Strain Fitness in Pantoea sp. MT58 around IAI47_18405

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
3,916,671	+		IAI47_18395	0.87	-0.4
3,916,671	+		IAI47_18395	0.87	-0.6
3,916,688	+		IAI47_18395	0.90	+0.4
3,916,688	+				-1.3
3,916,688	+		IAI47_18395	0.90	-0.1
3,916,689	-		IAI47_18395	0.90	-1.4
3,916,692	+				-0.9
3,916,692	+				+0.2
3,916,692	+				+0.9
3,916,692	+				+0.4
3,916,693	-				+0.5
3,916,693	-				+0.3
3,916,693	-				+1.1
3,916,697	+				-1.1
3,916,697	+				+0.1
3,916,698	-				-0.0
3,916,725	+				+1.4
3,916,725	+				-1.0
3,916,726	-				-0.0
3,916,726	-				+1.0
3,916,726	-				-0.0
3,916,726	-				+1.4
3,916,732	+				-0.1
3,916,732	+				+1.2
3,916,733	-				-0.1
3,916,733	-				+1.1
3,916,733	-				-0.0
3,916,752	-				-2.2
3,916,752	-				+0.8
3,916,838	-				-1.2
3,916,872	+		IAI47_18400	0.13	-1.2
3,917,002	-		IAI47_18400	0.27	-0.6
3,917,002	-		IAI47_18400	0.27	-0.6
3,917,234	-		IAI47_18400	0.53	-1.6
3,917,234	-		IAI47_18400	0.53	-0.2
3,917,234	-		IAI47_18400	0.53	-1.6
3,917,345	+		IAI47_18400	0.65	-1.6
3,917,346	-		IAI47_18400	0.65	-2.4
3,917,358	+		IAI47_18400	0.66	+0.4
3,917,575	+				-1.6
3,917,658	-				-0.6
3,917,658	-				-1.6
3,917,746	-		IAI47_18405	0.12	+0.4
3,917,870	-		IAI47_18405	0.30	-0.5
3,917,870	-		IAI47_18405	0.30	-0.1
3,917,870	-		IAI47_18405	0.30	-2.6
3,917,870	-		IAI47_18405	0.30	-2.8
3,917,870	-		IAI47_18405	0.30	-0.0
3,917,884	-		IAI47_18405	0.32	-0.2
3,917,912	-		IAI47_18405	0.36	+0.3
3,917,983	+		IAI47_18405	0.46	-1.9
3,917,984	-		IAI47_18405	0.46	-2.5
3,917,984	-		IAI47_18405	0.46	-1.6
3,917,984	-		IAI47_18405	0.46	-0.2
3,917,984	-		IAI47_18405	0.46	-1.9
3,917,989	+		IAI47_18405	0.47	+0.4
3,917,989	+		IAI47_18405	0.47	-0.6
3,917,990	-		IAI47_18405	0.47	+0.4
3,918,056	-		IAI47_18405	0.56	-1.4
3,918,056	-		IAI47_18405	0.56	-0.1
3,918,056	-		IAI47_18405	0.56	-0.6
3,918,056	-		IAI47_18405	0.56	+0.8
3,918,125	-		IAI47_18405	0.66	-0.2
3,918,301	-				-2.1
3,918,301	-				-0.7
3,918,301	-				-0.6
3,918,301	-				-0.4
3,918,356	-				-1.0
3,918,365	-				+1.4
3,918,365	-				-1.5
3,918,365	-				+0.1
3,918,365	-				-1.2
3,918,373	-				-0.6
3,918,373	-				-0.6
3,918,384	-				-0.0
3,918,409	-				-0.6
3,918,409	-				-1.2
3,918,409	-				-2.4
3,918,409	-				+0.4
3,918,411	-				-3.4
3,918,411	-				-1.2
3,918,411	-				-2.8
3,918,442	-				-0.6
3,918,442	-				-0.6
3,918,442	-				-0.0
3,918,442	-				-1.9
3,918,442	-				-1.9
3,918,442	-				-1.8
3,918,442	-				-2.8
3,918,478	-		IAI47_18410	0.14	-0.6
3,918,478	-		IAI47_18410	0.14	-1.2
3,918,478	-		IAI47_18410	0.14	-1.9
3,918,567	-		IAI47_18410	0.25	-0.6
3,918,606	+		IAI47_18410	0.30	-1.6
3,918,607	-		IAI47_18410	0.30	-1.6
3,918,607	-		IAI47_18410	0.30	-1.8
3,918,718	-		IAI47_18410	0.43	-0.8
3,918,770	+		IAI47_18410	0.50	-2.4
3,918,771	-		IAI47_18410	0.50	-1.0
3,918,771	-		IAI47_18410	0.50	-0.6
3,918,771	-		IAI47_18410	0.50	-0.7
3,918,892	-		IAI47_18410	0.64	-1.2
3,918,892	-		IAI47_18410	0.64	-2.8
3,919,146	+				-0.6
3,919,147	-				-2.4
3,919,147	-				-1.2
3,919,147	-				-1.9
3,919,216	-				+0.4
3,919,216	-				+0.2
3,919,216	-				+0.6
3,919,226	+				-1.2
3,919,227	-				-1.6
3,919,227	-				-0.4
3,919,227	-				-0.6
3,919,227	-				+0.4
3,919,336	-		IAI47_18415	0.61	-0.1
3,919,336	-		IAI47_18415	0.61	+0.1