Strain Fitness in Pantoea sp. MT58 around IAI47_15810

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
3,335,316	-				-1.9
3,335,320	+				-1.6
3,335,321	-				-1.2
3,335,321	-				+0.4
3,335,331	-				+0.2
3,335,550	-				-0.6
3,335,631	-		IAI47_15810	0.11	+0.4
3,335,899	-		IAI47_15810	0.21	+0.4
3,335,930	+		IAI47_15810	0.23	-0.6
3,335,962	-		IAI47_15810	0.24	-1.6
3,336,018	-		IAI47_15810	0.26	-0.6
3,336,096	+		IAI47_15810	0.29	-0.6
3,336,237	-		IAI47_15810	0.34	-1.2
3,336,322	-		IAI47_15810	0.37	-0.6
3,336,327	-		IAI47_15810	0.37	-0.6
3,336,641	+		IAI47_15810	0.49	-0.6
3,336,734	+		IAI47_15810	0.53	+0.4
3,336,810	-		IAI47_15810	0.56	-1.6
3,336,823	-		IAI47_15810	0.56	-0.6
3,337,276	-		IAI47_15810	0.73	-0.6
3,337,317	-		IAI47_15810	0.75	-1.9
3,337,414	+		IAI47_15810	0.78	-1.9
3,337,892	+				-0.6
3,337,893	-				-1.9
3,337,982	-				+0.4
3,338,009	-				-1.9
3,338,009	-				-0.5
3,338,021	+				-1.6
3,338,022	-				+0.4
3,338,022	-				-0.6
3,338,031	-				+1.0
3,338,074	-				+0.4
3,338,074	-				-0.2
3,338,080	-				-0.2
3,338,106	-				+0.5
3,338,106	-				-0.9
3,338,106	-				-0.4
3,338,106	-				+0.7
3,338,106	-				+0.1
3,338,106	-				-1.0
3,338,106	-				-0.6
3,338,106	-				+0.1
3,338,116	-				+0.5
3,338,179	-		IAI47_15815	0.11	-0.8
3,338,179	-		IAI47_15815	0.11	+0.1
3,338,179	-		IAI47_15815	0.11	-0.3
3,338,297	-		IAI47_15815	0.26	+0.3
3,338,297	-		IAI47_15815	0.26	+1.6
3,338,336	+		IAI47_15815	0.31	+0.4
3,338,337	-		IAI47_15815	0.31	-1.9
3,338,337	-		IAI47_15815	0.31	-1.1
3,338,353	-		IAI47_15815	0.33	-0.6
3,338,353	-		IAI47_15815	0.33	-1.6
3,338,362	-		IAI47_15815	0.35	-0.9
3,338,375	+		IAI47_15815	0.36	-3.2
3,338,434	-		IAI47_15815	0.44	+0.4
3,338,522	-		IAI47_15815	0.56	-1.4
3,338,522	-		IAI47_15815	0.56	-0.7
3,338,524	+		IAI47_15815	0.56	-1.9
3,338,525	-		IAI47_15815	0.56	-0.3
3,338,525	-		IAI47_15815	0.56	-1.2
3,338,542	-		IAI47_15815	0.58	+0.4
3,338,617	-		IAI47_15815	0.68	-0.9
3,338,674	-		IAI47_15815	0.75	+1.2
3,338,674	-		IAI47_15815	0.75	+2.7
3,338,689	-		IAI47_15815	0.77	+0.4
3,338,793	-				-0.2
3,338,835	-				+1.0
3,338,835	-				+0.2
3,338,835	-				+0.6
3,338,835	-				+0.1
3,338,835	-				-0.4
3,338,835	-				-0.3
3,338,835	-				+0.4
3,338,835	-				+0.4
3,338,835	-				+0.4
3,338,835	-				-0.8
3,338,835	-				-0.3
3,338,835	-				+0.7
3,338,835	-				-0.3
3,338,835	-				-0.1
3,338,835	-				-0.6
3,338,835	-				+1.4
3,338,835	-				-1.8
3,338,835	-				-0.3
3,338,835	-				+1.2
3,338,850	-				+1.1
3,338,850	-				+0.0
3,338,850	-				+0.7
3,338,855	-				-0.4
3,338,855	-				-2.2
3,338,855	-				+1.1
3,338,855	-				+0.4
3,338,855	-				-1.4
3,338,872	+				-1.2
3,338,872	+				-2.2
3,338,873	-				-1.6
3,338,873	-				+0.4
3,338,873	-				-0.8
3,338,873	-				+0.4
3,338,875	+				-1.6
3,338,875	+				+1.4
3,338,876	-				+2.7
3,338,876	-				+0.4
3,338,876	-				-0.1
3,338,876	-				+1.4
3,338,876	-				-1.4
3,338,932	+				-1.6
3,338,933	-				+0.4
3,338,933	-				-0.8
3,338,933	-				-0.8
3,338,941	-				-1.8
3,338,941	-				+0.4
3,338,955	+				+1.2
3,338,955	+				+0.5
3,338,955	+				-0.8
3,338,955	+				+0.4
3,338,955	+				-0.6
3,338,955	+				+1.1
3,338,955	+				+1.6
3,338,955	+				-0.0
3,338,955	+				+0.4
3,338,955	+				+0.4
3,338,956	-				-0.5
3,338,956	-				-0.8
3,338,956	-				+0.1
3,338,956	-				+1.4
3,338,956	-				+2.8
3,338,956	-				-0.1
3,338,956	-				+0.4
3,338,957	+				-1.1
3,338,957	+				+0.4
3,338,957	+				+0.1
3,338,958	-				-0.4
3,338,958	-				+1.4
3,338,958	-				+2.7
3,338,958	-				+1.6
3,338,985	+				+0.4