685 0.89 +0.2 387,166 - IAI47_20685 0.89 -0.6 387,225 - +0.2 387,230 + +1.0 387,230 + -1.8 387,231 - +0.2 387,263 + -0.5 387,264 - -0.5 387,311 + +1.0 387,311 + +0.2 387,312 - +0.1 387,315 + -0.5 387,315 + +1.0 387,315 + +1.0 387,315 + -0.9 387,315 + -1.0 387,315 + -0.2 387,315 + +1.0 387,315 + -0.5 387,316 - +2.2 387,316 - -0.3 387,316 - +1.2 387,316 - +0.2 387,316 - +1.0 387,316 - +1.0 387,316 - -1.1 387,357 + -0.4 387,358 - -2.1 387,358 - +0.5 387,360 + +0.2 387,360 + -0.8 387,360 + -0.3 387,381 + -0.1 387,381 + +1.5 387,382 - +1.2 387,382 - -0.7 387,391 - +0.4 387,414 + -1.0 387,414 + -0.4 387,414 + +0.7 387,415 - +0.0 387,415 - +1.5 387,431 + -1.4 387,432 - +0.6 387,474 + -0.2 387,474 + -1.5 387,475 - -0.1 387,475 - -0.8 387,475 - +1.4 387,499 + IAI47_20690 0.11 +2.1 387,500 - IAI47_20690 0.12 +0.2 387,500 - IAI47_20690 0.12 -0.3 387,529 - IAI47_20690 0.19 +0.3 387,575 - IAI47_20690 0.30 +1.8 387,691 - IAI47_20690 0.58 +0.6 387,691 - IAI47_20690 0.58 -1.7 387,765 - IAI47_20690 0.76 +0.8 387,788 + IAI47_20690 0.81 +0.8 387,788 + IAI47_20690 0.81 +0.2 387,788 + IAI47_20690 0.81 +1.4 387,788 + IAI47_20690 0.81 -1.4 387,789 - IAI47_20690 0.81 -0.1 387,806 + IAI47_20690 0.86 -0.2 387,806 + IAI47_20690 0.86 +0.2 387,807 - IAI47_20690 0.86 +0.7 387,863 + +0.2 387,877 - +1.0 387,877 - +0.2 387,884 - -1.1 387,884 - +0.5 387,884 - -0.5 387,884 - +0.2 388,010 + IAI47_20695 0.14 -1.4 388,010 + IAI47_20695 0.14 -1.4 388,010 + IAI47_20695 0.14 -2.4 388,010 + IAI47_20695 0.14 -2.8 388,040 - IAI47_20695 0.17 +0.2 388,073 - IAI47_20695 0.20 -2.4 388,073 - IAI47_20695 0.20 -2.8 388,073 - IAI47_20695 0.20 -2.4 388,073 - IAI47_20695 0.20 -0.4 388,073 - IAI47_20695 0.20 +0.2 388,120 + IAI47_20695 0.25 +1.2 388,120 + IAI47_20695 0.25 -2.1 388,239 - IAI47_20695 0.38 -1.5 388,239 - IAI47_20695 0.38 -1.0 388,239 - IAI47_20695 0.38 -1.9 388,241 + IAI47_20695 0.38 -1.7 388,241 + IAI47_20695 0.38 -2.8 388,241 + IAI47_20695 0.38 -2.3 388,241 + IAI47_20695 0.38 -1.4 388,241 + IAI47_20695 0.38 -2.4 388,242 - IAI47_20695 0.38 -1.6 388,242 - IAI47_20695 0.38 -0.8 388,242 - IAI47_20695 0.38 -1.8 388,242 - IAI47_20695 0.38 -2.1 388,242 - IAI47_20695 0.38 +0.2 388,242 - IAI47_20695 0.38 -3.1 388,298 + IAI47_20695 0.44 -0.4 388,298 + IAI47_20695 0.44 -2.3 388,298 + IAI47_20695 0.44 -1.8 388,319 - IAI47_20695 0.46 -1.4 388,389 + IAI47_20695 0.53 -2.4 388,389 + IAI47_20695 0.53 -2.1 388,389 + IAI47_20695 0.53 -1.8 388,389 + IAI47_20695 0.53 -2.4 388,390 - IAI47_20695 0.53 -1.6 388,390 - IAI47_20695 0.53 -0.4 388,390 - IAI47_20695 0.53 -0.4 388,396 + IAI47_20695 0.54 -0.6 388,396 + IAI47_20695 0.54 -2.8 388,397 - IAI47_20695 0.54 -2.0 388,461 + IAI47_20695 0.60 -2.1 388,462 - IAI47_20695 0.61 -1.4 388,462 - IAI47_20695 0.61 -2.6 388,462 - IAI47_20695 0.61 -3.0 388,462 - IAI47_20695 0.61 -1.7 388,462 - IAI47_20695 0.61 -3.1 388,465 + IAI47_20695 0.61 -2.4 388,465 + IAI47_20695 0.61 -3.6 388,465 + IAI47_20695 0.61 -3.6 388,465 + IAI47_20695 0.61 -2.3 388,466 - IAI47_20695 0.61 -1.8 388,466 - IAI47_20695 0.61 -1.8 388,466 - IAI47_20695 0.61 -2.8 388,466 - IAI47_20695 0.61 +0.2 388,466 - IAI47_20695 0.61 -1.2 388,523 + IAI47_20695 0.67 -1.4 388,612 + IAI47_20695 0.76 -1.6 388,687 - IAI47_20695 0.84 -0.8 388,697 - IAI47_20695 0.85 -1.8 388,898 - -2.2 388,898 - -0.8 388,898 - -2.1 388,898 - -2.0 389,081 - IAI47_20700 0.30 -1.4 389,098 + IAI47_20700 0.32 -1.0 389,099 - IAI47_20700 0.33 -1.9 389,131 + IAI47_20700 0.37 -3.1 389,233 + IAI47_20700 0.50 -2.1 389,233 + IAI47_20700 0.50 -2.8 389,235 + IAI47_20700 0.51 -1.8 389,236 - IAI47_20700 0.51 -2.7 389,415 + IAI47_20700 0.74 -2.7 389,416 + IAI47_20700 0.74 -1.4 389,416 + IAI47_20700 0.74 -1.1 389,416 + IAI47_20700 0.74 -1.9 389,450 + IAI47_20700 0.79 -0.1 389,450 + IAI47_20700 0.79 -2.1 389,450 + IAI47_20700 0.79 -1.8 389,500 + IAI47_20700 0.86 +0.2 389,500 + IAI47_20700 0.86 -1.0 389,556 + -1.8 389,567 - -0.8 389,601 + -0.8 389,612 + -0.8 389,613 - -2.3 389,676 - IAI47_20705 0.33 -2.3 389,793 + -1.8 389,794 - -1.9
Or see this region's nucleotide sequence