Strain Fitness in Pantoea sp. MT58 around IAI47_13310

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
2,814,779	+		IAI47_13300	0.55	+0.1
2,814,780	-		IAI47_13300	0.55	+0.1
2,814,780	-		IAI47_13300	0.55	+0.2
2,814,828	+		IAI47_13300	0.64	-0.4
2,814,829	-		IAI47_13300	0.64	+1.4
2,814,829	-		IAI47_13300	0.64	-0.9
2,814,908	+		IAI47_13300	0.80	+0.0
2,814,908	+		IAI47_13300	0.80	-1.8
2,814,908	+		IAI47_13300	0.80	+2.0
2,814,909	-		IAI47_13300	0.80	-0.6
2,814,945	+		IAI47_13300	0.87	-0.3
2,814,946	-		IAI47_13300	0.87	-0.6
2,814,999	+				+1.4
2,814,999	+				+0.8
2,814,999	+				+0.4
2,814,999	+				+0.1
2,814,999	+				+1.4
2,815,000	-				-0.4
2,815,000	-				-0.2
2,815,003	+				+1.0
2,815,003	+				-0.0
2,815,003	+				-0.2
2,815,003	+				+0.5
2,815,003	+				-0.4
2,815,003	+				-1.1
2,815,004	-				+0.2
2,815,004	-				+1.4
2,815,004	-				+0.4
2,815,004	-				+0.5
2,815,031	+				+1.2
2,815,032	-				-0.0
2,815,032	-				+0.2
2,815,032	-				-0.3
2,815,032	-				+0.7
2,815,032	-				-0.8
2,815,032	-				+0.4
2,815,032	-				+0.1
2,815,035	+				+0.2
2,815,035	+				-0.3
2,815,095	-		IAI47_13305	0.15	+0.4
2,815,095	-		IAI47_13305	0.15	-1.4
2,815,168	+		IAI47_13305	0.28	-0.5
2,815,168	+		IAI47_13305	0.28	+0.6
2,815,168	+		IAI47_13305	0.28	-0.4
2,815,168	+		IAI47_13305	0.28	-0.4
2,815,169	-		IAI47_13305	0.28	-0.5
2,815,169	-		IAI47_13305	0.28	-0.6
2,815,169	-		IAI47_13305	0.28	-0.4
2,815,275	-		IAI47_13305	0.47	-0.0
2,815,275	-		IAI47_13305	0.47	-0.3
2,815,275	-		IAI47_13305	0.47	+0.4
2,815,275	-		IAI47_13305	0.47	+0.9
2,815,275	-		IAI47_13305	0.47	-0.4
2,815,276	+		IAI47_13305	0.47	-0.0
2,815,276	+		IAI47_13305	0.47	-0.0
2,815,276	+		IAI47_13305	0.47	+0.1
2,815,276	+		IAI47_13305	0.47	+1.4
2,815,276	+		IAI47_13305	0.47	-0.8
2,815,276	+		IAI47_13305	0.47	+1.0
2,815,276	+		IAI47_13305	0.47	+0.7
2,815,276	+		IAI47_13305	0.47	+0.4
2,815,277	-		IAI47_13305	0.47	-0.5
2,815,277	-		IAI47_13305	0.47	+0.1
2,815,277	-		IAI47_13305	0.47	-0.3
2,815,277	-		IAI47_13305	0.47	+0.7
2,815,277	-		IAI47_13305	0.47	+0.1
2,815,277	-		IAI47_13305	0.47	-1.4
2,815,277	-		IAI47_13305	0.47	+1.4
2,815,277	-		IAI47_13305	0.47	+1.1
2,815,277	-		IAI47_13305	0.47	-0.7
2,815,277	-		IAI47_13305	0.47	+0.5
2,815,277	-		IAI47_13305	0.47	-0.2
2,815,277	-		IAI47_13305	0.47	+0.7
2,815,277	-		IAI47_13305	0.47	-0.8
2,815,277	-		IAI47_13305	0.47	-2.3
2,815,288	+		IAI47_13305	0.49	-0.2
2,815,289	-		IAI47_13305	0.49	-0.1
2,815,386	-		IAI47_13305	0.67	-1.1
2,815,411	+		IAI47_13305	0.71	+0.1
2,815,427	-		IAI47_13305	0.74	-1.4
2,815,523	+				-0.5
2,815,523	+				+0.4
2,815,524	-				-0.5
2,815,524	-				-0.6
2,815,524	-				-1.0
2,815,524	-				-0.6
2,815,524	-				-2.2
2,815,559	-				+1.8
2,815,631	+				+0.0
2,815,645	+				+1.4
2,815,646	-				+0.4
2,815,659	+				+0.6
2,815,660	-				+2.7
2,815,664	+				-0.2
2,815,672	-				-1.6
2,815,689	+				-0.0
2,815,690	-				+0.6
2,815,693	+				+0.6
2,815,693	+				+0.2
2,815,694	-				-1.2
2,815,694	-				-2.2
2,815,694	-				-1.2
2,815,694	-				-1.2
2,815,729	+				-2.6
2,815,729	+				-0.4
2,815,729	+				-1.9
2,815,729	+				-1.2
2,815,729	+				+1.4
2,815,729	+				+0.4
2,815,730	-				-0.6
2,815,731	+				-1.9
2,815,731	+				-0.6
2,815,731	+				-2.4
2,815,731	+				-0.2
2,815,731	+				-1.2
2,815,731	+				-1.2
2,815,732	-				-1.6
2,815,732	-				-2.8
2,815,732	-				-1.8
2,815,732	-				-0.6
2,815,737	-				-0.9
2,815,775	+				-1.2
2,815,807	+		IAI47_13310	0.12	+0.2
2,815,807	+		IAI47_13310	0.12	-2.6
2,815,808	-		IAI47_13310	0.12	-1.2
2,815,868	+		IAI47_13310	0.20	-2.4
2,815,869	-		IAI47_13310	0.20	-1.9
2,815,918	+		IAI47_13310	0.27	-1.6
2,815,993	+		IAI47_13310	0.37	-1.7
2,815,993	+		IAI47_13310	0.37	-0.6
2,815,993	+		IAI47_13310	0.37	-0.2
2,815,994	-		IAI47_13310	0.37	-1.2
2,815,996	+		IAI47_13310	0.37	-0.9
2,815,996	+		IAI47_13310	0.37	+0.4
2,815,996	+		IAI47_13310	0.37	-0.9
2,815,996	+		IAI47_13310	0.37	-2.8
2,815,996	+		IAI47_13310	0.37	-1.4
2,815,996	+		IAI47_13310	0.37	-1.2
2,816,068	+		IAI47_13310	0.47	-0.8
2,816,068	+		IAI47_13310	0.47	-0.9
2,816,092	+		IAI47_13310	0.50	-0.9
2,816,092	+		IAI47_13310	0.50	+1.0
2,816,121	-		IAI47_13310	0.54	+0.4
2,816,166	+		IAI47_13310	0.60	-1.6
2,816,166	+		IAI47_13310	0.60	-1.9
2,816,252	+		IAI47_13310	0.72	-1.2
2,816,354	+		IAI47_13310	0.86	-1.2
2,816,354	+		IAI47_13310	0.86	+1.4
2,816,354	+		IAI47_13310	0.86	+1.0
2,816,355	-		IAI47_13310	0.86	-2.9
2,816,362	+		IAI47_13310	0.87	-2.2
2,816,362	+		IAI47_13310	0.87	-0.8
2,816,367	-		IAI47_13310	0.88	+1.4
2,816,427	+				-0.4
2,816,440	+				-0.4
2,816,504	+				+2.0
2,816,505	-				+1.2
2,816,505	-				+1.4
2,816,505	-				+1.0
2,816,507	+				-0.9
2,816,508	-				+2.0
2,816,508	-				+1.4
2,816,524	+				+2.2
2,816,524	+				+1.7
2,816,525	-				-0.8
2,816,583	+				-0.4
2,816,584	-				+1.1
2,816,586	+				-0.6
2,816,587	-				-0.6
2,816,626	+				+0.0
2,816,626	+				-0.9
2,816,627	-				-0.0
2,816,711	+		IAI47_13315	0.11	-2.4
2,816,712	-		IAI47_13315	0.11	-1.2
2,816,730	+		IAI47_13315	0.13	+0.4
2,816,730	+		IAI47_13315	0.13	+0.6
2,816,731	-		IAI47_13315	0.13	+2.0
2,816,731	-		IAI47_13315	0.13	+0.1
2,816,738	-		IAI47_13315	0.14	+1.1
2,816,741	-		IAI47_13315	0.15	-0.1
2,816,751	-		IAI47_13315	0.16	-1.6
2,816,758	+		IAI47_13315	0.17	+1.0
2,816,841	-		IAI47_13315	0.28	-0.0
2,816,912	+		IAI47_13315	0.38	-0.4
2,816,913	-		IAI47_13315	0.38	+0.8
2,816,913	-		IAI47_13315	0.38	-1.0
2,816,913	-		IAI47_13315	0.38	+0.6
2,816,946	-		IAI47_13315	0.43	+2.0
2,816,950	+		IAI47_13315	0.43	-0.7
2,816,950	+		IAI47_13315	0.43	+0.0
2,816,951	-		IAI47_13315	0.43	+1.5
2,816,988	-		IAI47_13315	0.48	-0.0
2,816,988	-		IAI47_13315	0.48	+2.4
2,816,994	+		IAI47_13315	0.49	-0.0
2,817,077	-		IAI47_13315	0.61	-0.6
2,817,097	+		IAI47_13315	0.63	-0.2
2,817,097	+		IAI47_13315	0.63	-1.2
2,817,097	+		IAI47_13315	0.63	+3.6
2,817,098	-		IAI47_13315	0.64	+0.3
2,817,098	-		IAI47_13315	0.64	-0.0
2,817,098	-		IAI47_13315	0.64	-0.7
2,817,098	-		IAI47_13315	0.64	-1.9
2,817,098	-		IAI47_13315	0.64	-0.3
2,817,104	+		IAI47_13315	0.64	-0.8
2,817,104	+		IAI47_13315	0.64	+0.7
2,817,243	+		IAI47_13315	0.83	-0.4
2,817,243	+		IAI47_13315	0.83	+0.1
2,817,243	+		IAI47_13315	0.83	+1.0
2,817,244	-		IAI47_13315	0.83	-0.9
2,817,244	-		IAI47_13315	0.83	+0.0
2,817,244	-		IAI47_13315	0.83	-0.2
2,817,302	+				+0.7
2,817,321	+				+1.5
2,817,321	+				+0.2
2,817,322	-				+0.4
2,817,322	-				+0.6
2,817,322	-				-1.4
2,817,330	-				+0.4
2,817,367	+				+0.1
2,817,367	+				+0.7
2,817,367	+				+0.4
2,817,368	-				-0.9