Strain Fitness in Pantoea sp. MT58 around IAI47_13755

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
2,912,525	-				-2.9
2,912,529	-				-2.2
2,912,604	-				-0.6
2,912,675	-				-0.8
2,912,675	-				-0.2
2,912,675	-				-1.0
2,912,720	-				+0.8
2,912,720	-				+1.4
2,912,729	-				-0.2
2,912,729	-				-0.0
2,912,729	-				-0.9
2,912,742	-				-0.1
2,912,789	+				-1.6
2,912,790	-				+0.4
2,912,790	-				+1.6
2,912,790	-				-0.1
2,912,790	-				+0.8
2,912,794	+				+1.4
2,912,795	-				-0.5
2,912,795	-				+0.4
2,912,795	-				-0.6
2,912,795	-				+1.6
2,913,063	-		IAI47_13750	0.38	-2.9
2,913,063	-		IAI47_13750	0.38	+0.4
2,913,070	+		IAI47_13750	0.39	-3.2
2,913,070	+		IAI47_13750	0.39	-2.2
2,913,070	+		IAI47_13750	0.39	-1.9
2,913,071	-		IAI47_13750	0.39	+0.4
2,913,071	-		IAI47_13750	0.39	-1.2
2,913,071	-		IAI47_13750	0.39	-1.6
2,913,071	-		IAI47_13750	0.39	-0.6
2,913,071	-		IAI47_13750	0.39	-1.2
2,913,071	-		IAI47_13750	0.39	-1.2
2,913,170	-		IAI47_13750	0.53	-1.2
2,913,179	-		IAI47_13750	0.54	+0.4
2,913,281	+		IAI47_13750	0.68	-2.2
2,913,282	-		IAI47_13750	0.68	-1.9
2,913,285	-		IAI47_13750	0.69	+0.4
2,913,442	+				+0.4
2,913,443	-				-1.6
2,913,443	-				-2.2
2,913,443	-				-1.2
2,913,443	-				-1.2
2,913,482	-				-1.6
2,913,526	-				-0.4
2,913,528	+				-1.6
2,913,532	+				-1.2
2,913,533	-				-2.8
2,913,615	+				-1.6
2,913,616	-				-3.2
2,913,697	-				-3.1
2,913,760	+		IAI47_13755	0.13	-1.2
2,913,770	-		IAI47_13755	0.14	-1.6
2,913,873	-		IAI47_13755	0.20	-0.6
2,913,938	-		IAI47_13755	0.23	-2.4
2,913,938	-		IAI47_13755	0.23	-0.6
2,913,940	+		IAI47_13755	0.24	-1.2
2,913,941	-		IAI47_13755	0.24	-2.8
2,913,941	-		IAI47_13755	0.24	-1.9
2,913,941	-		IAI47_13755	0.24	-2.2
2,914,021	+		IAI47_13755	0.28	-1.6
2,914,022	-		IAI47_13755	0.28	+0.4
2,914,084	+		IAI47_13755	0.32	-2.6
2,914,116	-		IAI47_13755	0.34	+0.4
2,914,116	-		IAI47_13755	0.34	-3.4
2,914,227	+		IAI47_13755	0.40	-0.2
2,914,227	+		IAI47_13755	0.40	+0.4
2,914,228	-		IAI47_13755	0.40	+0.4
2,914,228	-		IAI47_13755	0.40	-2.8
2,914,643	-		IAI47_13755	0.63	-1.2
2,914,666	-		IAI47_13755	0.65	-1.2
2,914,670	-		IAI47_13755	0.65	-3.1
2,914,670	-		IAI47_13755	0.65	-1.2
2,914,670	-		IAI47_13755	0.65	-1.9
2,914,717	-		IAI47_13755	0.68	-1.2
2,914,797	+		IAI47_13755	0.72	-1.9
2,914,798	-		IAI47_13755	0.72	-1.2
2,914,798	-		IAI47_13755	0.72	-1.2
2,914,842	+		IAI47_13755	0.75	-1.2
2,914,871	-		IAI47_13755	0.76	+0.4
2,914,892	-		IAI47_13755	0.77	-1.6
2,915,029	+		IAI47_13755	0.85	-1.9
2,915,029	+		IAI47_13755	0.85	+1.1
2,915,029	+		IAI47_13755	0.85	-1.2
2,915,030	-		IAI47_13755	0.85	-0.6
2,915,030	-		IAI47_13755	0.85	-3.2
2,915,030	-		IAI47_13755	0.85	-0.6
2,915,030	-		IAI47_13755	0.85	-2.2
2,915,030	-		IAI47_13755	0.85	-2.2
2,915,030	-		IAI47_13755	0.85	+0.4
2,915,030	-		IAI47_13755	0.85	-2.9
2,915,030	-		IAI47_13755	0.85	-3.5
2,915,031	+		IAI47_13755	0.85	+0.4
2,915,031	+		IAI47_13755	0.85	-0.6
2,915,032	-		IAI47_13755	0.85	-3.9
2,915,032	-		IAI47_13755	0.85	-0.6
2,915,032	-		IAI47_13755	0.85	-0.6
2,915,059	-		IAI47_13755	0.87	-0.6
2,915,059	-		IAI47_13755	0.87	-0.6
2,915,083	-		IAI47_13755	0.88	-0.6
2,915,083	-		IAI47_13755	0.88	-2.8
2,915,083	-		IAI47_13755	0.88	-2.2
2,915,083	-		IAI47_13755	0.88	-2.6
2,915,083	-		IAI47_13755	0.88	-2.6
2,915,086	+		IAI47_13755	0.88	-2.4
2,915,087	-		IAI47_13755	0.88	-3.5
2,915,087	-		IAI47_13755	0.88	-1.9
2,915,087	-		IAI47_13755	0.88	-4.1
2,915,087	-		IAI47_13755	0.88	-1.2
2,915,102	-		IAI47_13755	0.89	-1.9
2,915,114	-				-2.2
2,915,114	-				-0.6
2,915,117	-				-1.2
2,915,132	-				-1.9
2,915,151	-				-0.6
2,915,151	-				-2.2
2,915,320	-				-0.6
2,915,328	+		IAI47_13760	0.11	-1.9
2,915,391	+		IAI47_13760	0.29	-2.9
2,915,392	-		IAI47_13760	0.29	-1.2
2,915,392	-		IAI47_13760	0.29	-0.6
2,915,505	+		IAI47_13760	0.61	-0.6
2,915,505	+		IAI47_13760	0.61	-2.2
2,915,505	+		IAI47_13760	0.61	-0.6
2,915,506	-		IAI47_13760	0.62	-0.6
2,915,545	-		IAI47_13760	0.73	-1.6
2,915,554	-		IAI47_13760	0.76	-1.2
2,915,554	-		IAI47_13760	0.76	-1.9
2,915,554	-		IAI47_13760	0.76	-0.6
2,915,561	-		IAI47_13760	0.78	-2.2
2,915,634	-				-1.6
2,915,634	-				-0.6
2,915,639	-				-2.2
2,915,748	+		IAI47_13765	0.30	-0.6
2,915,749	-		IAI47_13765	0.30	-2.2
2,915,749	-		IAI47_13765	0.30	-1.6
2,915,749	-		IAI47_13765	0.30	+0.4
2,915,902	-		IAI47_13765	0.69	-1.9
2,915,902	-		IAI47_13765	0.69	-1.9
2,915,918	-		IAI47_13765	0.73	-1.2
2,915,918	-		IAI47_13765	0.73	-1.6
2,915,948	-		IAI47_13765	0.81	-2.4
2,916,120	+				-1.9
2,916,121	-				+0.4
2,916,121	-				-0.6
2,916,186	+				-0.2
2,916,188	+				-2.2
2,916,189	-				-1.2
2,916,233	+				-1.2
2,916,233	+				+1.0
2,916,235	+				+0.4
2,916,244	+				+1.7
2,916,244	+				-1.0
2,916,244	+				+1.1
2,916,244	+				-1.2
2,916,245	-				-0.4
2,916,258	+				+0.7
2,916,280	+				-0.6