Strain Fitness in Pantoea sp. MT58 around IAI47_17460

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
3,700,164	+		IAI47_17455	0.43	+1.0
3,700,164	+		IAI47_17455	0.43	+0.1
3,700,260	+		IAI47_17455	0.49	+0.8
3,700,260	+		IAI47_17455	0.49	-2.8
3,700,260	+		IAI47_17455	0.49	-0.6
3,700,378	+		IAI47_17455	0.56	-0.0
3,700,378	+		IAI47_17455	0.56	-0.9
3,700,426	-		IAI47_17455	0.58	-0.2
3,700,426	-		IAI47_17455	0.58	-0.3
3,700,576	+		IAI47_17455	0.67	-0.2
3,700,663	-		IAI47_17455	0.72	-1.8
3,700,746	+		IAI47_17455	0.77	-0.0
3,700,746	+		IAI47_17455	0.77	-0.6
3,700,746	+		IAI47_17455	0.77	-0.3
3,700,746	+		IAI47_17455	0.77	-2.1
3,700,746	+		IAI47_17455	0.77	-1.1
3,700,747	-		IAI47_17455	0.77	+1.4
3,700,792	+		IAI47_17455	0.80	+0.5
3,700,792	+		IAI47_17455	0.80	+0.1
3,700,793	-		IAI47_17455	0.80	-0.9
3,701,025	+				+1.4
3,701,182	+				-1.4
3,701,182	+				-0.1
3,701,183	-				-0.1
3,701,218	-		IAI47_17460	0.12	+0.4
3,701,218	-		IAI47_17460	0.12	-1.3
3,701,218	-		IAI47_17460	0.12	+0.9
3,701,218	-		IAI47_17460	0.12	-0.1
3,701,231	+		IAI47_17460	0.14	-0.0
3,701,231	+		IAI47_17460	0.14	-1.0
3,701,232	-		IAI47_17460	0.14	-0.4
3,701,536	+		IAI47_17460	0.58	+0.1
3,701,537	-		IAI47_17460	0.59	-1.0
3,701,537	-		IAI47_17460	0.59	-0.0
3,701,615	+		IAI47_17460	0.70	-0.6
3,701,615	+		IAI47_17460	0.70	-0.6
3,701,615	+		IAI47_17460	0.70	-0.5
3,701,615	+		IAI47_17460	0.70	-0.9
3,701,615	+		IAI47_17460	0.70	-0.0
3,701,616	-		IAI47_17460	0.70	-0.6
3,701,690	-		IAI47_17460	0.81	-1.2
3,701,744	+		IAI47_17460	0.89	-0.7
3,701,745	-		IAI47_17460	0.89	-0.4
3,701,762	+				-0.0
3,701,762	+				-0.0
3,701,762	+				+0.9
3,701,763	-				-0.5
3,701,783	+				+0.1
3,701,784	-				-1.2
3,701,810	+				+0.4
3,701,811	-				+0.7
3,701,816	+				-0.7
3,701,816	+				+1.4
3,701,816	+				+0.8
3,701,816	+				-0.5
3,701,817	-				+0.6
3,701,817	-				+0.7
3,701,817	-				-0.3
3,701,817	-				-0.5
3,701,817	-				+0.2
3,701,817	-				-1.0
3,701,877	+				-0.2
3,701,878	-				+0.2
3,701,878	-				+0.4
3,701,944	-				+0.1
3,702,003	-		IAI47_17465	0.14	-0.0
3,702,028	+		IAI47_17465	0.16	-0.3
3,702,028	+		IAI47_17465	0.16	+0.2
3,702,029	-		IAI47_17465	0.16	+1.4
3,702,029	-		IAI47_17465	0.16	-0.1
3,702,120	+		IAI47_17465	0.22	-0.6
3,702,120	+		IAI47_17465	0.22	+1.6
3,702,120	+		IAI47_17465	0.22	+3.0
3,702,120	+		IAI47_17465	0.22	-0.8
3,702,120	+		IAI47_17465	0.22	-1.2
3,702,120	+		IAI47_17465	0.22	-1.2
3,702,121	-		IAI47_17465	0.23	+1.0
3,702,121	-		IAI47_17465	0.23	+0.1
3,702,121	-		IAI47_17465	0.23	+0.1
3,702,121	-		IAI47_17465	0.23	-1.2
3,702,121	-		IAI47_17465	0.23	-0.6
3,702,121	-		IAI47_17465	0.23	-0.4
3,702,121	-		IAI47_17465	0.23	+0.4
3,702,121	-		IAI47_17465	0.23	-2.9
3,702,121	-		IAI47_17465	0.23	-0.2
3,702,121	-		IAI47_17465	0.23	+0.0
3,702,123	+		IAI47_17465	0.23	-0.2
3,702,123	+		IAI47_17465	0.23	-0.0
3,702,124	-		IAI47_17465	0.23	+0.2
3,702,124	-		IAI47_17465	0.23	-0.2
3,702,124	-		IAI47_17465	0.23	-1.1
3,702,124	-		IAI47_17465	0.23	+0.1
3,702,124	-		IAI47_17465	0.23	-1.2
3,702,124	-		IAI47_17465	0.23	+0.3
3,702,202	+		IAI47_17465	0.29	+1.1
3,702,274	+		IAI47_17465	0.34	+0.2
3,702,274	+		IAI47_17465	0.34	-2.1
3,702,274	+		IAI47_17465	0.34	-1.9
3,702,275	-		IAI47_17465	0.34	+0.6
3,702,369	+		IAI47_17465	0.41	-0.3
3,702,496	+		IAI47_17465	0.50	+0.2
3,702,496	+		IAI47_17465	0.50	-0.3
3,702,496	+		IAI47_17465	0.50	-1.2
3,702,497	-		IAI47_17465	0.51	+1.7
3,702,511	+		IAI47_17465	0.52	-0.3
3,702,511	+		IAI47_17465	0.52	+0.7
3,702,511	+		IAI47_17465	0.52	+0.4
3,702,511	+		IAI47_17465	0.52	-0.6
3,702,511	+		IAI47_17465	0.52	-0.3
3,702,512	-		IAI47_17465	0.52	+0.1
3,702,512	-		IAI47_17465	0.52	-0.6
3,702,512	-		IAI47_17465	0.52	-1.8
3,702,678	+		IAI47_17465	0.64	-0.4
3,702,679	-		IAI47_17465	0.64	-0.6
3,702,758	+		IAI47_17465	0.70	+0.2
3,702,758	+		IAI47_17465	0.70	-1.0
3,702,758	+		IAI47_17465	0.70	-0.6
3,702,759	-		IAI47_17465	0.70	+0.6
3,702,759	-		IAI47_17465	0.70	+0.4
3,702,760	+		IAI47_17465	0.70	+1.0
3,702,760	+		IAI47_17465	0.70	-1.6
3,702,760	+		IAI47_17465	0.70	+0.6
3,702,760	+		IAI47_17465	0.70	-1.3
3,702,761	-		IAI47_17465	0.70	-0.6
3,702,761	-		IAI47_17465	0.70	-1.3
3,702,789	+		IAI47_17465	0.72	-0.3