Strain Fitness in Pantoea sp. MT58 around IAI47_16120

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
3,411,419	+		IAI47_16115	0.70	-2.4
3,411,419	+		IAI47_16115	0.70	+0.4
3,411,420	-		IAI47_16115	0.70	-3.4
3,411,420	-		IAI47_16115	0.70	-2.6
3,411,420	-		IAI47_16115	0.70	-3.2
3,411,420	-		IAI47_16115	0.70	-3.3
3,411,584	+		IAI47_16115	0.75	-2.4
3,411,598	+		IAI47_16115	0.76	-2.4
3,411,598	+		IAI47_16115	0.76	-2.2
3,411,599	-		IAI47_16115	0.76	-2.4
3,411,733	+		IAI47_16115	0.80	-2.2
3,411,733	+				-1.2
3,411,733	+		IAI47_16115	0.80	-4.2
3,411,733	+		IAI47_16115	0.80	-3.8
3,411,733	+		IAI47_16115	0.80	-4.4
3,411,733	+		IAI47_16115	0.80	-3.6
3,411,733	+		IAI47_16115	0.80	-0.6
3,411,734	-		IAI47_16115	0.80	-1.2
3,411,734	-		IAI47_16115	0.80	-3.3
3,411,734	-		IAI47_16115	0.80	-2.4
3,411,734	-		IAI47_16115	0.80	-2.9
3,411,833	-		IAI47_16115	0.83	-3.2
3,411,833	-		IAI47_16115	0.83	-3.8
3,411,864	-		IAI47_16115	0.84	-2.4
3,411,879	-		IAI47_16115	0.84	-2.6
3,411,926	+		IAI47_16115	0.86	-2.9
3,411,926	+		IAI47_16115	0.86	-3.9
3,411,926	+		IAI47_16115	0.86	-2.2
3,411,927	-		IAI47_16115	0.86	-3.4
3,412,122	+				-2.9
3,412,123	-				-1.2
3,412,187	-				-3.9
3,412,187	-				-3.2
3,412,187	-				-2.2
3,412,187	-				-5.8
3,412,187	-				-3.9
3,412,278	-				-2.2
3,412,297	+				-4.1
3,412,297	+				-2.4
3,412,297	+				-3.2
3,412,298	-				-4.1
3,412,359	+				-2.2
3,412,360	-				-2.2
3,412,367	+				-1.6
3,412,368	-				-3.2
3,412,384	+				-2.9
3,412,384	+				-3.9
3,412,385	-				-1.2
3,412,385	-				-2.2
3,412,385	-				-2.6
3,412,385	-				-3.8
3,412,396	-				+0.1
3,412,432	+				-3.7
3,412,432	+				-2.2
3,412,636	+		IAI47_16120	0.21	-4.3
3,412,663	+		IAI47_16120	0.23	-2.8
3,412,664	-		IAI47_16120	0.23	-2.6
3,412,699	+		IAI47_16120	0.27	-2.6
3,412,741	+		IAI47_16120	0.30	-2.8
3,412,742	-		IAI47_16120	0.30	-3.1
3,412,742	-		IAI47_16120	0.30	-0.6
3,412,756	+		IAI47_16120	0.32	-0.6
3,412,756	+		IAI47_16120	0.32	-0.6
3,412,756	+		IAI47_16120	0.32	-4.3
3,412,756	+		IAI47_16120	0.32	-4.5
3,412,756	+		IAI47_16120	0.32	-3.9
3,412,757	-		IAI47_16120	0.32	-3.6
3,412,757	-		IAI47_16120	0.32	-1.9
3,412,757	-		IAI47_16120	0.32	-1.2
3,412,757	-		IAI47_16120	0.32	-2.9
3,412,757	-		IAI47_16120	0.32	-2.6
3,412,795	-		IAI47_16120	0.35	-2.6
3,412,921	+		IAI47_16120	0.46	+0.4
3,412,921	+		IAI47_16120	0.46	-3.1
3,412,921	+		IAI47_16120	0.46	-3.4
3,412,922	-		IAI47_16120	0.46	-2.8
3,412,922	-		IAI47_16120	0.46	+0.4
3,412,922	-		IAI47_16120	0.46	-1.9
3,412,922	-		IAI47_16120	0.46	-4.9
3,412,948	-		IAI47_16120	0.48	-2.6
3,412,948	-		IAI47_16120	0.48	-1.2
3,412,953	+		IAI47_16120	0.49	-2.2
3,412,954	-		IAI47_16120	0.49	-0.6
3,412,954	-		IAI47_16120	0.49	-3.7
3,412,954	-		IAI47_16120	0.49	-3.5
3,412,968	+		IAI47_16120	0.50	-4.1
3,412,968	+		IAI47_16120	0.50	-2.6
3,413,040	+		IAI47_16120	0.56	-3.5
3,413,041	-		IAI47_16120	0.56	-1.2
3,413,041	-		IAI47_16120	0.56	-3.3
3,413,147	-		IAI47_16120	0.66	-1.2
3,413,147	-		IAI47_16120	0.66	-3.2
3,413,241	+		IAI47_16120	0.74	-3.2
3,413,242	-		IAI47_16120	0.74	-4.4
3,413,300	-		IAI47_16120	0.79	-3.4
3,413,360	-		IAI47_16120	0.84	-3.1
3,413,373	+		IAI47_16120	0.85	-1.9
3,413,373	+		IAI47_16120	0.85	-2.6
3,413,373	+		IAI47_16120	0.85	-1.2
3,413,373	+		IAI47_16120	0.85	-3.5
3,413,373	+		IAI47_16120	0.85	-2.2
3,413,373	+		IAI47_16120	0.85	-1.9
3,413,373	+		IAI47_16120	0.85	-4.7
3,413,374	-		IAI47_16120	0.85	-2.8
3,413,374	-		IAI47_16120	0.85	-3.4
3,413,374	-		IAI47_16120	0.85	-2.4
3,413,383	+		IAI47_16120	0.86	-2.6
3,413,400	+		IAI47_16120	0.88	-3.9
3,413,400	+		IAI47_16120	0.88	-2.4
3,413,400	+		IAI47_16120	0.88	-3.3
3,413,401	-		IAI47_16120	0.88	-1.6
3,413,401	-		IAI47_16120	0.88	-2.2
3,413,402	-		IAI47_16120	0.88	-1.2
3,413,571	-				-0.6
3,413,572	+				-0.6
3,413,572	+				-0.6
3,413,593	+				-3.4
3,413,656	+				-2.2
3,413,656	+				+0.5
3,413,656	+				+0.0
3,413,657	-				+1.1
3,413,657	-				-0.4
3,413,657	-				-1.2
3,413,707	-				-0.1
3,413,715	+				-0.4
3,413,715	+				+0.2
3,413,716	-				-0.8
3,413,733	+				+0.4
3,413,733	+				+1.0
3,413,733	+				+0.6
3,413,733	+				-1.6
3,413,768	+				+0.3
3,413,768	+				-0.0
3,413,768	+				+1.3
3,413,789	-				+0.4
3,413,818	-				+0.1