Strain Fitness in Pantoea sp. MT58 around IAI47_18090

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
3,847,131	-		IAI47_18085	0.49	-1.1
3,847,174	+		IAI47_18085	0.51	+0.0
3,847,174	+		IAI47_18085	0.51	-0.2
3,847,174	+		IAI47_18085	0.51	-0.3
3,847,174	+		IAI47_18085	0.51	-2.6
3,847,175	-		IAI47_18085	0.51	-0.6
3,847,175	-		IAI47_18085	0.51	-3.9
3,847,199	+		IAI47_18085	0.52	+0.4
3,847,199	+		IAI47_18085	0.52	-0.0
3,847,200	-		IAI47_18085	0.52	-1.2
3,847,207	+		IAI47_18085	0.53	-0.3
3,847,207	+		IAI47_18085	0.53	-0.7
3,847,207	+		IAI47_18085	0.53	-1.9
3,847,207	+		IAI47_18085	0.53	-1.5
3,847,207	+		IAI47_18085	0.53	+0.4
3,847,207	+		IAI47_18085	0.53	+0.4
3,847,208	-		IAI47_18085	0.53	+0.1
3,847,208	-		IAI47_18085	0.53	-1.6
3,847,208	-		IAI47_18085	0.53	+1.0
3,847,208	-		IAI47_18085	0.53	-1.9
3,847,208	-		IAI47_18085	0.53	-1.8
3,847,307	-		IAI47_18085	0.58	-0.6
3,847,307	-		IAI47_18085	0.58	-0.4
3,847,346	-		IAI47_18085	0.60	-0.6
3,847,431	+		IAI47_18085	0.64	-1.2
3,847,432	-		IAI47_18085	0.64	-0.2
3,847,452	+		IAI47_18085	0.66	-0.2
3,847,465	+		IAI47_18085	0.66	-0.2
3,847,465	+		IAI47_18085	0.66	-0.1
3,847,465	+		IAI47_18085	0.66	-0.6
3,847,465	+		IAI47_18085	0.66	+0.2
3,847,465	+		IAI47_18085	0.66	+2.0
3,847,465	+		IAI47_18085	0.66	-1.2
3,847,465	+		IAI47_18085	0.66	-2.4
3,847,465	+		IAI47_18085	0.66	+0.7
3,847,466	-		IAI47_18085	0.66	-1.1
3,847,466	-		IAI47_18085	0.66	-0.2
3,847,466	-		IAI47_18085	0.66	-0.7
3,847,466	-		IAI47_18085	0.66	-1.0
3,847,466	-		IAI47_18085	0.66	-2.2
3,847,466	-		IAI47_18085	0.66	+0.7
3,847,512	+		IAI47_18085	0.69	-0.3
3,847,512	+		IAI47_18085	0.69	-0.8
3,847,512	+		IAI47_18085	0.69	+1.4
3,847,513	-		IAI47_18085	0.69	+0.4
3,847,513	-		IAI47_18085	0.69	-0.9
3,847,513	-		IAI47_18085	0.69	-2.4
3,847,513	-		IAI47_18085	0.69	+0.4
3,847,513	-		IAI47_18085	0.69	-0.5
3,847,513	-		IAI47_18085	0.69	-0.1
3,847,513	-		IAI47_18085	0.69	+3.0
3,847,513	-		IAI47_18085	0.69	-0.0
3,847,513	-		IAI47_18085	0.69	-1.9
3,847,567	+		IAI47_18085	0.72	+0.2
3,847,567	+		IAI47_18085	0.72	-0.3
3,847,567	+		IAI47_18085	0.72	+1.8
3,847,567	+		IAI47_18085	0.72	-0.9
3,847,568	-		IAI47_18085	0.72	-2.3
3,847,606	+		IAI47_18085	0.74	+0.2
3,847,672	+		IAI47_18085	0.77	-0.9
3,847,672	+		IAI47_18085	0.77	+0.5
3,847,672	+		IAI47_18085	0.77	+0.4
3,847,672	+		IAI47_18085	0.77	-0.3
3,847,672	+		IAI47_18085	0.77	+2.0
3,847,672	+		IAI47_18085	0.77	+0.4
3,847,672	+		IAI47_18085	0.77	-0.4
3,847,672	+		IAI47_18085	0.77	+2.1
3,847,672	+		IAI47_18085	0.77	+0.2
3,847,673	-		IAI47_18085	0.77	-1.0
3,847,673	-		IAI47_18085	0.77	-1.4
3,847,673	-		IAI47_18085	0.77	-0.8
3,847,673	-		IAI47_18085	0.77	-0.9
3,847,673	-		IAI47_18085	0.77	+0.4
3,847,673	-		IAI47_18085	0.77	+0.4
3,847,673	-		IAI47_18085	0.77	-2.8
3,847,673	-		IAI47_18085	0.77	-0.9
3,847,683	+		IAI47_18085	0.78	+0.4
3,847,683	+		IAI47_18085	0.78	+1.4
3,847,683	+		IAI47_18085	0.78	+0.1
3,847,683	+		IAI47_18085	0.78	-0.7
3,847,683	+		IAI47_18085	0.78	+1.0
3,847,683	+		IAI47_18085	0.78	+0.8
3,847,684	-		IAI47_18085	0.78	-1.5
3,847,684	-		IAI47_18085	0.78	+0.4
3,847,684	-		IAI47_18085	0.78	+1.0
3,847,684	-		IAI47_18085	0.78	-1.8
3,847,684	-		IAI47_18085	0.78	-1.1
3,847,684	-		IAI47_18085	0.78	-0.2
3,847,738	+		IAI47_18085	0.81	-1.3
3,847,739	-		IAI47_18085	0.81	-0.2
3,847,739	-		IAI47_18085	0.81	+0.7
3,847,801	-		IAI47_18085	0.84	+0.4
3,847,881	+		IAI47_18085	0.88	-0.6
3,847,881	+		IAI47_18085	0.88	+2.4
3,847,881	+		IAI47_18085	0.88	+0.9
3,847,881	+		IAI47_18085	0.88	+0.4
3,847,881	+		IAI47_18085	0.88	-0.5
3,847,881	+		IAI47_18085	0.88	+0.6
3,847,881	+		IAI47_18085	0.88	+2.0
3,847,881	+		IAI47_18085	0.88	-0.4
3,847,881	+		IAI47_18085	0.88	-0.6
3,847,881	+		IAI47_18085	0.88	-0.9
3,847,881	+		IAI47_18085	0.88	-1.1
3,847,882	-		IAI47_18085	0.88	+0.2
3,847,882	-		IAI47_18085	0.88	-1.2
3,847,882	-		IAI47_18085	0.88	+1.0
3,847,882	-		IAI47_18085	0.88	-0.6
3,847,882	-		IAI47_18085	0.88	+0.4
3,847,882	-		IAI47_18085	0.88	+0.4
3,847,948	-				-0.2
3,847,948	-				-0.6
3,848,077	+				+1.6
3,848,077	+				+0.4
3,848,077	+				+2.4
3,848,077	+				+0.4
3,848,077	+				-1.0
3,848,078	-				-0.7
3,848,078	-				-1.0
3,848,078	-				-1.2
3,848,097	+				+0.5
3,848,098	-				+0.4
3,848,107	+				-1.4
3,848,107	+				-2.1
3,848,107	+				-1.2
3,848,151	+				-2.5
3,848,152	-				-2.6
3,848,205	-		IAI47_18090	0.15	-1.2
3,848,205	-		IAI47_18090	0.15	-0.9
3,848,205	-		IAI47_18090	0.15	-1.9
3,848,225	+		IAI47_18090	0.18	-2.2
3,848,225	+		IAI47_18090	0.18	-1.2
3,848,226	-		IAI47_18090	0.18	-2.8
3,848,226	-		IAI47_18090	0.18	-1.6
3,848,226	-		IAI47_18090	0.18	-2.6
3,848,226	-		IAI47_18090	0.18	-0.2
3,848,289	+		IAI47_18090	0.28	-1.2
3,848,289	+		IAI47_18090	0.28	-2.1
3,848,289	+		IAI47_18090	0.28	-3.2
3,848,289	+		IAI47_18090	0.28	-2.9
3,848,290	-		IAI47_18090	0.28	-3.1
3,848,306	+		IAI47_18090	0.31	-2.6
3,848,306	+		IAI47_18090	0.31	-1.9
3,848,316	+		IAI47_18090	0.33	-3.1
3,848,316	+		IAI47_18090	0.33	-1.9
3,848,316	+		IAI47_18090	0.33	-2.9
3,848,333	+		IAI47_18090	0.35	-0.6
3,848,333	+		IAI47_18090	0.35	-1.1
3,848,334	-		IAI47_18090	0.35	-2.3
3,848,334	-		IAI47_18090	0.35	-2.6
3,848,334	-		IAI47_18090	0.35	-2.8
3,848,346	+		IAI47_18090	0.37	-2.3
3,848,346	+		IAI47_18090	0.37	-1.6
3,848,347	-		IAI47_18090	0.37	-1.8
3,848,347	-		IAI47_18090	0.37	-0.6
3,848,347	-		IAI47_18090	0.37	-2.4
3,848,347	-		IAI47_18090	0.37	+0.4
3,848,353	+		IAI47_18090	0.38	-1.9
3,848,353	+		IAI47_18090	0.38	-1.2
3,848,353	+		IAI47_18090	0.38	-1.6
3,848,353	+		IAI47_18090	0.38	-1.2
3,848,353	+		IAI47_18090	0.38	-2.9
3,848,353	+		IAI47_18090	0.38	-2.6
3,848,353	+		IAI47_18090	0.38	-1.6
3,848,353	+		IAI47_18090	0.38	-1.6
3,848,353	+		IAI47_18090	0.38	-1.9
3,848,353	+		IAI47_18090	0.38	-2.2
3,848,353	+		IAI47_18090	0.38	-1.3
3,848,354	-		IAI47_18090	0.39	-1.8
3,848,354	-		IAI47_18090	0.39	-3.2
3,848,354	-		IAI47_18090	0.39	-0.9
3,848,354	-		IAI47_18090	0.39	-1.8
3,848,354	-		IAI47_18090	0.39	-2.1
3,848,354	-		IAI47_18090	0.39	-2.8
3,848,354	-		IAI47_18090	0.39	-0.2
3,848,354	-		IAI47_18090	0.39	-2.4
3,848,354	-		IAI47_18090	0.39	-2.2
3,848,354	-		IAI47_18090	0.39	+1.0
3,848,354	-		IAI47_18090	0.39	-2.6
3,848,372	+		IAI47_18090	0.41	-1.2
3,848,478	+		IAI47_18090	0.58	-1.9
3,848,478	+		IAI47_18090	0.58	-4.2
3,848,478	+		IAI47_18090	0.58	-0.9
3,848,478	+		IAI47_18090	0.58	-4.0
3,848,478	+		IAI47_18090	0.58	-2.2
3,848,478	+		IAI47_18090	0.58	-1.7
3,848,479	-		IAI47_18090	0.59	-3.3
3,848,479	-		IAI47_18090	0.59	-2.2
3,848,479	-		IAI47_18090	0.59	-0.6
3,848,479	-		IAI47_18090	0.59	-1.6
3,848,495	+		IAI47_18090	0.61	-2.5
3,848,495	+		IAI47_18090	0.61	-2.1
3,848,513	+		IAI47_18090	0.64	-2.8
3,848,513	+		IAI47_18090	0.64	-2.8
3,848,513	+		IAI47_18090	0.64	-0.6
3,848,579	+		IAI47_18090	0.74	+0.4
3,848,579	+		IAI47_18090	0.74	-1.9
3,848,579	+		IAI47_18090	0.74	-1.2
3,848,580	-		IAI47_18090	0.75	-1.2
3,848,580	-		IAI47_18090	0.75	-0.4
3,848,580	-		IAI47_18090	0.75	-2.7
3,848,603	+		IAI47_18090	0.78	-3.3
3,848,629	+		IAI47_18090	0.82	-2.6
3,848,629	+		IAI47_18090	0.82	-3.5
3,848,636	+		IAI47_18090	0.84	-1.9
3,848,637	-		IAI47_18090	0.84	-2.2
3,848,651	+		IAI47_18090	0.86	-1.2
3,848,651	+		IAI47_18090	0.86	-3.7
3,848,651	+		IAI47_18090	0.86	-1.4
3,848,651	+		IAI47_18090	0.86	-0.6
3,848,652	-		IAI47_18090	0.86	-2.4
3,848,652	-		IAI47_18090	0.86	-3.3
3,848,652	-		IAI47_18090	0.86	-2.6
3,848,652	-		IAI47_18090	0.86	+1.4
3,848,672	+		IAI47_18090	0.89	-1.6
3,848,672	+		IAI47_18090	0.89	-0.6
3,848,737	-				+0.4
3,848,762	+				+1.1
3,848,762	+				+0.6
3,848,762	+				+0.1
3,848,763	-				-0.7
3,848,763	-				+0.4
3,848,763	-				+0.8
3,848,780	+				-0.8
3,848,780	+				+0.1
3,848,780	+				+0.8
3,848,781	-				-0.2
3,848,781	-				-1.1
3,848,781	-				+0.4
3,848,781	-				+0.2
3,848,781	-				+0.7
3,848,781	-				+0.9
3,848,781	-				+0.2
3,848,781	-				-0.2
3,848,781	-				+0.7
3,848,781	-				-0.6
3,848,855	-				+0.8
3,848,880	+				+1.4
3,848,881	-				+0.2
3,848,881	-				+0.6
3,848,933	+				+0.7
3,848,933	+				+0.7
3,848,934	-				+1.0
3,848,934	-				+1.0
3,848,935	+				+0.2
3,848,935	+				+0.3
3,848,935	+				+0.8
3,848,935	+				-0.6
3,848,935	+				+0.6
3,848,935	+				+0.6
3,848,935	+				+0.4
3,848,936	-				-1.2
3,848,936	-				+1.9
3,848,936	-				+1.2
3,848,936	-				+1.6
3,848,982	+				-0.3
3,848,983	-				+0.2
3,848,983	-				+0.4
3,848,983	-				+2.0
3,849,037	+				+0.8
3,849,038	-				+0.0
3,849,051	-				-0.5
3,849,051	-				-0.6
3,849,051	-				+1.6
3,849,051	-				+0.5
3,849,074	+				-0.3
3,849,074	+				-0.4
3,849,075	-				-1.1
3,849,230	+		IAI47_18095	0.20	+0.2
3,849,231	-		IAI47_18095	0.21	+0.2
3,849,231	-		IAI47_18095	0.21	+1.4
3,849,250	-		IAI47_18095	0.22	+0.4
3,849,250	-		IAI47_18095	0.22	+0.4
3,849,250	-		IAI47_18095	0.22	-1.1
3,849,260	+		IAI47_18095	0.23	+1.1
3,849,260	+		IAI47_18095	0.23	+0.2
3,849,260	+		IAI47_18095	0.23	+1.5
3,849,260	+		IAI47_18095	0.23	+0.7
3,849,260	+		IAI47_18095	0.23	-0.2
3,849,261	-		IAI47_18095	0.23	-0.1
3,849,264	+		IAI47_18095	0.23	-0.3
3,849,264	+		IAI47_18095	0.23	+0.6
3,849,264	+		IAI47_18095	0.23	-0.9
3,849,265	-		IAI47_18095	0.23	+1.0
3,849,265	-		IAI47_18095	0.23	+1.2
3,849,265	-		IAI47_18095	0.23	-0.7
3,849,265	-		IAI47_18095	0.23	-0.8
3,849,272	+		IAI47_18095	0.23	-0.0
3,849,272	+		IAI47_18095	0.23	-0.3
3,849,273	-		IAI47_18095	0.23	+0.7
3,849,273	-		IAI47_18095	0.23	-0.3
3,849,273	-		IAI47_18095	0.23	+0.9
3,849,273	-		IAI47_18095	0.23	-0.4
3,849,273	-		IAI47_18095	0.23	+0.2
3,849,293	-		IAI47_18095	0.25	-0.5
3,849,293	-		IAI47_18095	0.25	+0.2
3,849,306	-		IAI47_18095	0.26	+0.4
3,849,371	+		IAI47_18095	0.30	+0.9
3,849,372	+		IAI47_18095	0.30	+1.1
3,849,373	-		IAI47_18095	0.30	+0.4
3,849,374	+		IAI47_18095	0.30	+0.6
3,849,374	+		IAI47_18095	0.30	-0.6
3,849,374	+		IAI47_18095	0.30	-0.3
3,849,374	+		IAI47_18095	0.30	+2.2
3,849,374	+		IAI47_18095	0.30	+1.0
3,849,374	+		IAI47_18095	0.30	+0.1
3,849,375	-		IAI47_18095	0.30	-0.3
3,849,375	-		IAI47_18095	0.30	-0.1
3,849,375	-		IAI47_18095	0.30	-0.0
3,849,375	-		IAI47_18095	0.30	+0.4
3,849,375	-		IAI47_18095	0.30	-0.6
3,849,375	-		IAI47_18095	0.30	+3.0
3,849,375	-		IAI47_18095	0.30	+0.6
3,849,375	-		IAI47_18095	0.30	+1.0
3,849,375	-		IAI47_18095	0.30	+1.4
3,849,375	-		IAI47_18095	0.30	-0.4
3,849,375	-		IAI47_18095	0.30	-0.3
3,849,430	+		IAI47_18095	0.34	+2.0
3,849,430	+		IAI47_18095	0.34	-1.2
3,849,430	+		IAI47_18095	0.34	+0.7
3,849,430	+		IAI47_18095	0.34	-1.6
3,849,431	-		IAI47_18095	0.34	+0.1
3,849,431	-		IAI47_18095	0.34	+0.5
3,849,431	-		IAI47_18095	0.34	+0.4
3,849,431	-		IAI47_18095	0.34	+0.2
3,849,450	+		IAI47_18095	0.36	+1.2
3,849,498	+		IAI47_18095	0.39	-1.6
3,849,499	-		IAI47_18095	0.39	-0.2
3,849,499	-		IAI47_18095	0.39	+0.4
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