Strain Fitness in Pantoea sp. MT58 around IAI47_10840

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
2,286,115	+		IAI47_10820	0.83	-0.2
2,286,116	-		IAI47_10820	0.83	-0.3
2,286,117	+		IAI47_10820	0.83	-0.8
2,286,117	+		IAI47_10820	0.83	+0.6
2,286,117	+		IAI47_10820	0.83	+0.1
2,286,118	-		IAI47_10820	0.83	+0.3
2,286,123	+		IAI47_10820	0.84	+0.4
2,286,123	+		IAI47_10820	0.84	+0.9
2,286,123	+		IAI47_10820	0.84	+0.5
2,286,124	-		IAI47_10820	0.84	+0.3
2,286,124	-		IAI47_10820	0.84	+0.6
2,286,144	+		IAI47_10820	0.85	+0.7
2,286,144	+		IAI47_10820	0.85	+1.3
2,286,145	-		IAI47_10820	0.85	+0.0
2,286,145	-		IAI47_10820	0.85	+0.7
2,286,157	+		IAI47_10820	0.86	+0.5
2,286,157	+		IAI47_10820	0.86	+1.1
2,286,158	-		IAI47_10820	0.86	+0.4
2,286,185	-		IAI47_10820	0.88	+0.3
2,286,249	+				+0.9
2,286,252	+				+0.1
2,286,252	+				+0.4
2,286,292	-				+0.8
2,286,302	+				+0.8
2,286,303	-				+0.1
2,286,346	+				-1.1
2,286,347	-				+0.7
2,286,347	-				-0.3
2,286,347	-				-1.0
2,286,433	-				-0.1
2,286,433	-				-0.1
2,286,508	+				-2.1
2,286,508	+				-1.1
2,286,508	+				+0.1
2,286,508	+				-1.1
2,286,508	+				+0.6
2,286,521	+		IAI47_10825	0.26	+0.3
2,286,521	+		IAI47_10825	0.26	+1.4
2,286,566	+		IAI47_10825	0.84	+0.5
2,286,659	+				-0.7
2,286,659	+				-0.3
2,286,659	+				-0.2
2,286,659	+				+0.3
2,286,659	+				-0.3
2,286,659	+				+0.0
2,286,663	+				-0.5
2,286,663	+				-0.4
2,286,663	+				+0.2
2,286,664	-				+0.7
2,286,666	+				+0.2
2,286,666	+				+0.1
2,286,666	+				+2.1
2,286,667	-				+0.4
2,286,677	-		IAI47_10835	0.10	+0.7
2,286,832	-				+0.3
2,286,835	+				+0.9
2,286,835	+				-0.2
2,286,836	-				-0.4
2,286,844	+				+0.1
2,286,844	+				-0.1
2,286,844	+				+0.7
2,286,844	+				-0.2
2,286,844	+				-0.3
2,286,844	+				+1.9
2,286,861	+				+1.0
2,286,861	+				-1.5
2,286,861	+				-0.3
2,286,862	-				-0.3
2,286,890	+				+0.7
2,286,890	+				-0.4
2,286,890	+				-0.3
2,286,890	+				+0.0
2,286,891	-				-0.7
2,286,891	-				-1.3
2,286,891	-				-0.3
2,286,909	-				-0.5
2,286,982	+				+0.3
2,286,982	+				-0.0
2,286,982	+				-1.7
2,286,982	+				-1.7
2,286,982	+				-0.6
2,286,983	-				+0.3
2,286,989	-				-1.3
2,286,996	-				+0.3
2,287,189	+				-0.7
2,287,189	+				-0.7
2,287,237	+		IAI47_10840	0.10	-3.2
2,287,237	+		IAI47_10840	0.10	+0.5
2,287,237	+		IAI47_10840	0.10	+0.3
2,287,238	-		IAI47_10840	0.10	-1.7
2,287,288	+		IAI47_10840	0.14	+0.3
2,287,364	-		IAI47_10840	0.19	-0.7
2,287,364	-		IAI47_10840	0.19	+0.3
2,287,370	-		IAI47_10840	0.20	+1.6
2,287,370	-		IAI47_10840	0.20	-0.7
2,287,414	+		IAI47_10840	0.23	-0.3
2,287,414	+		IAI47_10840	0.23	-0.7
2,287,418	+		IAI47_10840	0.23	-1.3
2,287,419	-		IAI47_10840	0.23	+0.3
2,287,510	+		IAI47_10840	0.30	-0.7
2,287,523	-		IAI47_10840	0.31	-1.7
2,287,675	+		IAI47_10840	0.41	+0.3
2,287,775	-		IAI47_10840	0.48	-0.3
2,288,072	-		IAI47_10840	0.69	-0.3
2,288,150	-		IAI47_10840	0.75	+0.3
2,288,234	-		IAI47_10840	0.81	-1.1
2,288,250	+		IAI47_10840	0.82	-1.7
2,288,250	+		IAI47_10840	0.82	-1.3
2,288,255	-		IAI47_10840	0.82	+0.9
2,288,255	-		IAI47_10840	0.82	-1.1
2,288,276	-		IAI47_10840	0.84	+0.9
2,288,326	+		IAI47_10840	0.87	-1.3
2,288,457	+				+0.3
2,288,457	+				-1.7
2,288,458	-				-0.3
2,288,460	+				-0.4
2,288,473	+				+1.0
2,288,473	+				-1.1
2,288,501	+				+0.9
2,288,502	-				+0.3
2,288,512	+				-0.1
2,288,521	-				-0.5
2,288,521	-				+0.6
2,288,552	+				+0.6
2,288,552	+				-0.6
2,288,559	-				+0.7
2,288,598	+				-0.8
2,288,615	+				-0.7
2,288,633	+				-0.6
2,288,667	+				-0.2
2,288,667	+				+0.3
2,288,668	-				+1.7
2,288,668	-				+0.9
2,288,708	+				+0.7
2,288,757	-				-1.1
2,288,759	+				+0.0
2,288,759	+				-2.3
2,288,759	+				-1.1
2,288,760	-				-2.1
2,288,799	+				-2.5
2,288,801	+				-1.1
2,288,818	+				-0.3
2,288,818	+				+1.9
2,288,838	+		IAI47_10845	0.13	-0.7
2,288,838	+		IAI47_10845	0.13	-1.5
2,288,854	+		IAI47_10845	0.20	-2.1
2,288,854	+		IAI47_10845	0.20	+0.1
2,288,854	+		IAI47_10845	0.20	-0.1
2,288,854	+		IAI47_10845	0.20	-1.3
2,288,854	+		IAI47_10845	0.20	+0.9
2,288,980	+		IAI47_10845	0.73	-0.3
2,288,980	+		IAI47_10845	0.73	-0.3
2,289,037	+				-0.3
2,289,037	+				+0.3
2,289,041	+				-0.1
2,289,041	+				-1.1
2,289,070	+				+0.9
2,289,112	+				-1.3
2,289,113	-				-0.1
2,289,113	-				+0.7
2,289,113	-				+1.3
2,289,140	+				-0.7
2,289,267	+		IAI47_10850	0.14	+0.3
2,289,268	-		IAI47_10850	0.14	-0.0
2,289,278	+		IAI47_10850	0.15	+1.1
2,289,290	+		IAI47_10850	0.16	+1.7
2,289,311	+		IAI47_10850	0.18	-0.9
2,289,311	+		IAI47_10850	0.18	+0.5
2,289,312	-		IAI47_10850	0.18	-1.5
2,289,371	+		IAI47_10850	0.24	+0.3
2,289,371	+		IAI47_10850	0.24	-1.7
2,289,390	+		IAI47_10850	0.26	+0.4
2,289,390	+		IAI47_10850	0.26	+1.0
2,289,390	+		IAI47_10850	0.26	+0.8
2,289,390	+		IAI47_10850	0.26	-0.7
2,289,400	+		IAI47_10850	0.27	+1.3
2,289,400	+		IAI47_10850	0.27	-1.3
2,289,401	-		IAI47_10850	0.27	-0.3
2,289,427	+		IAI47_10850	0.30	-0.2
2,289,428	-		IAI47_10850	0.30	-1.3
2,289,480	-		IAI47_10850	0.35	+2.6
2,289,494	+		IAI47_10850	0.36	-0.7