Strain Fitness in Pantoea sp. MT58 around IAI47_12765

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
2,688,190	-		IAI47_12760	0.32	-0.7
2,688,197	+		IAI47_12760	0.32	-0.7
2,688,198	-		IAI47_12760	0.32	-0.2
2,688,198	-		IAI47_12760	0.32	-0.7
2,688,201	+		IAI47_12760	0.33	-1.1
2,688,201	+		IAI47_12760	0.33	-0.1
2,688,201	+		IAI47_12760	0.33	-0.5
2,688,201	+		IAI47_12760	0.33	+0.5
2,688,201	+		IAI47_12760	0.33	-0.2
2,688,201	+		IAI47_12760	0.33	+0.0
2,688,201	+		IAI47_12760	0.33	+0.3
2,688,201	+		IAI47_12760	0.33	+1.3
2,688,202	-		IAI47_12760	0.33	+0.3
2,688,202	-		IAI47_12760	0.33	+0.3
2,688,202	-		IAI47_12760	0.33	+0.3
2,688,202	-		IAI47_12760	0.33	-1.2
2,688,213	+		IAI47_12760	0.34	-1.4
2,688,214	-		IAI47_12760	0.34	-0.1
2,688,267	+		IAI47_12760	0.39	+0.5
2,688,276	-		IAI47_12760	0.39	-0.9
2,688,293	+		IAI47_12760	0.41	+1.9
2,688,293	+		IAI47_12760	0.41	-0.7
2,688,294	-		IAI47_12760	0.41	+0.5
2,688,312	+		IAI47_12760	0.43	+2.7
2,688,312	+		IAI47_12760	0.43	+1.5
2,688,340	+		IAI47_12760	0.45	-0.7
2,688,341	-		IAI47_12760	0.45	-0.8
2,688,375	-		IAI47_12760	0.48	-0.2
2,688,375	-		IAI47_12760	0.48	-0.7
2,688,435	+		IAI47_12760	0.53	+0.9
2,688,435	+		IAI47_12760	0.53	+0.2
2,688,435	+		IAI47_12760	0.53	+0.2
2,688,435	+		IAI47_12760	0.53	-1.8
2,688,435	+		IAI47_12760	0.53	-0.7
2,688,435	+		IAI47_12760	0.53	+0.3
2,688,435	+		IAI47_12760	0.53	+0.3
2,688,435	+		IAI47_12760	0.53	+0.0
2,688,435	+		IAI47_12760	0.53	+0.3
2,688,435	+		IAI47_12760	0.53	-0.7
2,688,436	-		IAI47_12760	0.54	-0.7
2,688,436	-		IAI47_12760	0.54	-1.2
2,688,436	-		IAI47_12760	0.54	-1.2
2,688,436	-		IAI47_12760	0.54	-0.7
2,688,436	-		IAI47_12760	0.54	+1.3
2,688,436	-		IAI47_12760	0.54	-1.0
2,688,436	-		IAI47_12760	0.54	+0.7
2,688,436	-		IAI47_12760	0.54	-0.1
2,688,436	-		IAI47_12760	0.54	-2.1
2,688,436	-		IAI47_12760	0.54	-0.1
2,688,437	+		IAI47_12760	0.54	+0.8
2,688,437	+		IAI47_12760	0.54	-0.7
2,688,437	+		IAI47_12760	0.54	+1.6
2,688,437	+		IAI47_12760	0.54	+0.3
2,688,438	-		IAI47_12760	0.54	-0.7
2,688,438	-		IAI47_12760	0.54	-1.2
2,688,471	+		IAI47_12760	0.57	+0.3
2,688,471	+		IAI47_12760	0.57	+1.7
2,688,471	+		IAI47_12760	0.57	+0.3
2,688,472	-		IAI47_12760	0.57	-0.2
2,688,527	+		IAI47_12760	0.62	-0.2
2,688,527	+		IAI47_12760	0.62	-0.7
2,688,527	+		IAI47_12760	0.62	+0.1
2,688,579	+		IAI47_12760	0.66	-0.1
2,688,579	+		IAI47_12760	0.66	+2.3
2,688,579	+		IAI47_12760	0.66	+0.9
2,688,579	+		IAI47_12760	0.66	+0.3
2,688,579	+		IAI47_12760	0.66	-0.7
2,688,579	+		IAI47_12760	0.66	-1.9
2,688,579	+		IAI47_12760	0.66	-1.0
2,688,597	+		IAI47_12760	0.68	-1.0
2,688,597	+		IAI47_12760	0.68	+0.3
2,688,597	+		IAI47_12760	0.68	-1.2
2,688,612	+		IAI47_12760	0.69	+0.3
2,688,612	+		IAI47_12760	0.69	-0.9
2,688,612	+		IAI47_12760	0.69	+0.1
2,688,613	-		IAI47_12760	0.69	-0.7
2,688,626	+		IAI47_12760	0.70	-0.7
2,688,633	-		IAI47_12760	0.71	+1.9
2,688,633	-		IAI47_12760	0.71	-0.1
2,688,720	+		IAI47_12760	0.79	-0.2
2,688,756	+		IAI47_12760	0.82	+1.3
2,688,756	+		IAI47_12760	0.82	-1.3
2,688,756	+		IAI47_12760	0.82	-2.2
2,688,756	+		IAI47_12760	0.82	+0.3
2,688,756	+		IAI47_12760	0.82	+0.2
2,688,757	-		IAI47_12760	0.82	+1.5
2,688,757	-		IAI47_12760	0.82	+0.2
2,688,757	-		IAI47_12760	0.82	+0.3
2,688,757	-		IAI47_12760	0.82	+0.3
2,688,757	-		IAI47_12760	0.82	-0.8
2,688,757	-		IAI47_12760	0.82	-0.4
2,688,767	+				+1.3
2,688,809	+		IAI47_12760	0.87	-0.7
2,688,809	+		IAI47_12760	0.87	-0.2
2,688,813	+		IAI47_12760	0.87	-0.1
2,688,813	+		IAI47_12760	0.87	+2.6
2,688,813	+		IAI47_12760	0.87	-0.7
2,688,813	+		IAI47_12760	0.87	-2.2
2,688,813	+		IAI47_12760	0.87	+1.3
2,688,814	-		IAI47_12760	0.87	+1.9
2,688,834	+		IAI47_12760	0.89	-1.8
2,688,834	+		IAI47_12760	0.89	+0.3
2,688,835	-		IAI47_12760	0.89	+1.1
2,688,835	-		IAI47_12760	0.89	+1.3
2,688,837	+		IAI47_12760	0.89	+2.3
2,688,838	-		IAI47_12760	0.89	+0.3
2,688,857	+				-0.2
2,688,857	+				-1.0
2,688,857	+				+0.8
2,688,857	+				+0.9
2,688,862	-				+1.9
2,688,871	-				+1.3
2,688,897	-				-1.0
2,688,897	-				+0.7
2,688,928	+				+0.9
2,688,929	-				-1.1
2,688,934	+				+0.3
2,688,934	+				-0.4
2,688,945	+				-1.1
2,688,946	-				+1.3
2,688,954	+				-0.4
2,688,954	+				+0.3
2,688,955	-				-0.7
2,688,987	+				+2.2
2,688,988	-				+2.2
2,689,004	+				+1.7
2,689,044	+				+0.9
2,689,045	-				-0.2
2,689,045	-				-0.4
2,689,091	-				+0.3
2,689,143	-				-2.0
2,689,175	+				+1.2
2,689,176	-				-0.2
2,689,226	-				-2.4
2,689,226	-				-1.2
2,689,226	-				-0.4
2,689,296	-				-0.2
2,689,296	-				-0.5
2,689,296	-				-1.2
2,689,337	-		IAI47_12765	0.12	+0.3
2,689,352	+		IAI47_12765	0.14	-1.1
2,689,352	+		IAI47_12765	0.14	-2.1
2,689,352	+		IAI47_12765	0.14	-1.7
2,689,353	-		IAI47_12765	0.14	-0.4
2,689,478	-		IAI47_12765	0.24	-1.2
2,689,509	+		IAI47_12765	0.27	+0.8
2,689,509	+		IAI47_12765	0.27	-1.2
2,689,510	-		IAI47_12765	0.27	+0.3
2,689,582	+		IAI47_12765	0.33	-1.7
2,689,583	-		IAI47_12765	0.33	+0.3
2,689,600	+		IAI47_12765	0.34	-1.5
2,689,628	+		IAI47_12765	0.37	-2.8
2,689,628	+		IAI47_12765	0.37	+1.2
2,689,629	-		IAI47_12765	0.37	+0.3
2,689,634	+		IAI47_12765	0.37	-0.4
2,689,634	+		IAI47_12765	0.37	-1.2
2,689,634	+		IAI47_12765	0.37	-2.1
2,689,634	+		IAI47_12765	0.37	-1.0
2,689,635	-		IAI47_12765	0.37	+0.5
2,689,635	-		IAI47_12765	0.37	-1.2
2,689,637	+		IAI47_12765	0.38	-0.9
2,689,637	+		IAI47_12765	0.38	-0.7
2,689,637	+		IAI47_12765	0.38	+0.7
2,689,637	+		IAI47_12765	0.38	-2.6
2,689,637	+		IAI47_12765	0.38	-0.5
2,689,637	+		IAI47_12765	0.38	+0.1
2,689,638	-		IAI47_12765	0.38	-0.5
2,689,638	-		IAI47_12765	0.38	+0.9
2,689,638	-		IAI47_12765	0.38	+0.6
2,689,654	+		IAI47_12765	0.39	+0.3
2,689,654	+		IAI47_12765	0.39	+0.1
2,689,655	-		IAI47_12765	0.39	-1.5
2,689,829	+		IAI47_12765	0.54	-1.8
2,689,919	+		IAI47_12765	0.61	+0.0
2,689,919	+		IAI47_12765	0.61	+0.9
2,689,919	+		IAI47_12765	0.61	+0.3
2,689,920	-		IAI47_12765	0.61	-0.2
2,689,920	-		IAI47_12765	0.61	-2.0
2,689,940	+		IAI47_12765	0.63	-0.1
2,689,940	+		IAI47_12765	0.63	+0.3
2,689,940	+		IAI47_12765	0.63	-0.7
2,689,940	+		IAI47_12765	0.63	-1.2
2,689,941	-		IAI47_12765	0.63	+0.3
2,689,941	-		IAI47_12765	0.63	+0.3
2,689,941	-		IAI47_12765	0.63	+0.3
2,689,941	-		IAI47_12765	0.63	-0.2
2,689,942	+		IAI47_12765	0.63	-1.9
2,689,943	-		IAI47_12765	0.63	-1.1
2,689,943	-		IAI47_12765	0.63	+0.3
2,689,996	+		IAI47_12765	0.68	-0.8
2,689,996	+		IAI47_12765	0.68	-0.9
2,689,996	+		IAI47_12765	0.68	-3.0
2,690,018	+		IAI47_12765	0.70	-0.8
2,690,018	+		IAI47_12765	0.70	-3.4
2,690,019	-		IAI47_12765	0.70	+0.8
2,690,019	-		IAI47_12765	0.70	-1.2
2,690,019	-		IAI47_12765	0.70	-0.7
2,690,019	-		IAI47_12765	0.70	-0.4
2,690,032	+		IAI47_12765	0.71	-0.5
2,690,036	+		IAI47_12765	0.71	+0.3
2,690,036	+		IAI47_12765	0.71	+0.1
2,690,036	+		IAI47_12765	0.71	-1.7
2,690,037	-		IAI47_12765	0.71	-0.4
2,690,077	+		IAI47_12765	0.74	+0.3
2,690,078	-		IAI47_12765	0.75	-1.6
2,690,092	+		IAI47_12765	0.76	-1.1
2,690,092	+		IAI47_12765	0.76	-2.2
2,690,092	+		IAI47_12765	0.76	-0.3
2,690,093	-		IAI47_12765	0.76	-1.8
2,690,128	+		IAI47_12765	0.79	+4.8
2,690,129	-		IAI47_12765	0.79	-1.0
2,690,129	-		IAI47_12765	0.79	-0.2
2,690,209	+		IAI47_12765	0.86	-0.9
2,690,210	-		IAI47_12765	0.86	-1.2
2,690,210	-		IAI47_12765	0.86	-0.3
2,690,212	+		IAI47_12765	0.86	-1.2
2,690,212	+		IAI47_12765	0.86	-0.2
2,690,212	+		IAI47_12765	0.86	-1.4
2,690,212	+		IAI47_12765	0.86	-2.5
2,690,213	-		IAI47_12765	0.86	-0.1
2,690,215	+		IAI47_12765	0.86	-2.4
2,690,215	+		IAI47_12765	0.86	-2.0
2,690,227	+		IAI47_12765	0.87	-2.8
2,690,227	+		IAI47_12765	0.87	-0.9
2,690,262	+				-0.8
2,690,262	+				-0.7
2,690,262	+				-0.2
2,690,263	-				+0.8
2,690,263	-				-0.1
2,690,291	+				-1.2
2,690,292	-				-1.7
2,690,292	-				-2.2
2,690,292	-				-0.7
2,690,300	-				+1.9
2,690,300	-				-0.7
2,690,300	-				+0.0
2,690,341	+				+0.1
2,690,341	+				-1.9
2,690,341	+				-0.7
2,690,341	+				+0.9
2,690,341	+				-1.5
2,690,342	-				-0.1
2,690,342	-				-1.5
2,690,342	-				-2.2
2,690,342	-				-1.2
2,690,342	-				-1.2
2,690,342	-				+0.3
2,690,342	-				+0.0
2,690,342	-				-0.2
2,690,342	-				-0.2
2,690,342	-				-1.4
2,690,378	+				+0.7
2,690,378	+				+0.3
2,690,379	-				-1.8
2,690,379	-				-0.0
2,690,379	-				+2.3
2,690,422	+				+3.1
2,690,422	+				-0.2
2,690,463	+				+0.3
2,690,464	-				-0.1
2,690,487	+				+1.3
2,690,487	+				-0.3
2,690,487	+				-1.0
2,690,539	+		IAI47_12770	0.15	+0.1
2,690,554	-		IAI47_12770	0.17	+2.7
2,690,554	-		IAI47_12770	0.17	+1.1
2,690,562	+		IAI47_12770	0.18	+0.9
2,690,562	+		IAI47_12770	0.18	+0.7
2,690,562	+		IAI47_12770	0.18	+0.3
2,690,562	+		IAI47_12770	0.18	-1.7
2,690,562	+		IAI47_12770	0.18	-1.2
2,690,562	+		IAI47_12770	0.18	-0.1
2,690,562	+		IAI47_12770	0.18	+0.1
2,690,562	+		IAI47_12770	0.18	-0.2
2,690,562	+		IAI47_12770	0.18	-0.0
2,690,563	-		IAI47_12770	0.19	+0.3
2,690,563	-		IAI47_12770	0.19	-0.0
2,690,563	-		IAI47_12770	0.19	-1.2
2,690,563	-		IAI47_12770	0.19	-0.4
2,690,563	-		IAI47_12770	0.19	-0.4
2,690,614	-		IAI47_12770	0.27	-0.7
2,690,620	-		IAI47_12770	0.28	-1.0
2,690,719	+		IAI47_12770	0.43	+0.8
2,690,719	+		IAI47_12770	0.43	-2.5
2,690,719	+		IAI47_12770	0.43	-1.2
2,690,720	-		IAI47_12770	0.43	+0.9
2,690,720	-		IAI47_12770	0.43	-0.5
2,690,934	+		IAI47_12770	0.77	+0.2
2,690,935	-		IAI47_12770	0.78	-0.2
2,690,935	-		IAI47_12770	0.78	+0.8
2,691,060	+				+0.7
2,691,060	+				+1.0
2,691,060	+				+0.3
2,691,061	-				+0.6
2,691,061	-				+1.8
2,691,061	-				+1.2
2,691,061	-				+0.6
2,691,116	+				+0.8
2,691,117	-				-0.8
2,691,144	+				+0.3
2,691,144	+				-0.4
2,691,144	+				+1.7
2,691,144	+				+0.2
2,691,144	+				+0.8
2,691,144	+				+0.5
2,691,144	+				-1.8
2,691,144	+				-0.4
2,691,144	+				+0.3
2,691,144	+				-1.2
2,691,144	+				-0.7
2,691,145	-				-0.7
2,691,145	-				+2.3
2,691,145	-				+0.0
2,691,145	-				-0.3
2,691,145	-				+0.3
2,691,145	-				+0.2
2,691,148	+				+1.3
2,691,148	+				+1.2
2,691,148	+				+0.1
2,691,148	+				-0.2
2,691,149	-				-0.0
2,691,149	-				+0.5
2,691,149	-				-0.7
2,691,149	-				+0.3
2,691,149	-				-0.4
2,691,149	-				-0.1
2,691,157	-				-0.4
2,691,168	-				-0.7
2,691,170	+		IAI47_12775	0.10	-1.2
2,691,171	-		IAI47_12775	0.10	-1.5
2,691,171	-		IAI47_12775	0.10	-0.9
2,691,171	-		IAI47_12775	0.10	-0.7
2,691,175	+		IAI47_12775	0.11	-0.2
2,691,175	+		IAI47_12775	0.11	-1.2
2,691,176	-		IAI47_12775	0.11	+0.3
2,691,176	-		IAI47_12775	0.11	+1.1
2,691,176	-		IAI47_12775	0.11	-0.1
2,691,197	-		IAI47_12775	0.15	+0.3
2,691,212	-		IAI47_12775	0.18	-0.7
2,691,238	-		IAI47_12775	0.22	-1.5
2,691,269	+		IAI47_12775	0.28	-0.3
2,691,269	+		IAI47_12775	0.28	+0.1
2,691,269	+		IAI47_12775	0.28	+0.2
2,691,269	+		IAI47_12775	0.28	+0.2
2,691,269	+		IAI47_12775	0.28	-0.8
2,691,269	+		IAI47_12775	0.28	-0.2
2,691,270	-		IAI47_12775	0.28	+0.5
2,691,270	-		IAI47_12775	0.28	-1.0
2,691,270	-		IAI47_12775	0.28	-0.8
2,691,270	-		IAI47_12775	0.28	+3.3
2,691,270	-		IAI47_12775	0.28	+0.5
2,691,270	-		IAI47_12775	0.28	+1.3
2,691,304	+		IAI47_12775	0.34	-0.4
2,691,304	+		IAI47_12775	0.34	-0.1
2,691,305	-		IAI47_12775	0.35	+0.3
2,691,305	-		IAI47_12775	0.35	-1.2
2,691,305	-		IAI47_12775	0.35	-1.2
2,691,305	-		IAI47_12775	0.35	-0.1
2,691,305	-		IAI47_12775	0.35	-0.4
2,691,305	-		IAI47_12775	0.35	+1.3
2,691,305	-		IAI47_12775	0.35	-1.3
2,691,333	-		IAI47_12775	0.40	-0.7
2,691,358	-		IAI47_12775	0.44	+0.3
2,691,363	+		IAI47_12775	0.45	-0.1
2,691,364	-		IAI47_12775	0.45	-0.2
2,691,364	-		IAI47_12775	0.45	-1.0